Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001857

Physical Location & Seq

Genomic Coordinates Forward (+)

52200406 .. 52210235

Gene Structure 9830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019456

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGTCGATCAACTTAAGGAGAGAGCACGTTCTTCTTTTGCTCGAGTACTTGGAGGGAGAGGAATACAAAGAGACTGTTCATACGTTGGAGAAAGAGTCAGGGTTTTTCTTCAACATGAAGTACTTTGAGGAGTGTGTTACTAATGGTGACTGGGATGGGGTGGAGAATTATCTGTCCGGGTTTACTAAGCTTGATGAAAATGAATACTCCATGAAGATTTTCTTTGAGATTCGGAAACAAAGATACCTTGAGGCTCTTGACAGGCACGACCATACTAAAGCTGTTGAGATTCTTCAGAAGGATTTGAAACTGTTCTCTGGACATAACGAAGGGATTTATAAAGAATTAGCGCTGCTTCTGACGTTTGAGAATTTCAGGGAGAATGATCAACTATCAAAACAAAGAAATACTAACTTTGCGAGGGCAAATATGCTTGATGTAGTAAAAGAGTTAATTGAGTTAAATCCAGTCTTCCATGATAAGCTTCAGTACCCCAGCTTTAAGAAATCAAGGCTGAAGGGCCTTATAAATCAAAGTTTAAATTGGCAGCACTACCTTTGCACAAATTCTAAGCAAGACCCTGACATTAAAACTCTATTCCATGACCATTCTTGTGGGCCAATGGCTTTCAACACATCCCCTGTAACTAAACCTTTAAAGCGCTCCCTACCTAAAGCAGGTCACTTCCCACCTAAAGCAGGTCGCTTCCCACCCAAAGGCGGTCATGGTCCATCTCAGCCAGCAGCAGAACAACATACAGCATCTCTTGCTGGATGGATAGCTAAGCCGTCCTCTGTGCCACACCAAATGGTTACTGCAGGACCAATTGGTCTAACTGCTCCCAATTATGCACCATCTTTTCTCAAGTGGATTCCTCTCACTAATAACCCAGCAATAGACTGTCAAATTGCAGGTGCTGAACATGTGTTCAAGAGATCAACAGCTTCTGGGGTATTAGATGAGGTCAATAAGATGCCACTTGATGTGCTTCCAGTCACATTTCCTGGCCACAGCACCCACACACTTTATGCTTCTGGGGAGTTGCCCAAGATTGTAATTGCCAACTTTAATCAGGGTTCTACTGTCATGAGCATGGATTTTCATCCACAGCAACAGTCTTTGCTTCTTGTGGGGACAAACATTGGTGATATAACTGTTTGGGAGGTAGGCAGCAAGCTGAGGCTTCTTTCTCGGAGTTTCAATATTTGGGATGTTGCTGCATGCTCAGCTACTTTGCAGGTATCTTTGGTCCATGCATCCACTGCATCAGTAAATCGTGTAATCTGGAGTCCTGATGGTTTCTTTATAGGTGTTGCATATTCCATGCATCTAGTGCACGTATATTCCTATAATGGCAGGGATGATTTGCGTGACCACTTGGAGATTGCTGCACATGTGGGTAATGTTACTGATCTTGCTTTCTCTCACCTGAACAAACAATTATGCATCACAAGTTGTGGAGAGGACAAGATTATTAAGGTCTGGGATGGTGCAACTGGTGAGAAGCTGTATACTTTCGAAGGTCATGAGGCACCAGTTTATTCTGTGTATACACACAGGAAGGAAAACATTCCGTTCATCTTCTCAACAGCTTTTGATGGGAAAATCAAGGCATGGGTTTATTATGAGAGGGGTCCAGTTGTTGAATATGATGCTCCAGGCCATGCATGCATAAAAATGGCCTATAGTACTGATGGAAAAAGGCTATTCTCATGTGGAACAAGCAAGCAAAGGGAGTCATACCTTCTGGAATGGAATGCCGAAGAGGGGGAAGTTAAGCGAGTTTATAATGGGCTTGGGAAGTGGACAGTGGGGATTGTGCAATTTGATACAACAAAAAACCGATTCTTGGTTGCTGGTGATGATTTCCATATAAAGTTTTGGGAAATGGACAATGTGGACCTGTTGGACTCCATTGATGCCGGTGGTGGATTACCGGCGTCTCCTTGTGTACGATTTAACAAGGACGGAATCTTGTTAGCTGTTTCAACAAATGATAATGGTATTAAAGTACTTGCAAATGCCAATGGCATTGACAGTTTGCGTTCCATTGGGCATTGTGCAATTGATGCCGATAGGATCACTTCTGGAACCCCTGTGAAGGGACCAGTAGTTCACACATTTGGTGCTTCCAGTTCTCCCGGAACAAATAATGGGATTGCAGATAGAAATGCACTGATGTCTTTGGTGGTTAACCCCAATCGAGACAGCCGAAGTTATGTTGAAGGGAAATGGAGAGTTTCTGATGAGTTAGAGAAGTCTAAATTTAGAAAGATGACAGTAGTTAATGAACCATCTCATCTTCGTTCCCTACGGCTTCCTGATAGTCTGTTGCCAAGCAGGATTGTTAGGTTGATATATGCAAAATCTGGAGCGATACTGGCATTGACTCATAGTGGGGTACATAAACTTTGGATTTGGAAGAATGAGCAGAATGTTTTGGGAAAGGGAACTACTATTGTGCCACCAGAGTTCTTAAAATCTCAAATTGGAATATCGATGACCAATGATATACTTGAGACACATTGTGAAGATTCTGTTGCTTGCTTTGCAGTTTCAAAGAATGAGTCTTTTCTTGTGTCTGCATCAGGAGGGGAAATCTCTATTTTCAATATGATAACTTTCAAGAGGATGATATCCTTTAAGCCCTCACCATCAGCAGCAACATGTCTTGCCTTCAAACCACAGGATAATAACTTCATTGCCATAGGCATGGAGGATTCAACAATTCACATCTACAATGTCAACACTGGCGAGGTCAATCCCACGATCAAAGGTCATCATGAGAGAGTAATGGGCCTAGCCTTCTCCACTATTCTAAACGTTCTGGTTTCATCAGGAGCTGATTCTGAGCTGATGGTTTGGAGCCTGGATGGATGGGAAAAGCAGGCTGGTAAGCTCTTGAAGATTCCTGCTGGTCGTTTGTCTAAACCTCCTGCTCAGATCGGCATTAAATTCCAGAAAGATGAGATACACCTTCTAGTTATACAGGACACCCAGTTAGCCATATTTGAAGCATCAAAGTTGGAGTGCCTTGAGCAGTGGGTGCCTCGAGCATCTATTGGTCTTATCACAGATGCTACATATTCATGCGATTGCCAGTCAGTCTATGCAACCTTTGAAGATGGAAATGTGTCAATTTTAACTATCCCCTCTTTCGAACTCCGATGTCGGATATACCCTACTGCATATCTACCTTCTAGTCCAAGTAGAATGGTATACCCATCTGCAGTTGCGGCTCATCCATCTGAACCTAATCAGTTTGCCATTGGACTTAGTGATGGTGGAGTTGTGGTTCTTGAGCCTCCAGAATCAACGGAGCAATGGGGATCTATGCCTCCGGTCGAGAGTGCAGGGCATAGCACTAGACCTAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1127

Amino Acids

124.92

Weight (kDa)

6.37

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR1-like_2nd	PF21889	38 - 162	3.3e-52	TPR1-like, CTLH-containing domain
zf_topless	PF21359	165 - 205	5.1e-21	TOPLESS, zinc finger domain
Beta-prop_WDR3_2nd	PF25172	360 - 576	1.1e-08	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	400 - 516	5.1e-12	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	400 - 577	3.4e-17	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	401 - 573	6.7e-10	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	402 - 671	8.4e-08	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	419 - 631	6.6e-17	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	422 - 677	7e-22	THOC3 beta-propeller domain
WDR55	PF24796	423 - 550	4.2e-06	WDR55
WD40_WDHD1_1st	PF24817	438 - 541	3.9e-09	WDHD1 first WD40 domain
WD40_Prp19	PF24814	837 - 958	7.6e-12	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	839 - 961	7.2e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	840 - 1054	2.7e-15	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	842 - 959	3.3e-12	CDC20/Fizzy WD40 domain
WDR55	PF24796	842 - 957	8.8e-06	WDR55
WD40_WDHD1_1st	PF24817	842 - 1047	1e-12	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	844 - 961	2.6e-12	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	845 - 957	8.4e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	847 - 964	2e-12	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	856 - 957	2.1e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	859 - 957	8.8e-16	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	859 - 958	5.9e-11	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	861 - 959	1.5e-06	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	864 - 960	3.6e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	887 - 1053	2.5e-08	WDR36/Utp21 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15880 AT3G15880 AT3G15880 AT3G15880
fragaria_vesca	FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730
malus_domestica	MD02G1027700.v1.1 MD11G1043800.v1.1 MD15G1169300.v1.1
prunus_persica	Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1
pyrus_communis	pycom12419g00020
rosa_chinensis	RchiOBHm_Chr2g0087841
rosa_laevigata	RLG00000015906 RLG00000019456
rosa_multiflora	Rmu_sc0008385.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153180
rosa_rugosa	Rorug01G0479000 Rorug01G0479000 Rorug02G0324100 Rorug02G0324100
rosa_samantha	Rh2BG032700
rosa_wichuraiana	Rw2G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	339, 527, 1788
AarI	CACCTGC	1 cut(s)	902
AasI	GACNNNNNNGTC	1 cut(s)	828
Acc36I	ACCTGC	4 cut(s)	668, 689, 902, 1228
AccB1I	GGYRCC	2 cut(s)	1531, 3046
AccI	GTMKAC	3 cut(s)	1511, 1550, 3219
AciI	CCGC	2 cut(s)	720, 3236
AclI	AACGTT	1 cut(s)	2823
AclWI	GGATC	2 cut(s)	2087, 3337
AcoI	YGGCCR	1 cut(s)	1006
AcsI	RAATTY	4 cut(s)	370, 565, 2264, 2954
AcuI	CTGAAG	3 cut(s)	278, 470, 536
AcyI	GRCGYC	1 cut(s)	1940
AdeI	CACNNNGTG	1 cut(s)	2528
AfaI	GTAC	7 cut(s)	47, 122, 491, 1690, 1953, 2013, 2403
AfeI	AGCGCT	2 cut(s)	351, 662
AfiI	CCNNNNNNNGG	8 cut(s)	677, 698, 716, 719, 1767, 1849, 2101, 2102
AflII	CTTAAG	1 cut(s)	13
AflIII	ACRYGT	3 cut(s)	922, 1393, 2666
AjnI	CCWGG	3 cut(s)	1003, 1657, 2868
AloI	GAACNNNNNNTCC	4 cut(s)	2097, 2129, 3279, 3311
Alw21I	GWGCWC	2 cut(s)	27, 1338
Alw26I	GTCTC	4 cut(s)	65, 1947, 2199, 2513
Alw44I	GTGCAC	1 cut(s)	1334
AlwI	GGATC	2 cut(s)	2087, 3337
AlwNI	CAGNNNCTG	3 cut(s)	917, 947, 2843
Ama87I	CYCGRG	2 cut(s)	41, 3051
Aor51HI	AGCGCT	2 cut(s)	351, 662
AoxI	GGCC	6 cut(s)	520, 617, 1006, 1660, 1680, 2797
ApaLI	GTGCAC	1 cut(s)	1334
ApeKI	GCWGC	7 cut(s)	352, 547, 743, 1170, 1217, 1388, 2660
ApoI	RAATTY	4 cut(s)	370, 565, 2264, 2954
ArsI	GACNNNNNNTTYG	2 cut(s)	2552, 2584
Asp700I	GAANNNNTTC	3 cut(s)	218, 311, 1569
AspLEI	GCGC	2 cut(s)	352, 663
AspS9I	GGNCC	9 cut(s)	520, 617, 728, 821, 1249, 1634, 1900, 2105, 2797
AsuC2I	CCSGG	2 cut(s)	178, 2142
AsuHPI	GGTGA	6 cut(s)	158, 1157, 1418, 1511, 1871, 2643
AsuII	TTCGAA	2 cut(s)	1518, 3159
AvaI	CYCGRG	2 cut(s)	41, 3051
AvaII	GGWCC	6 cut(s)	728, 821, 1249, 1634, 1900, 2105
BaeGI	GKGCMC	1 cut(s)	1338
BalI	TGGCCA	1 cut(s)	1008
BanI	GGYRCC	2 cut(s)	1531, 3046
BbsI	GAAGAC	1 cut(s)	463
Bbv12I	GWGCWC	2 cut(s)	27, 1338
BbvCI	CCTCAGC	1 cut(s)	1178
BbvI	GCAGC	7 cut(s)	339, 559, 755, 1182, 1204, 1375, 2672
BceAI	ACGGC	2 cut(s)	772, 2330
BciT130I	CCWGG	3 cut(s)	1005, 1659, 2870
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	178, 2142
BcoDI	GTCTC	4 cut(s)	65, 1947, 2199, 2513
BfaI	CTAG	6 cut(s)	1331, 2801, 2981, 3201, 3366, 3372
BfmI	CTRYAG	3 cut(s)	816, 1684, 3228
BfoI	RGCGCY	2 cut(s)	353, 664
BfrI	CTTAAG	1 cut(s)	13
BfuAI	ACCTGC	4 cut(s)	668, 689, 902, 1228
BisI	GCNGC	8 cut(s)	353, 548, 744, 1171, 1218, 1389, 2661, 3237
BlpI	GCTNAGC	2 cut(s)	783, 1225
BlsI	GCNGC	8 cut(s)	354, 549, 745, 1172, 1219, 1390, 2662, 3238
BmcAI	AGTACT	4 cut(s)	47, 122, 1690, 2013
Bme1390I	CCNGG	5 cut(s)	178, 1005, 1659, 2142, 2870
Bme18I	GGWCC	6 cut(s)	728, 821, 1249, 1634, 1900, 2105
BmeT110I	CYCGRG	2 cut(s)	41, 3051
BmgT120I	GGNCC	9 cut(s)	520, 617, 728, 821, 1249, 1634, 1900, 2105, 2797
BmiI	GGNNCC	6 cut(s)	1533, 1635, 2092, 2106, 2867, 3048
BmrFI	CCNGG	5 cut(s)	178, 1005, 1659, 2142, 2870
BmrI	ACTGGG	2 cut(s)	160, 2992
BmuI	ACTGGG	2 cut(s)	160, 2992
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	4 cut(s)	1306, 1641, 2391, 3291
Bpu10I	CCTNAGC	1 cut(s)	1178
Bpu1102I	GCTNAGC	2 cut(s)	783, 1225
Bpu14I	TTCGAA	2 cut(s)	1518, 3159
BpuEI	CTTGAG	5 cut(s)	269, 848, 2537, 3056, 3320
BpuMI	CCSGG	2 cut(s)	178, 2142
Bsa29I	ATCGAT	1 cut(s)	2498
BsaAI	YACGTR	1 cut(s)	1339
BsaBI	GATNNNNATC	1 cut(s)	1101
BsaHI	GRCGYC	1 cut(s)	1940
BsaWI	WCCGGW	1 cut(s)	3340
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 3279, 3309
Bsc4I	CCNNNNNNNGG	8 cut(s)	677, 698, 716, 719, 1767, 1849, 2101, 2102
Bse118I	RCCGGY	2 cut(s)	1922, 1936
Bse3DI	GCAATG	2 cut(s)	2700, 3329
Bse8I	GATNNNNATC	1 cut(s)	1101
BseBI	CCWGG	3 cut(s)	1005, 1659, 2870
BseCI	ATCGAT	1 cut(s)	2498
BseJI	GATNNNNATC	1 cut(s)	1101
BseLI	CCNNNNNNNGG	8 cut(s)	677, 698, 716, 719, 1767, 1849, 2101, 2102
BseMI	GCAATG	2 cut(s)	2700, 3329
BseMII	CTCAG	5 cut(s)	749, 1169, 1239, 2841, 2954
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	1338
BseXI	GCAGC	7 cut(s)	339, 559, 755, 1182, 1204, 1375, 2672
BseYI	CCCAGC	2 cut(s)	494, 889
BsgI	GTGCAG	2 cut(s)	1374, 3372
Bsh1285I	CGRYCG	1 cut(s)	3345
BshFI	GGCC	6 cut(s)	522, 619, 1008, 1662, 1682, 2799
BshNI	GGYRCC	2 cut(s)	1531, 3046
BshVI	ATCGAT	1 cut(s)	2498
BsiEI	CGRYCG	1 cut(s)	3345
BsiHKAI	GWGCWC	2 cut(s)	27, 1338
BsiHKCI	CYCGRG	2 cut(s)	41, 3051
BsiSI	CCGG	5 cut(s)	177, 1923, 1937, 2142, 3341
BslFI	GGGAC	2 cut(s)	1147, 2118
BslI	CCNNNNNNNGG	8 cut(s)	677, 698, 716, 719, 1767, 1849, 2101, 2102
BsmAI	GTCTC	4 cut(s)	65, 1947, 2199, 2513
BsmBI	CGTCTC	1 cut(s)	1947
BsmFI	GGGAC	2 cut(s)	1147, 2118
BsmI	GAATGC	1 cut(s)	1762
BsnI	GGCC	6 cut(s)	522, 619, 1008, 1662, 1682, 2799
BsoBI	CYCGRG	2 cut(s)	41, 3051
Bsp119I	TTCGAA	2 cut(s)	1518, 3159
Bsp1286I	GDGCHC	2 cut(s)	27, 1338
Bsp143I	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
Bsp1720I	GCTNAGC	2 cut(s)	783, 1225
BspACI	CCGC	2 cut(s)	720, 3236
BspANI	GGCC	6 cut(s)	522, 619, 1008, 1662, 1682, 2799
BspCNI	CTCAG	5 cut(s)	748, 1170, 1238, 2842, 2953
BspDI	ATCGAT	1 cut(s)	2498
BspHI	TCATGA	3 cut(s)	1086, 1525, 2782
BspLI	GGNNCC	6 cut(s)	1533, 1635, 2092, 2106, 2867, 3048
BspMAI	CTGCAG	2 cut(s)	820, 3232
BspMI	ACCTGC	4 cut(s)	668, 689, 902, 1228
BspPI	GGATC	2 cut(s)	2087, 3337
BspT104I	TTCGAA	2 cut(s)	1518, 3159
BspT107I	GGYRCC	2 cut(s)	1531, 3046
BspTI	CTTAAG	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	2700, 3329
BsrFI	RCCGGY	2 cut(s)	1922, 1936
BssAI	RCCGGY	2 cut(s)	1922, 1936
BssMI	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
BssNAI	GTATAC	3 cut(s)	1512, 1551, 3220
BssNI	GRCGYC	1 cut(s)	1940
Bst1107I	GTATAC	3 cut(s)	1512, 1551, 3220
Bst2UI	CCWGG	3 cut(s)	1005, 1659, 2870
Bst4CI	ACNGT	9 cut(s)	76, 312, 902, 1084, 1116, 1156, 1810, 2039, 2281
Bst6I	CTCTTC	1 cut(s)	1758
BstACI	GRCGYC	1 cut(s)	1940
BstAFI	CTTAAG	1 cut(s)	13
BstAPI	GCANNNNNTGC	5 cut(s)	767, 1262, 1333, 2069, 3046
BstBAI	YACGTR	1 cut(s)	1339
BstBI	TTCGAA	2 cut(s)	1518, 3159
BstC8I	GCNNGC	7 cut(s)	741, 1175, 1222, 1669, 1727, 2545, 2889
BstDEI	CTNAG	9 cut(s)	186, 570, 735, 783, 1178, 1225, 2850, 2940, 3275
BstENI	CCTNNNNNAGG	2 cut(s)	675, 696
BstH2I	RGCGCY	2 cut(s)	353, 664
BstHHI	GCGC	2 cut(s)	352, 663
BstKTI	GATC	8 cut(s)	9, 388, 938, 1414, 2082, 2772, 2946, 3332
BstMAI	GTCTC	4 cut(s)	65, 1947, 2199, 2513
BstMBI	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
BstMCI	CGRYCG	1 cut(s)	3345
BstNI	CCWGG	3 cut(s)	1005, 1659, 2870
BstNSI	RCATGY	5 cut(s)	926, 1224, 1397, 1671, 2670
BstSCI	CCNGG	5 cut(s)	176, 1003, 1657, 2140, 2868
BstSFI	CTRYAG	3 cut(s)	816, 1684, 3228
BstSLI	GKGCMC	1 cut(s)	1338
BstV1I	GCAGC	7 cut(s)	339, 559, 755, 1182, 1204, 1375, 2672
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	3329
BstXI	CCANNNNNNTGG	2 cut(s)	614, 2713
BstYI	RGATCY	1 cut(s)	3329
BstZ17I	GTATAC	3 cut(s)	1512, 1551, 3220
Bsu15I	ATCGAT	1 cut(s)	2498
BsuRI	GGCC	6 cut(s)	522, 619, 1008, 1662, 1682, 2799
BsuTUI	ATCGAT	1 cut(s)	2498
BtsI	GCAGTG	2 cut(s)	1260, 3047
BtsIMutI	CAGTG	5 cut(s)	1260, 1815, 2174, 2748, 3047
BveI	ACCTGC	4 cut(s)	668, 689, 902, 1228
Cac8I	GCNNGC	7 cut(s)	741, 1175, 1222, 1669, 1727, 2545, 2889
CaiI	CAGNNNCTG	3 cut(s)	917, 947, 2843
CciI	TCATGA	3 cut(s)	1086, 1525, 2782
CfoI	GCGC	2 cut(s)	352, 663
Cfr10I	RCCGGY	2 cut(s)	1922, 1936
Cfr13I	GGNCC	9 cut(s)	520, 617, 728, 821, 1249, 1634, 1900, 2105, 2797
ClaI	ATCGAT	1 cut(s)	2498
CseI	GACGC	1 cut(s)	1929
Csp6I	GTAC	7 cut(s)	46, 121, 490, 1689, 1952, 2012, 2402
CviQI	GTAC	7 cut(s)	46, 121, 490, 1689, 1952, 2012, 2402
DdeI	CTNAG	9 cut(s)	186, 570, 735, 783, 1178, 1225, 2850, 2940, 3275
DpnI	GATC	8 cut(s)	8, 387, 937, 1413, 2081, 2771, 2945, 3331
DpnII	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
DraI	TTTAAA	2 cut(s)	540, 657
DraIII	CACNNNGTG	1 cut(s)	2528
DrdI	GACNNNNNNGTC	1 cut(s)	828
DseDI	GACNNNNNNGTC	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	1006
Eam1104I	CTCTTC	1 cut(s)	1758
EarI	CTCTTC	1 cut(s)	1758
Eco32I	GATATC	1 cut(s)	2637
Eco47I	GGWCC	6 cut(s)	728, 821, 1249, 1634, 1900, 2105
Eco47III	AGCGCT	2 cut(s)	351, 662
Eco57I	CTGAAG	3 cut(s)	278, 470, 536
Eco88I	CYCGRG	2 cut(s)	41, 3051
EcoNI	CCTNNNNNAGG	2 cut(s)	675, 696
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	3 cut(s)	1003, 1657, 2868
EcoRV	GATATC	1 cut(s)	2637
EcoT22I	ATGCAT	5 cut(s)	1258, 1329, 1448, 1669, 1673
Esp3I	CGTCTC	1 cut(s)	1947
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	2 cut(s)	1147, 2118
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	3 cut(s)	1511, 1550, 3219
Fnu4HI	GCNGC	8 cut(s)	353, 548, 744, 1171, 1218, 1389, 2661, 3237
Fsp4HI	GCNGC	8 cut(s)	353, 548, 744, 1171, 1218, 1389, 2661, 3237
FspBI	CTAG	6 cut(s)	1331, 2801, 2981, 3201, 3366, 3372
GlaI	GCGC	2 cut(s)	351, 662
GluI	GCNGC	8 cut(s)	353, 548, 744, 1171, 1218, 1389, 2661, 3237
GsaI	CCCAGC	2 cut(s)	498, 893
GsuI	CTGGAG	4 cut(s)	1306, 1641, 2391, 3291
HaeII	RGCGCY	2 cut(s)	353, 664
HaeIII	GGCC	6 cut(s)	522, 619, 1008, 1662, 1682, 2799
HapII	CCGG	5 cut(s)	177, 1923, 1937, 2142, 3341
HgaI	GACGC	1 cut(s)	1929
HhaI	GCGC	2 cut(s)	352, 663
Hin1I	GRCGYC	1 cut(s)	1940
Hin6I	GCGC	2 cut(s)	350, 661
HinP1I	GCGC	2 cut(s)	350, 661
HincII	GTYRAC	2 cut(s)	2194, 2746
HindII	GTYRAC	2 cut(s)	2194, 2746
HindIII	AAGCTT	2 cut(s)	188, 482
HpaI	GTTAAC	1 cut(s)	2194
HpaII	CCGG	5 cut(s)	177, 1923, 1937, 2142, 3341
HphI	GGTGA	6 cut(s)	158, 1157, 1418, 1511, 1871, 2643
HpyCH4III	ACNGT	9 cut(s)	76, 312, 902, 1084, 1116, 1156, 1810, 2039, 2281
HpyCH4IV	ACGT	5 cut(s)	27, 83, 362, 1338, 2823
HpyF3I	CTNAG	9 cut(s)	186, 570, 735, 783, 1178, 1225, 2850, 2940, 3275
HpySE526I	ACGT	5 cut(s)	27, 83, 362, 1338, 2823
Hsp92I	GRCGYC	1 cut(s)	1940
HspAI	GCGC	2 cut(s)	350, 661
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	2194
Kzo9I	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
LmnI	GCTCC	7 cut(s)	668, 844, 1660, 2372, 2840, 2865, 3319
Lsp1109I	GCAGC	7 cut(s)	339, 559, 755, 1182, 1204, 1375, 2672
MaeI	CTAG	6 cut(s)	1331, 2801, 2981, 3201, 3366, 3372
MaeII	ACGT	5 cut(s)	27, 83, 362, 1338, 2823
MaeIII	GTNAC	8 cut(s)	136, 146, 643, 680, 811, 994, 1370, 1405
MalI	GATC	8 cut(s)	8, 387, 937, 1413, 2081, 2771, 2945, 3331
MboI	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
MfeI	CAATTG	2 cut(s)	825, 2064
MflI	RGATCY	1 cut(s)	3329
MhlI	GDGCHC	2 cut(s)	27, 1338
MlsI	TGGCCA	1 cut(s)	1008
MluNI	TGGCCA	1 cut(s)	1008
MlyI	GAGTC	6 cut(s)	104, 1297, 1745, 1904, 2383, 2576
MmeI	TCCRAC	4 cut(s)	66, 1887, 3006, 3152
Mox20I	TGGCCA	1 cut(s)	1008
Mph1103I	ATGCAT	5 cut(s)	1258, 1329, 1448, 1669, 1673
MroXI	GAANNNNTTC	3 cut(s)	218, 311, 1569
MscI	TGGCCA	1 cut(s)	1008
MslI	CAYNNNNRTG	5 cut(s)	612, 1091, 1676, 2711, 3088
Msp20I	TGGCCA	1 cut(s)	1008
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	5 cut(s)	177, 1923, 1937, 2142, 3341
MspR9I	CCNGG	5 cut(s)	178, 1005, 1659, 2142, 2870
MunI	CAATTG	2 cut(s)	825, 2064
Mva1269I	GAATGC	1 cut(s)	1762
MvaI	CCWGG	3 cut(s)	1005, 1659, 2870
NciI	CCSGG	2 cut(s)	178, 2142
NdeII	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
NlaIV	GGNNCC	6 cut(s)	1533, 1635, 2092, 2106, 2867, 3048
NmuCI	GTSAC	4 cut(s)	146, 680, 994, 1370
NsiI	ATGCAT	5 cut(s)	1258, 1329, 1448, 1669, 1673
NspI	RCATGY	5 cut(s)	926, 1224, 1397, 1671, 2670
NspV	TTCGAA	2 cut(s)	1518, 3159
PaeI	GCATGC	2 cut(s)	1224, 1671
PaeR7I	CTCGAG	2 cut(s)	41, 3051
PagI	TCATGA	3 cut(s)	1086, 1525, 2782
PaqCI	CACCTGC	1 cut(s)	902
PciI	ACATGT	3 cut(s)	922, 1393, 2666
PcsI	WCGNNNNNNNCGW	1 cut(s)	2209
PctI	GAATGC	1 cut(s)	1762
PdmI	GAANNNNTTC	3 cut(s)	218, 311, 1569
PfoI	TCCNGGA	1 cut(s)	2140
PkrI	GCNGC	8 cut(s)	354, 549, 745, 1172, 1219, 1390, 2662, 3238
PleI	GAGTC	6 cut(s)	103, 1296, 1744, 1904, 2383, 2575
PpsI	GAGTC	6 cut(s)	103, 1296, 1744, 1904, 2383, 2575
Ppu21I	YACGTR	1 cut(s)	1339
PscI	ACATGT	3 cut(s)	922, 1393, 2666
PsiI	TTATAA	3 cut(s)	339, 527, 1788
Psp1406I	AACGTT	1 cut(s)	2823
Psp6I	CCWGG	3 cut(s)	1003, 1657, 2868
PspFI	CCCAGC	2 cut(s)	494, 889
PspGI	CCWGG	3 cut(s)	1003, 1657, 2868
PspN4I	GGNNCC	6 cut(s)	1533, 1635, 2092, 2106, 2867, 3048
PspPI	GGNCC	9 cut(s)	520, 617, 728, 821, 1249, 1634, 1900, 2105, 2797
PspXI	VCTCGAGB	2 cut(s)	41, 3051
PstI	CTGCAG	2 cut(s)	820, 3232
PstNI	CAGNNNCTG	3 cut(s)	917, 947, 2843
PsuI	RGATCY	1 cut(s)	3329
RsaI	GTAC	7 cut(s)	47, 122, 491, 1690, 1953, 2013, 2403
RsaNI	GTAC	7 cut(s)	46, 121, 490, 1689, 1952, 2012, 2402
RseI	CAYNNNNRTG	5 cut(s)	612, 1091, 1676, 2711, 3088
SatI	GCNGC	8 cut(s)	353, 548, 744, 1171, 1218, 1389, 2661, 3237
Sau3AI	GATC	8 cut(s)	6, 385, 935, 1411, 2079, 2769, 2943, 3329
Sau96I	GGNCC	9 cut(s)	520, 617, 728, 821, 1249, 1634, 1900, 2105, 2797
ScaI	AGTACT	4 cut(s)	47, 122, 1690, 2013
SchI	GAGTC	6 cut(s)	104, 1297, 1745, 1904, 2383, 2576
ScrFI	CCNGG	5 cut(s)	178, 1005, 1659, 2142, 2870
SduI	GDGCHC	2 cut(s)	27, 1338
SfcI	CTRYAG	3 cut(s)	816, 1684, 3228
Sfr274I	CTCGAG	2 cut(s)	41, 3051
SfuI	TTCGAA	2 cut(s)	1518, 3159
SinI	GGWCC	6 cut(s)	728, 821, 1249, 1634, 1900, 2105
SlaI	CTCGAG	2 cut(s)	41, 3051
SmiMI	CAYNNNNRTG	5 cut(s)	612, 1091, 1676, 2711, 3088
SmlI	CTYRAG	8 cut(s)	13, 41, 248, 863, 2516, 3035, 3051, 3299
SmoI	CTYRAG	8 cut(s)	13, 41, 248, 863, 2516, 3035, 3051, 3299
SphI	GCATGC	2 cut(s)	1224, 1671
SsiI	CCGC	2 cut(s)	720, 3236
SspI	AATATT	1 cut(s)	1204
SspMI	CTAG	6 cut(s)	1331, 2801, 2981, 3201, 3366, 3372
StyD4I	CCNGG	5 cut(s)	176, 1003, 1657, 2140, 2868
TaaI	ACNGT	9 cut(s)	76, 312, 902, 1084, 1116, 1156, 1810, 2039, 2281
TaiI	ACGT	5 cut(s)	30, 86, 365, 1341, 2826
TaqI	TCGA	8 cut(s)	5, 42, 1518, 2203, 2498, 3052, 3159, 3345
TatI	WGTACW	4 cut(s)	45, 120, 1688, 2011
TauI	GCSGC	1 cut(s)	3239
TscAI	CASTG	5 cut(s)	1267, 1815, 2181, 2755, 3047
TseFI	GTSAC	4 cut(s)	146, 680, 994, 1370
TseI	GCWGC	7 cut(s)	352, 547, 743, 1170, 1217, 1388, 2660
Tsp45I	GTSAC	4 cut(s)	146, 680, 994, 1370
TspGWI	ACGGA	3 cut(s)	1563, 1983, 3332
TspRI	CASTG	5 cut(s)	1267, 1815, 2181, 2755, 3047
Vha464I	CTTAAG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	1334
VpaK11BI	GGWCC	6 cut(s)	728, 821, 1249, 1634, 1900, 2105
XagI	CCTNNNNNAGG	2 cut(s)	675, 696
XapI	RAATTY	4 cut(s)	370, 565, 2264, 2954
XceI	RCATGY	5 cut(s)	926, 1224, 1397, 1671, 2670
XhoI	CTCGAG	2 cut(s)	41, 3051
XmiI	GTMKAC	3 cut(s)	1511, 1550, 3219
XmnI	GAANNNNTTC	3 cut(s)	218, 311, 1569
XspI	CTAG	6 cut(s)	1331, 2801, 2981, 3201, 3366, 3372
ZrmI	AGTACT	4 cut(s)	47, 122, 1690, 2013
Zsp2I	ATGCAT	5 cut(s)	1258, 1329, 1448, 1669, 1673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.