Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001857

Physical Location & Seq

Genomic Coordinates Reverse (-)

5364081 .. 5372293

Gene Structure 8213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3408 bp

ATGTCGTCACTCAGCAGAGAACTCGTGTTTTTAATACTTCAGTTTCTCGATGAAGAGAAATTCAAAGATACTGTTCACAGGTTGGAGAAAGAGTCTGGTTTTTTCTTCAACATGAGGTACTTTGAAGATAGTGTAACAGCTGGTGAATGGGATGATGTAGAGAAGTATCTTTCTGGATTCACTAAAGTTGATGATAATAGATACTCTATGAAAATATTTTTCGAGATTCGGAAGCAGAAGTACCTTGAAGCACTTGACAAGAAAGATCATGCCAAGGCGGTTGATATTCTTGTTAAGGAGTTGAAAGTGTTCTCGACATTCAACGAAGAGCTTTTTAAGGAGATTACCATGCTTTTAACCTTGACTAACTTCAGGGAAAATGAGCAGCTTTCCAAGTATGGAGATACTAAGTCCGCAAGAGGTATCATGCTTGGGGAACTTAAAAAACTGATTGAAGCAAATCCTCTCTTCCGAGACAAACTTCAATTTCCCAGTTTGAAGAATTCTAGATTGAGAACCTTAATAAATCAAAGTTTGAACTGGCAACATCAGCTTTGCAAGAATCCTAGGCCTAACCCGGATATAAAAACACTATTTGTTGACCATACGTGTGGGCATCCCAATGGTGCACACACTCCTTCCCCTACAACTAATCATTTAATGGGTTCAGTCCCTAAAGTTGGAGGCTTCCCACCATTAGGTGCTCACGGTCCATTTCAGCCAACACCAGCTCCTCTTACAACATCTCTTGCAGGATGGATGCCTAATCCATCGGTACAACACCCTACTGTTTCCGCTGGGCCTATCGGCTTAGGTGCCCCCAACAGTGCTGTGTCTATGTTAAAGCGTGAGCGTCCCAGGAGTCCTCCAACTAATAGCCTATCAATGGATTATCAGACGGCAGATTCTGAAAGTGTGTTGAAGAGACCCAGACCTTTTGGTATTTCAGATGGGGTTAATAATCTTCCAGTCAATGTCTTGCCAGTCACATATCCAGGGCAAAGCCATGCTCATGCAACTTATTCTACTGATGACTTGCCCAAAAACGTTAGCAGGATTTTGAGTCAGGGTTCTGCCATTAAGAGCATGGATTTTCATCCAGTACAGCAAACTATGCTCCTTGTTGGCACCAATCTTGGTGATATTGCAATATGGGAGGTGGGTAGCAGGGAGAAGCTCGTTTCTAGAAGCTTTAAAGTTTGGGATCTTGCTACTTGCACTGTGAACCTTCAGGCTTCACTTGCTAGCGAGTATACTGCAGCAGTAAACCGAGTTGTTTGGAGTCCTGATGGAGGTCTACTGGGTGTCGCATATTCCAAGCATATTGTGCATATATATTCATATCATGGTGGCGAGGATTTACGGAATCATCTAGAGATTGATGCCCATGCTGGTAATGTCAACGATCTTGCTTTCTCCCAACCAAACCAGCAATTATGTGTTGTGACTTGTGGAGAAGACAAGACAATCAAGGTCTGGGATGCTGTTACCGGAAATAAATTGCACACTTTTGAAGGTCATGAGGCACCTGTTTATTCCGTGTGCCCACACCAGAAAGAGAATATTCAGTTCATATTCTCAACTGCTGTTGATGGGAAAATAAAGGCTTGGTTATATGACAACATGGGTTCTAGAGTGGATTATGATGCCCCCGGTCGATCTTGCACGTCGATGGCATATTGTGCTGATGGGACTAGATTATTTTCTTGTGGTACTAGTAAGGAGGGGGAGTCATTCATTGTTGAATGGAATGAAAGTGAAGGAGCTGTGAAGCGGACTTATCTTGGACTGGGGAAACGGTCTGTGGGGGTTGTCCAGTTCGACACCATGAAGAATAAATTTTTGGTAGCTGGTGATGAATTCCAAGTCAAATTTTGGGATATGGATAGTGTTGATCTCTTGAGTTCAACGGCTGCAGAAGGGGGTTTACCGTCTTCCCCTTGCTTAAGGATCAATAAAGAAGGAACTCTGCTGGCCGTCTCAACTACTGATAACGGAATTAAGATTCTAGCGAATGCTGAAGGTTCCAGAATTTTGCATTCCATGGCAAACCGTGGCCTTGATAGCTCTAGAGCTCCTCCTGGGTCAGTTGCTAAGGGTCCTATTGTTGGCACATTTGGCACTCCAAATTCAAGCACTGGAATGAGTCTATCAATGGGTGAAAGAAGTGGACCAGTGGCATCTGTTACTGGATTGAATGGAGATAATCGCAGTCTGCCAGATGTCAAACCACGAATCGCTGATGATGCAGAGAAATCAAAGACTTGGAAGCTGACTGAGATCAGTGAACGTTCCCAGCTTCGTACTCTGCGGCTTCCTGACACCCTGCTACCAGCAAGAGTTGTTAAGTTGATATATACAAATTCTGGAGGTGCTATATTGGCATTAGCAGAAAATGCTGCACATAAACTATGGAAATGGCAAAAGAGTGAGCGGAATCTTTTGGGAAAGGCAAACAGCAATGTCCCACCACAGCTTTGGCAGCCATCTAGTGGAGTATTAATGACAAATGATACACGTGAGGGAAACAAAGAGGATGTAGTTCCATGCTTTGCACTCTCAAAAAATGATTCTTATGTCATGTCAGCCTCTGGAGGAAAAATTTCCTTATTCAACATGATGACTTTTAAGACGATGACGACATTCATGGCTCCTCCTCCAGCAGCGACTTCCCTTGCCTTCCATCCTCAAGACAATAATATAATTGCTATCGGAATGGATGACTCTTCTATTCAAATCTACAATGTCAGAGTTGATGAGGTTAAAAGTAAATTGAAAGGTCATCAGAAGAGAGTGACTGGTTTAGCATTCTCAAACGTGCTAAATGTTCTTGTTTCCTCTGGTGCTGATTCTCAGCTTTGTGTATGGAGCATGGATGGATGGGAAAAACAAGCTAGCAAACAGATACAAATTCCAAGCGGGCATTCACCAAATCCACTTGCTCATACACGCGTTCAGTTCCATCAAGACCAGATACATGTACTTGTTGTCCATGCCAGCCAGTTAGCCATATATGAGGCTCCTAAATTAGAGAACATGAAGCAGTGGATACCGAAAGAGTCAAGTGGTTCAGTCACAGATGCAGTATATTCATGTGATAGCCAGTCAATCTATGCAGCCTTTGATGATGGAAGTGTGAGTATCTTGACGGCAACAACATTGCAACTGAAGTGCCGCATTGGTCCCAATTCATATTTGCCTTCAAACCCGAGCTCGAGAGTATATCCAGCCACAGTTGCAGCACATCCGTCTGAACCAAACCAGTTTGCAGTTGGACTAACCGATGGTGGGGTCCACGTGATCGAACCACCAGGTCCAGAAGGGAAGTGGGGAATATCCGCACCACCAGAAAACGGAGCAGGGCCAAGCGTCTCCTCAGCTCCCGGGTCAGATCAACAACCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1135

Amino Acids

124.1

Weight (kDa)

7.03

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 34	4.4e-12	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	37 - 161	2.3e-62	TPR1-like, CTLH-containing domain
zf_topless	PF21359	164 - 204	2.8e-25	TOPLESS, zinc finger domain
Beta-prop_WDR3_2nd	PF25172	351 - 574	7.5e-13	WDR3 second beta-propeller domain
Beta-prop_RIG_2nd	PF23775	360 - 513	1.4e-07	RIG second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	397 - 515	4.5e-08	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	398 - 571	1.3e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	398 - 575	1.4e-19	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	400 - 669	8.8e-08	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	418 - 630	9.9e-22	WDR5 beta-propeller domain
WDR55	PF24796	420 - 537	8.8e-08	WDR55
Beta-prop_THOC3	PF25174	420 - 680	1.1e-24	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	436 - 540	1.3e-11	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	457 - 667	1.4e-09	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	460 - 494	2.7e-06	WD domain, G-beta repeat
WD40_Prp19	PF24814	476 - 565	1.7e-08	Prp19 WD40 domain
WD40_Prp19	PF24814	825 - 1040	4.9e-18	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	825 - 1064	2.2e-12	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	826 - 959	1.9e-16	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	842 - 962	2.6e-13	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	844 - 958	7.8e-10	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	848 - 966	3.4e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	850 - 970	3.2e-13	WDR3 second beta-propeller domain
WD40_WDHD1_1st	PF24817	853 - 1053	6.7e-15	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	857 - 959	5e-11	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	861 - 1050	1.4e-10	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	866 - 959	1.6e-08	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15880 AT3G15880 AT3G15880 AT3G15880
fragaria_vesca	FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730
malus_domestica	MD02G1027700.v1.1 MD11G1043800.v1.1 MD15G1169300.v1.1
prunus_persica	Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1
pyrus_communis	pycom12419g00020
rosa_chinensis	RchiOBHm_Chr2g0087841
rosa_laevigata	RLG00000015906 RLG00000019456
rosa_multiflora	Rmu_sc0008385.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153180
rosa_rugosa	Rorug01G0479000 Rorug01G0479000 Rorug02G0324100 Rorug02G0324100
rosa_samantha	Rh2BG032700
rosa_wichuraiana	Rw2G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	815, 1127, 1525
AccB7I	CCANNNNNTGG	1 cut(s)	2492
AccBSI	CCGCTC	1 cut(s)	2434
AccI	GTMKAC	2 cut(s)	1253, 1297
AccII	CGCG	1 cut(s)	2952
AciI	CCGC	9 cut(s)	278, 414, 795, 1774, 2311, 2434, 2919, 3175, 3339
AclI	AACGTT	2 cut(s)	1047, 2290
AclWI	GGATC	2 cut(s)	1212, 1958
AcoI	YGGCCR	1 cut(s)	1974
AcuI	CTGAAG	5 cut(s)	23, 355, 1214, 2040, 3188
AcvI	CACGTG	2 cut(s)	2519, 3298
AfaI	GTAC	7 cut(s)	119, 242, 777, 1104, 1714, 2305, 2982
AfiI	CCNNNNNNNGG	8 cut(s)	680, 698, 886, 1292, 2108, 2492, 3288, 3353
AflII	CTTAAG	1 cut(s)	1945
AflIII	ACRYGT	4 cut(s)	608, 2516, 2950, 2977
AhlI	ACTAGT	1 cut(s)	1715
AjiI	CACGTC	1 cut(s)	1668
AjnI	CCWGG	4 cut(s)	857, 994, 2080, 3310
AjuI	GAANNNNNNNTTGG	4 cut(s)	1826, 1858, 2908, 2940
Alw21I	GWGCWC	4 cut(s)	631, 706, 2077, 3215
Alw26I	GTCTC	4 cut(s)	468, 919, 1984, 3376
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	2 cut(s)	1212, 1958
AlwNI	CAGNNNCTG	2 cut(s)	908, 2591
Ama87I	CYCGRG	3 cut(s)	3208, 3214, 3383
AoxI	GGCC	5 cut(s)	569, 800, 1974, 2056, 3362
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	8 cut(s)	385, 1259, 1913, 2399, 2482, 2663, 3116, 3239
AseI	ATTAAT	1 cut(s)	2501
Asp700I	GAANNNNTTC	2 cut(s)	308, 2602
AspA2I	CCTAGG	1 cut(s)	566
AspS9I	GGNCC	8 cut(s)	710, 800, 2099, 2171, 3182, 3292, 3314, 3362
AsuC2I	CCSGG	4 cut(s)	578, 1653, 3384, 3385
AsuHPI	GGTGA	5 cut(s)	155, 1151, 1865, 2171, 2919
AsuNHI	GCTAGC	2 cut(s)	1244, 2894
AvaI	CYCGRG	3 cut(s)	3208, 3214, 3383
AvaII	GGWCC	6 cut(s)	710, 2099, 2171, 3182, 3292, 3314
AvrII	CCTAGG	1 cut(s)	566
BaeGI	GKGCMC	3 cut(s)	631, 820, 1547
BanI	GGYRCC	3 cut(s)	815, 1127, 1525
BanII	GRGCYC	2 cut(s)	2077, 3215
BarI	GAAGNNNNNNTAC	4 cut(s)	224, 256, 1911, 1943
BauI	CACGAG	1 cut(s)	23
BbrPI	CACGTG	2 cut(s)	2519, 3298
BbsI	GAAGAC	2 cut(s)	1464, 1926
Bbv12I	GWGCWC	4 cut(s)	631, 706, 2077, 3215
BbvCI	CCTCAGC	1 cut(s)	3376
BbvI	GCAGC	8 cut(s)	397, 1271, 1900, 2386, 2494, 2675, 3128, 3251
BceAI	ACGGC	4 cut(s)	915, 1926, 1961, 3165
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 1238, 1272
BciT130I	CCWGG	4 cut(s)	859, 996, 2082, 3312
BciVI	GTATCC	1 cut(s)	3042
BcnI	CCSGG	4 cut(s)	578, 1653, 3384, 3385
BcoDI	GTCTC	4 cut(s)	468, 919, 1984, 3376
BcuI	ACTAGT	1 cut(s)	1715
BfmI	CTRYAG	2 cut(s)	1257, 1914
BfrI	CTTAAG	1 cut(s)	1945
BfuI	GTATCC	1 cut(s)	3042
BlnI	CCTAGG	1 cut(s)	566
Bme1390I	CCNGG	8 cut(s)	578, 859, 996, 1653, 2082, 3312, 3384, 3385
Bme18I	GGWCC	6 cut(s)	710, 2099, 2171, 3182, 3292, 3314
BmeT110I	CYCGRG	3 cut(s)	3208, 3214, 3383
BmgBI	CACGTC	1 cut(s)	1668
BmgT120I	GGNCC	8 cut(s)	710, 800, 2099, 2171, 3182, 3292, 3314, 3362
BmiI	GGNNCC	9 cut(s)	817, 1129, 1527, 2026, 2100, 2652, 3021, 3184, 3293
BmrFI	CCNGG	8 cut(s)	578, 859, 996, 1653, 2082, 3312, 3384, 3385
BmrI	ACTGGG	3 cut(s)	486, 1310, 1799
BmsI	GCATC	8 cut(s)	625, 750, 1372, 1471, 1636, 2189, 2236, 3070
BmtI	GCTAGC	2 cut(s)	1248, 2898
BmuI	ACTGGG	3 cut(s)	486, 1310, 1799
BpiI	GAAGAC	2 cut(s)	1464, 1926
BpmI	CTGGAG	3 cut(s)	2388, 2613, 2643
Bpu10I	CCTNAGC	3 cut(s)	811, 2094, 3376
BpuEI	CTTGAG	2 cut(s)	1921, 2673
BpuMI	CCSGG	4 cut(s)	578, 1653, 3384, 3385
BsaAI	YACGTR	3 cut(s)	609, 2519, 3298
BsaBI	GATNNNNATC	1 cut(s)	1095
BsaI	GGTCTC	1 cut(s)	919
BsaWI	WCCGGW	1 cut(s)	1490
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 715, 745, 1715, 1745
Bsc4I	CCNNNNNNNGG	8 cut(s)	680, 698, 886, 1292, 2108, 2492, 3288, 3353
Bse3DI	GCAATG	2 cut(s)	2467, 3158
Bse8I	GATNNNNATC	1 cut(s)	1095
BseBI	CCWGG	4 cut(s)	859, 996, 2082, 3312
BseJI	GATNNNNATC	1 cut(s)	1095
BseLI	CCNNNNNNNGG	8 cut(s)	680, 698, 886, 1292, 2108, 2492, 3288, 3353
BseMI	GCAATG	2 cut(s)	2467, 3158
BseMII	CTCAG	4 cut(s)	25, 2268, 2867, 3390
BseRI	GAGGAG	5 cut(s)	723, 2067, 2643, 2646, 3364
BseSI	GKGCMC	3 cut(s)	631, 820, 1547
BseXI	GCAGC	8 cut(s)	397, 1271, 1900, 2386, 2494, 2675, 3128, 3251
BseYI	CCCAGC	2 cut(s)	797, 2295
BsgI	GTGCAG	1 cut(s)	2385
Bsh1236I	CGCG	1 cut(s)	2952
Bsh1285I	CGRYCG	1 cut(s)	1657
BshFI	GGCC	5 cut(s)	571, 802, 1976, 2058, 3364
BshNI	GGYRCC	3 cut(s)	815, 1127, 1525
BsiEI	CGRYCG	1 cut(s)	1657
BsiHKAI	GWGCWC	4 cut(s)	631, 706, 2077, 3215
BsiHKCI	CYCGRG	3 cut(s)	3208, 3214, 3383
BsiSI	CCGG	4 cut(s)	578, 1491, 1653, 3384
BslFI	GGGAC	5 cut(s)	656, 840, 1705, 2450, 3168
BslI	CCNNNNNNNGG	8 cut(s)	680, 698, 886, 1292, 2108, 2492, 3288, 3353
BsmAI	GTCTC	4 cut(s)	468, 919, 1984, 3376
BsmBI	CGTCTC	2 cut(s)	1984, 3376
BsmFI	GGGAC	5 cut(s)	656, 840, 1705, 2450, 3168
BsmI	GAATGC	4 cut(s)	2020, 2038, 2807, 2923
BsnI	GGCC	5 cut(s)	571, 802, 1976, 2058, 3364
Bso31I	GGTCTC	1 cut(s)	919
BsoBI	CYCGRG	3 cut(s)	3208, 3214, 3383
Bsp1286I	GDGCHC	6 cut(s)	631, 706, 820, 1547, 2077, 3215
Bsp143I	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
Bsp19I	CCATGG	1 cut(s)	2043
BspACI	CCGC	9 cut(s)	278, 414, 795, 1774, 2311, 2434, 2919, 3175, 3339
BspANI	GGCC	5 cut(s)	571, 802, 1976, 2058, 3364
BspCNI	CTCAG	4 cut(s)	24, 2269, 2866, 3389
BspFNI	CGCG	1 cut(s)	2952
BspHI	TCATGA	1 cut(s)	1519
BspLI	GGNNCC	9 cut(s)	817, 1129, 1527, 2026, 2100, 2652, 3021, 3184, 3293
BspMAI	CTGCAG	2 cut(s)	1261, 1918
BspOI	GCTAGC	2 cut(s)	1248, 2898
BspPI	GGATC	2 cut(s)	1212, 1958
BspQI	GCTCTTC	1 cut(s)	321
BspT107I	GGYRCC	3 cut(s)	815, 1127, 1525
BspTI	CTTAAG	1 cut(s)	1945
BspTNI	GGTCTC	1 cut(s)	919
BsrBI	CCGCTC	1 cut(s)	2434
BsrDI	GCAATG	2 cut(s)	2467, 3158
BssMI	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
BssNAI	GTATAC	1 cut(s)	1254
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	3 cut(s)	273, 566, 2043
Bst1107I	GTATAC	1 cut(s)	1254
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	4 cut(s)	859, 996, 2082, 3312
Bst4CI	ACNGT	9 cut(s)	73, 710, 790, 827, 1222, 1800, 1932, 2054, 3235
Bst6I	CTCTTC	6 cut(s)	48, 321, 473, 917, 2731, 2783
BstAFI	CTTAAG	1 cut(s)	1945
BstAPI	GCANNNNNTGC	4 cut(s)	1114, 1327, 1682, 2396
BstBAI	YACGTR	3 cut(s)	609, 2519, 3298
BstC8I	GCNNGC	5 cut(s)	1246, 1974, 2896, 2921, 2998
BstDEI	CTNAG	7 cut(s)	11, 408, 811, 2094, 2277, 2853, 3376
BstDSI	CCRYGG	2 cut(s)	2043, 2053
BstENI	CCTNNNNNAGG	1 cut(s)	1290
BstFNI	CGCG	1 cut(s)	2952
BstKTI	GATC	9 cut(s)	268, 1207, 1408, 1661, 1897, 1953, 2283, 3303, 3394
BstMAI	GTCTC	4 cut(s)	468, 919, 1984, 3376
BstMBI	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
BstMCI	CGRYCG	1 cut(s)	1657
BstNI	CCWGG	4 cut(s)	859, 996, 2082, 3312
BstNSI	RCATGY	1 cut(s)	2981
BstSCI	CCNGG	8 cut(s)	576, 857, 994, 1651, 2080, 3310, 3382, 3383
BstSFI	CTRYAG	2 cut(s)	1257, 1914
BstSLI	GKGCMC	3 cut(s)	631, 820, 1547
BstUI	CGCG	1 cut(s)	2952
BstV1I	GCAGC	8 cut(s)	397, 1271, 1900, 2386, 2494, 2675, 3128, 3251
BstV2I	GAAGAC	2 cut(s)	1464, 1926
BstX2I	RGATCY	1 cut(s)	1204
BstXI	CCANNNNNNTGG	2 cut(s)	611, 2478
BstYI	RGATCY	1 cut(s)	1204
BstZ17I	GTATAC	1 cut(s)	1254
BsuI	GTATCC	1 cut(s)	3042
BsuRI	GGCC	5 cut(s)	571, 802, 1976, 2058, 3364
BtgI	CCRYGG	2 cut(s)	2043, 2053
BtrI	CACGTC	1 cut(s)	1668
BtsI	GCAGTG	1 cut(s)	3050
BtsIMutI	CAGTG	6 cut(s)	832, 1218, 2136, 2181, 2290, 3050
Cac8I	GCNNGC	5 cut(s)	1246, 1974, 2896, 2921, 2998
CaiI	CAGNNNCTG	2 cut(s)	908, 2591
CciI	TCATGA	1 cut(s)	1519
Cfr13I	GGNCC	8 cut(s)	710, 800, 2099, 2171, 3182, 3292, 3314, 3362
Cfr9I	CCCGGG	1 cut(s)	3383
CseI	GACGC	2 cut(s)	842, 3358
CsiI	ACCWGGT	1 cut(s)	3310
Csp6I	GTAC	7 cut(s)	118, 241, 776, 1103, 1713, 2304, 2981
CviQI	GTAC	7 cut(s)	118, 241, 776, 1103, 1713, 2304, 2981
DdeI	CTNAG	7 cut(s)	11, 408, 811, 2094, 2277, 2853, 3376
DpnI	GATC	9 cut(s)	267, 1206, 1407, 1660, 1896, 1952, 2282, 3302, 3393
DpnII	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
DraI	TTTAAA	1 cut(s)	1195
EaeI	YGGCCR	1 cut(s)	1974
Eam1104I	CTCTTC	6 cut(s)	48, 321, 473, 917, 2731, 2783
EarI	CTCTTC	6 cut(s)	48, 321, 473, 917, 2731, 2783
Ecl136II	GAGCTC	2 cut(s)	2075, 3213
Eco130I	CCWWGG	3 cut(s)	273, 566, 2043
Eco147I	AGGCCT	1 cut(s)	571
Eco24I	GRGCYC	2 cut(s)	2077, 3215
Eco31I	GGTCTC	1 cut(s)	919
Eco47I	GGWCC	6 cut(s)	710, 2099, 2171, 3182, 3292, 3314
Eco53kI	GAGCTC	2 cut(s)	2075, 3213
Eco57I	CTGAAG	5 cut(s)	23, 355, 1214, 2040, 3188
Eco72I	CACGTG	2 cut(s)	2519, 3298
Eco88I	CYCGRG	3 cut(s)	3208, 3214, 3383
EcoICRI	GAGCTC	2 cut(s)	2075, 3213
EcoNI	CCTNNNNNAGG	1 cut(s)	1290
EcoO109I	RGGNCCY	1 cut(s)	2099
EcoRI	GAATTC	2 cut(s)	502, 1859
EcoRII	CCWGG	4 cut(s)	857, 994, 2080, 3310
EcoT14I	CCWWGG	3 cut(s)	273, 566, 2043
EcoT38I	GRGCYC	2 cut(s)	2077, 3215
ErhI	CCWWGG	3 cut(s)	273, 566, 2043
Esp3I	CGTCTC	2 cut(s)	1984, 3376
FaqI	GGGAC	5 cut(s)	656, 840, 1705, 2450, 3168
FauI	CCCGC	1 cut(s)	2912
FblI	GTMKAC	2 cut(s)	1253, 1297
FriOI	GRGCYC	2 cut(s)	2077, 3215
GsaI	CCCAGC	2 cut(s)	801, 2299
GsuI	CTGGAG	3 cut(s)	2388, 2613, 2643
HaeIII	GGCC	5 cut(s)	571, 802, 1976, 2058, 3364
HapII	CCGG	4 cut(s)	578, 1491, 1653, 3384
HgaI	GACGC	2 cut(s)	842, 3358
HincII	GTYRAC	2 cut(s)	601, 1402
HindII	GTYRAC	2 cut(s)	601, 1402
HindIII	AAGCTT	1 cut(s)	1189
HpaII	CCGG	4 cut(s)	578, 1491, 1653, 3384
HphI	GGTGA	5 cut(s)	155, 1151, 1865, 2171, 2919
Hpy99I	CGWCG	1 cut(s)	1672
HpyCH4III	ACNGT	9 cut(s)	73, 710, 790, 827, 1222, 1800, 1932, 2054, 3235
HpyCH4IV	ACGT	7 cut(s)	608, 1047, 1667, 2290, 2518, 2817, 3297
HpyF3I	CTNAG	7 cut(s)	11, 408, 811, 2094, 2277, 2853, 3376
HpySE526I	ACGT	7 cut(s)	608, 1047, 1667, 2290, 2518, 2817, 3297
Kzo9I	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	9 cut(s)	736, 1122, 1763, 2080, 2656, 2868, 3025, 3356, 3385
Lsp1109I	GCAGC	8 cut(s)	397, 1271, 1900, 2386, 2494, 2675, 3128, 3251
LweI	GCATC	8 cut(s)	625, 750, 1372, 1471, 1636, 2189, 2236, 3070
MabI	ACCWGGT	1 cut(s)	3310
MaeII	ACGT	7 cut(s)	608, 1047, 1667, 2290, 2518, 2817, 3297
MaeIII	GTNAC	8 cut(s)	6, 133, 985, 1444, 1486, 2185, 2794, 3073
MalI	GATC	9 cut(s)	267, 1206, 1407, 1660, 1896, 1952, 2282, 3302, 3393
MbiI	CCGCTC	1 cut(s)	2434
MboI	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
MflI	RGATCY	1 cut(s)	1204
MhlI	GDGCHC	6 cut(s)	631, 706, 820, 1547, 2077, 3215
MluI	ACGCGT	1 cut(s)	2950
MlyI	GAGTC	8 cut(s)	101, 871, 1072, 1291, 1739, 2155, 2717, 3068
MmeI	TCCRAC	4 cut(s)	63, 661, 893, 3253
MroXI	GAANNNNTTC	2 cut(s)	308, 2602
MslI	CAYNNNNRTG	5 cut(s)	609, 621, 1011, 1670, 2141
MspA1I	CMGCKG	2 cut(s)	140, 797
MspCI	CTTAAG	1 cut(s)	1945
MspI	CCGG	4 cut(s)	578, 1491, 1653, 3384
MspR9I	CCNGG	8 cut(s)	578, 859, 996, 1653, 2082, 3312, 3384, 3385
Mva1269I	GAATGC	4 cut(s)	2020, 2038, 2807, 2923
MvaI	CCWGG	4 cut(s)	859, 996, 2082, 3312
MvnI	CGCG	1 cut(s)	2952
NciI	CCSGG	4 cut(s)	578, 1653, 3384, 3385
NcoI	CCATGG	1 cut(s)	2043
NdeII	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
NheI	GCTAGC	2 cut(s)	1244, 2894
NlaIV	GGNNCC	9 cut(s)	817, 1129, 1527, 2026, 2100, 2652, 3021, 3184, 3293
NmuCI	GTSAC	5 cut(s)	6, 985, 1444, 2794, 3073
NspI	RCATGY	1 cut(s)	2981
PaeR7I	CTCGAG	1 cut(s)	3214
PagI	TCATGA	1 cut(s)	1519
PceI	AGGCCT	1 cut(s)	571
PciI	ACATGT	1 cut(s)	2977
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	4 cut(s)	2020, 2038, 2807, 2923
PdmI	GAANNNNTTC	2 cut(s)	308, 2602
PflMI	CCANNNNNTGG	1 cut(s)	2492
PleI	GAGTC	8 cut(s)	100, 870, 1071, 1290, 1738, 2154, 2717, 3067
PmaCI	CACGTG	2 cut(s)	2519, 3298
PmlI	CACGTG	2 cut(s)	2519, 3298
PpsI	GAGTC	8 cut(s)	100, 870, 1071, 1290, 1738, 2154, 2717, 3067
Ppu21I	YACGTR	3 cut(s)	609, 2519, 3298
PpuMI	RGGWCCY	1 cut(s)	2099
PscI	ACATGT	1 cut(s)	2977
PshBI	ATTAAT	1 cut(s)	2501
Psp124BI	GAGCTC	2 cut(s)	2077, 3215
Psp1406I	AACGTT	2 cut(s)	1047, 2290
Psp5II	RGGWCCY	1 cut(s)	2099
Psp6I	CCWGG	4 cut(s)	857, 994, 2080, 3310
PspCI	CACGTG	2 cut(s)	2519, 3298
PspFI	CCCAGC	2 cut(s)	797, 2295
PspGI	CCWGG	4 cut(s)	857, 994, 2080, 3310
PspN4I	GGNNCC	9 cut(s)	817, 1129, 1527, 2026, 2100, 2652, 3021, 3184, 3293
PspPI	GGNCC	8 cut(s)	710, 800, 2099, 2171, 3182, 3292, 3314, 3362
PspPPI	RGGWCCY	1 cut(s)	2099
PstI	CTGCAG	2 cut(s)	1261, 1918
PstNI	CAGNNNCTG	2 cut(s)	908, 2591
PsuI	RGATCY	1 cut(s)	1204
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	7 cut(s)	119, 242, 777, 1104, 1714, 2305, 2982
RsaNI	GTAC	7 cut(s)	118, 241, 776, 1103, 1713, 2304, 2981
RseI	CAYNNNNRTG	5 cut(s)	609, 621, 1011, 1670, 2141
SacI	GAGCTC	2 cut(s)	2077, 3215
SapI	GCTCTTC	1 cut(s)	321
Sau3AI	GATC	9 cut(s)	265, 1204, 1405, 1658, 1894, 1950, 2280, 3300, 3391
Sau96I	GGNCC	8 cut(s)	710, 800, 2099, 2171, 3182, 3292, 3314, 3362
SchI	GAGTC	8 cut(s)	101, 871, 1072, 1291, 1739, 2155, 2717, 3068
ScrFI	CCNGG	8 cut(s)	578, 859, 996, 1653, 2082, 3312, 3384, 3385
SduI	GDGCHC	6 cut(s)	631, 706, 820, 1547, 2077, 3215
SexAI	ACCWGGT	1 cut(s)	3310
SfaNI	GCATC	8 cut(s)	625, 750, 1372, 1471, 1636, 2189, 2236, 3070
SfcI	CTRYAG	2 cut(s)	1257, 1914
Sfr274I	CTCGAG	1 cut(s)	3214
SinI	GGWCC	6 cut(s)	710, 2099, 2171, 3182, 3292, 3314
SlaI	CTCGAG	1 cut(s)	3214
SmaI	CCCGGG	1 cut(s)	3385
SmiMI	CAYNNNNRTG	5 cut(s)	609, 621, 1011, 1670, 2141
SmlI	CTYRAG	4 cut(s)	1900, 1945, 2688, 3214
SmoI	CTYRAG	4 cut(s)	1900, 1945, 2688, 3214
SpeI	ACTAGT	1 cut(s)	1715
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	9 cut(s)	278, 414, 795, 1774, 2311, 2434, 2919, 3175, 3339
SspI	AATATT	2 cut(s)	216, 1564
SstI	GAGCTC	2 cut(s)	2077, 3215
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	8 cut(s)	576, 857, 994, 1651, 2080, 3310, 3382, 3383
StyI	CCWWGG	3 cut(s)	273, 566, 2043
TaaI	ACNGT	9 cut(s)	73, 710, 790, 827, 1222, 1800, 1932, 2054, 3235
TaiI	ACGT	7 cut(s)	611, 1050, 1670, 2293, 2521, 2820, 3300
TaqI	TCGA	8 cut(s)	48, 222, 314, 1657, 1670, 1821, 3215, 3303
TatI	WGTACW	2 cut(s)	1102, 2980
TauI	GCSGC	2 cut(s)	2314, 3177
TscAI	CASTG	6 cut(s)	832, 1225, 2143, 2181, 2290, 3050
TseFI	GTSAC	5 cut(s)	6, 985, 1444, 2794, 3073
TseI	GCWGC	8 cut(s)	385, 1259, 1913, 2399, 2482, 2663, 3116, 3239
Tsp45I	GTSAC	5 cut(s)	6, 985, 1444, 2794, 3073
TspGWI	ACGGA	5 cut(s)	1378, 1528, 2010, 3237, 3369
TspMI	CCCGGG	1 cut(s)	3383
TspRI	CASTG	6 cut(s)	832, 1225, 2143, 2181, 2290, 3050
Van91I	CCANNNNNTGG	1 cut(s)	2492
Vha464I	CTTAAG	1 cut(s)	1945
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	6 cut(s)	710, 2099, 2171, 3182, 3292, 3314
VspI	ATTAAT	1 cut(s)	2501
XagI	CCTNNNNNAGG	1 cut(s)	1290
XbaI	TCTAGA	5 cut(s)	506, 1184, 1372, 1631, 2069
XceI	RCATGY	1 cut(s)	2981
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1084, 2475, 3269, 3324
XhoI	CTCGAG	1 cut(s)	3214
XmaI	CCCGGG	1 cut(s)	3383
XmaJI	CCTAGG	1 cut(s)	566
XmiI	GTMKAC	2 cut(s)	1253, 1297
XmnI	GAANNNNTTC	2 cut(s)	308, 2602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.