Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001857

Physical Location & Seq

Genomic Coordinates Forward (+)

39685741 .. 39690466

Gene Structure 4726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0324100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTGATGGGTCGTCCCATCCATCTATATTTCAGAAAATACATGGGCAGTCCTGCCTCATTTCTAAGCTTTCTCCCAACTTGAAGAGCAGAAACTATGGTTTAACTGGTGCTTATGCAAATGGAGGCTTGCAAGGCCCCCTGCTGCCAGCATGCCAAAGCACTGCCCTTGCACAGCTCTCACCGGTGTCTCCCATTTTGGCACAGGCTCCGGCAGAGAAAGGGGCAGCTGGTTTTGCTATTGATTTCCTTATGGGAGGTGCATCTGCTGCTGTTTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTTAAACTACTAATCCAAAATCAGGATGAGATGATCAAGGCCGGTCGGCTTTCTCAACCATACAAGGGAATAACTGACTGCTTTGCCCGAACAATTAAGGATGAGGGTCTCATTTCTCTGTGGAGAGGAAATACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTCTGTTTGTTTATTCCTTGGACTTTGCTAGAACACGTTTGGCAAATGATGGTAAGGCTGCCAAAAAGGGTGGGGAGAGACAGTTTAATGGTTTGATTGATGTTTACAAGAAAACCCTAAAGTCTGATGGTATTGCTGGGCTGTATCGCGGATTTAATATCTCATGTGTTGGAATTATTGTGTATCGTGGGCTCTATTTTGGAATGTATGATTCTCTGAAACCTGTGGTTCTGGTGGGTAAGCTGGAGGATAATTTCTTTGCTAGTTTTTTGCTGGGATGGGGAATTACAATTGGAGCTGGATTGGCTTCATACCCAATTGACACAGTGCGCAGAAGAATGATGATGACCTCAGGAGAAGCAGTAAAATATAAAAGCTCTTTGGATGCCTTTAAGCAAATCATAAAAAATGAGGGTGCTAAATCTCTATTCAAAGGTGCTGGAGCAAACATATTACGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCATTGTTTTTGGCAAGAAGTATGGATCTGGTGGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

380

Amino Acids

40.67

Weight (kDa)

9.81

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 174	1.5e-25	Mitochondrial carrier protein
Mito_carr	PF00153	182 - 274	4e-21	Mitochondrial carrier protein
Mito_carr	PF00153	282 - 370	2.2e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15880 AT3G15880 AT3G15880 AT3G15880
fragaria_vesca	FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730
malus_domestica	MD02G1027700.v1.1 MD11G1043800.v1.1 MD15G1169300.v1.1
prunus_persica	Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1
pyrus_communis	pycom12419g00020
rosa_chinensis	RchiOBHm_Chr2g0087841
rosa_laevigata	RLG00000015906 RLG00000019456
rosa_multiflora	Rmu_sc0008385.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153180
rosa_rugosa	Rorug01G0479000 Rorug01G0479000 Rorug02G0324100 Rorug02G0324100
rosa_samantha	Rh2BG032700
rosa_wichuraiana	Rw2G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1052
Acc16I	TGCGCA	1 cut(s)	926
Acc36I	ACCTGC	1 cut(s)	1052
AccII	CGCG	1 cut(s)	744
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	1 cut(s)	1132
AfiI	CCNNNNNNNGG	2 cut(s)	328, 371
AflIII	ACRYGT	1 cut(s)	629
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	7 cut(s)	85, 478, 490, 502, 514, 520, 1027
AjnI	CCWGG	2 cut(s)	468, 561
AluBI	AGCT	8 cut(s)	70, 178, 230, 287, 838, 893, 972, 1093
AluI	AGCT	8 cut(s)	70, 178, 230, 287, 838, 893, 972, 1093
Alw26I	GTCTC	3 cut(s)	195, 419, 667
AlwI	GGATC	1 cut(s)	1132
AlwNI	CAGNNNCTG	2 cut(s)	290, 1067
AoxI	GGCC	3 cut(s)	136, 345, 471
ApeKI	GCWGC	8 cut(s)	145, 227, 269, 287, 290, 578, 653, 1093
AsiGI	ACCGGT	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	946
BanII	GRGCYC	1 cut(s)	789
BbvI	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BccI	CCATC	7 cut(s)	2, 27, 31, 527, 638, 716, 867
BciT130I	CCWGG	2 cut(s)	470, 563
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	3 cut(s)	195, 419, 667
BfaI	CTAG	2 cut(s)	624, 858
BfuAI	ACCTGC	1 cut(s)	1052
BisI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
BlsI	GCNGC	8 cut(s)	147, 229, 271, 289, 292, 580, 655, 1095
Bme1390I	CCNGG	2 cut(s)	470, 563
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	3 cut(s)	139, 210, 560
BmrFI	CCNGG	2 cut(s)	470, 563
BmsI	GCATC	3 cut(s)	272, 575, 970
BpmI	CTGGAG	2 cut(s)	860, 1056
BsaAI	YACGTR	1 cut(s)	1052
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	468, 612
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	4 cut(s)	662, 692, 942, 972
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 371
Bse118I	RCCGGY	2 cut(s)	184, 347
Bse1I	ACTGG	2 cut(s)	112, 545
Bse21I	CCTNAGG	1 cut(s)	946
BseBI	CCWGG	2 cut(s)	470, 563
BseDI	CCNNGG	2 cut(s)	468, 612
BseGI	GGATG	5 cut(s)	19, 337, 412, 878, 985
BseLI	CCNNNNNNNGG	2 cut(s)	328, 371
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	2 cut(s)	112, 545
BseXI	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BseYI	CCCAGC	3 cut(s)	554, 731, 868
Bsh1236I	CGCG	1 cut(s)	744
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	3 cut(s)	138, 347, 473
BshTI	ACCGGT	1 cut(s)	184
BsiEI	CGRYCG	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	185, 212, 348
BslI	CCNNNNNNNGG	2 cut(s)	328, 371
BsmAI	GTCTC	3 cut(s)	195, 419, 667
BsnI	GGCC	3 cut(s)	138, 347, 473
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	339, 1124
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	3 cut(s)	138, 347, 473
BspCNI	CTCAG	1 cut(s)	959
BspFNI	CGCG	1 cut(s)	744
BspLI	GGNNCC	3 cut(s)	139, 210, 560
BspMI	ACCTGC	1 cut(s)	1052
BspPI	GGATC	1 cut(s)	1132
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	419
BsrFI	RCCGGY	2 cut(s)	184, 347
BsrI	ACTGG	2 cut(s)	112, 545
BssAI	RCCGGY	2 cut(s)	184, 347
BssECI	CCNNGG	2 cut(s)	468, 612
BssMI	GATC	2 cut(s)	339, 1124
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	470, 563
Bst4CI	ACNGT	2 cut(s)	678, 922
Bst6I	CTCTTC	2 cut(s)	80, 600
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	1052
BstC8I	GCNNGC	5 cut(s)	131, 150, 154, 1077, 1081
BstDEI	CTNAG	2 cut(s)	66, 946
BstF5I	GGATG	5 cut(s)	19, 337, 412, 878, 985
BstFNI	CGCG	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	2 cut(s)	342, 1127
BstMAI	GTCTC	3 cut(s)	195, 419, 667
BstMBI	GATC	2 cut(s)	339, 1124
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 236, 269, 584, 899
BstNI	CCWGG	2 cut(s)	470, 563
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	468, 561
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BstX2I	RGATCY	1 cut(s)	1124
BstYI	RGATCY	1 cut(s)	1124
Bsu36I	CCTNAGG	1 cut(s)	946
BsuRI	GGCC	3 cut(s)	138, 347, 473
BtsCI	GGATG	5 cut(s)	19, 337, 412, 878, 985
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 927
BveI	ACCTGC	1 cut(s)	1052
Cac8I	GCNNGC	5 cut(s)	131, 150, 154, 1077, 1081
CaiI	CAGNNNCTG	2 cut(s)	290, 1067
CfoI	GCGC	1 cut(s)	927
Cfr10I	RCCGGY	2 cut(s)	184, 347
Cfr13I	GGNCC	1 cut(s)	137
CspAI	ACCGGT	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	3 cut(s)	44, 153, 759
DdeI	CTNAG	2 cut(s)	66, 946
DpnI	GATC	2 cut(s)	341, 1126
DpnII	GATC	2 cut(s)	339, 1124
Eam1104I	CTCTTC	2 cut(s)	80, 600
EarI	CTCTTC	2 cut(s)	80, 600
Eco130I	CCWWGG	1 cut(s)	612
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	468, 561
EcoT14I	CCWWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	3 cut(s)	47, 156, 762
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FatI	CATG	3 cut(s)	43, 152, 758
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
FokI	GGATG	5 cut(s)	6, 344, 419, 885, 992
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
FspBI	CTAG	2 cut(s)	624, 858
FspI	TGCGCA	1 cut(s)	926
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
GsaI	CCCAGC	3 cut(s)	558, 735, 872
GsuI	CTGGAG	2 cut(s)	860, 1056
HaeIII	GGCC	3 cut(s)	138, 347, 473
HapII	CCGG	3 cut(s)	185, 212, 348
HhaI	GCGC	1 cut(s)	927
Hin1II	CATG	3 cut(s)	47, 156, 762
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	806
HpaII	CCGG	3 cut(s)	185, 212, 348
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	4 cut(s)	36, 455, 721, 813
Hpy188III	TCNNGA	4 cut(s)	329, 502, 520, 948
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	2 cut(s)	678, 922
HpyCH4IV	ACGT	2 cut(s)	631, 1051
HpyCH4V	TGCA	6 cut(s)	119, 133, 173, 263, 1061, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 236, 269, 584, 899
HpyF3I	CTNAG	2 cut(s)	66, 946
HpySE526I	ACGT	2 cut(s)	631, 1051
Hsp92II	CATG	3 cut(s)	47, 156, 762
HspAI	GCGC	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	339, 1124
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	4 cut(s)	214, 298, 890, 1037
Lsp1109I	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
LweI	GCATC	3 cut(s)	272, 575, 970
MaeI	CTAG	2 cut(s)	624, 858
MaeII	ACGT	2 cut(s)	631, 1051
MalI	GATC	2 cut(s)	341, 1126
MboI	GATC	2 cut(s)	339, 1124
MboII	GAAGA	3 cut(s)	97, 587, 942
MfeI	CAATTG	3 cut(s)	297, 885, 912
MflI	RGATCY	1 cut(s)	1124
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	7 cut(s)	297, 399, 768, 847, 879, 885, 912
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	9 cut(s)	68, 119, 251, 403, 425, 498, 835, 955, 1000
MseI	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
MspA1I	CMGCKG	2 cut(s)	230, 287
MspI	CCGG	3 cut(s)	185, 212, 348
MspR9I	CCNGG	2 cut(s)	470, 563
MunI	CAATTG	3 cut(s)	297, 885, 912
MvaI	CCWGG	2 cut(s)	470, 563
MvnI	CGCG	1 cut(s)	744
MwoI	GCNNNNNNNGC	5 cut(s)	135, 236, 269, 584, 899
NdeII	GATC	2 cut(s)	339, 1124
NlaIII	CATG	3 cut(s)	47, 156, 762
NlaIV	GGNNCC	3 cut(s)	139, 210, 560
NsbI	TGCGCA	1 cut(s)	926
NspI	RCATGY	1 cut(s)	156
PaeI	GCATGC	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	1052
PceI	AGGCCT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	806
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	8 cut(s)	147, 229, 271, 289, 292, 580, 655, 1095
Ppu21I	YACGTR	1 cut(s)	1052
Psp6I	CCWGG	2 cut(s)	468, 561
PspFI	CCCAGC	3 cut(s)	554, 731, 868
PspGI	CCWGG	2 cut(s)	468, 561
PspN4I	GGNNCC	3 cut(s)	139, 210, 560
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	2 cut(s)	290, 1067
PsuI	RGATCY	1 cut(s)	1124
PvuII	CAGCTG	2 cut(s)	230, 287
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
SatI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
Sau3AI	GATC	2 cut(s)	339, 1124
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	470, 563
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	3 cut(s)	272, 575, 970
SgrAI	CRCCGGYG	1 cut(s)	184
SphI	GCATGC	1 cut(s)	156
Sse9I	AATT	7 cut(s)	297, 399, 768, 847, 879, 885, 912
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	2 cut(s)	624, 858
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	468, 561
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	678, 922
TaiI	ACGT	2 cut(s)	634, 1054
TasI	AATT	7 cut(s)	297, 399, 768, 847, 879, 885, 912
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
Tru9I	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
TscAI	CASTG	2 cut(s)	169, 927
TseI	GCWGC	8 cut(s)	145, 227, 269, 287, 290, 578, 653, 1093
TspDTI	ATGAA	2 cut(s)	579, 894
TspRI	CASTG	2 cut(s)	169, 927
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	2 cut(s)	624, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.