Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001857

Physical Location & Seq

Genomic Coordinates Forward (+)

1562209 .. 1570940

Gene Structure 8732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3339 bp

ATGTCCTCGCTGAGCAGAGAGCTCGTGTTTCTCATACTTCAGTTTCTGGATGAAGAGAAATTCAAAGAGAGTGTTCATAAGTTGGAGCAAGAGTCAGGGTTTTTCTTTAATATGAGGTATTTTGAGGACATGGTGACGACTGGAGAGTGGGAGGAGGTGGAGAAGTATTTGTCTGGCTTCACCAAGGTGGATGATAATCGATACTCGATGAAGATCTTTTTCGAGATACGCAAGCAGAAGTATCTTGAAGCTTTGGACAAGAGGGACCGAGCAAAAGCTGTGGATATTTTAGTGAAGGACTTGAAGGTGTTTGCGGCATTCAATGAAGAGCTTTTTAAGGAAATCACGCAGCTACTGACTCTGGATAACTTTAGGGATAATGAACAGTTATCTAAGTATGGGGATACAAAGTCTGCAAGGGGTATAATGCTTGCTGAGCTGAAGAAGTTGATAGAGGCTAACCCATTGTTTCGCGACAAACTTCAGTTTCCTACCCTGAAGAACTCGAGATTGCGGACTCTTATCAATCAGAGCTTAAACTGGCAGCACCAGCTTTGTAAGAATCCAAGGCCTAATCCTGACATAAAGACCCTGTTTGTAGACCATAGCTGTGGACAACCGAATGGTGCCAGAGCTCCATCTCCAGTTACTAATCATTTGATGGGGGCAGTCCCAAAGACAGGGGCTTTCGCACCACTTGGTCCTCATGGGCCTTTTCAGCCCACACCTGCTGCGCTTCCAACATCTCTTGCTGGATGGATGGCCAACCCATCACCTGTGCCTCATCCCTCTGCTTCCGCCGGGCCTATTGGTTTGGCTGCAGCTAGCAATCCAGATTCTGAACATGTGCTGAAGAGATCAAGACCTTTTGGAGTATCAGATGAGGCAAACAATCTGCCAGTAACTATTCTGCCGGGTGTTTATGCTAACCAGAGCCATGGTCAGAGTTCATACTCTACTGATGACTTGCCCAGGAATGTAGTAATGACAATAAGTCCAGGTTCAGCTGTGAAGAGTATGGATTTCCACCCAGTGCAACAGATTCTACTACTTGTTGGAACAAATATCGGTGATGCCATGATATATGAGTTACCAAGCCATGAAAGAATTGCTATTAGGATCTTCAAAGCCTGGGACCTTGCGCAATGTTCAGCGGCTCTGCAGGCGACTTTGTCCAATGACTATACAGCATCGATTAACCGTGTGGTGTGGAGTCCTGATGGAACTCTTTTTGGTGTTGCATACTCTAAGCATTTAGTTCACATATACTCCTATCATGGTGGTGATGATTTAAGAAATCACCTAGAGATTGAGGCACATGCTGGGAGTGTTAATGATCTTGCCTTCTCATATCCAAACAAACAGCTCTGTGTTGTGACTTGTGGCGAGGATAGGGTTATTAAGGTTTGGGATGCTGTAACTGGGGCTAAGCAGCATACATTTGAGGGCCATGAAGCCCCTGTATACTCTGTTTGCCCGCATCACAAGGAGAGTATTCAGTTTATTTTCTCGACAGCAACTGATGGAAAAATAAAGGCATGGCTGTATGATAATATGGGCTCAAGAGTTGACTATGATGCACCAGGACATTCGTCTACCACTATGGCATACAGTGCTGATGGAACTAGGCTGTTCTCATGTGGGACAAATAAAGAAGGTGATTCATACTTGGTGGAATGGAATGAAAGTGAAGGAGCCGTAAAGCGTACCTACAATGGTCTTGGGAAGCGGACTATTGGGGTGGTGCAGTTTGATACCACCAAGAATCGATTCCTGGCTACTGGTGATGAATTCATGGTTAAATTCTGGGACATGGACAATGTTAACCTTTTGATTAGCACAGATGCAGATGGTGGACTGCCGGCTTCTCCTTCTATTAGATTTAACAAAGAAGGAATTTTGTTAGCTGTCTCAACAAATGACAACGGTATTAAAATTCTAGCAAATTCAGATGGAATGAGGTTGCTAAGAACAGTGGAGAGTCGTACATATGATGCTTCCAGAGCTGCCTCTGTGGCTGTCGTGAAGGCCCCAGCAATAGGAACATTTGGGTCGCCTAACATCACTGTTGGAACAAGCACTGGAGATCGAGCAGCTCCAGTGCCGGCCATGGTTGGACTGAACAATGACAGTCGAAGTTTGGCTGATGTGAAACCTAGAATTGTTGATGAGTCGGTAGAGAAATCCAGGATCTGGAAACTGACTGAAATCAATGAAGCATCACAATGCCGGTCTCTGAGGCTTCCTGATAATTTAACTGCAATGAGGGTTTCTAGGTTAATTTACACAAATTCAGGACTCGCCATATTGGCATTATCATCTAATGCTGTACACAAGCTTTGGAAATGGCAACGAAATGACCGAACTGCGATAGGGAAGGCCACAGCTAGTATTGTACCACAACTCTGGCAACCTGCAAGTGGTATACTGATGACTAATGATATAAGTGATACAAACCCTGAAGATGCTGTTCCATGCTTTGCCCTTTCAAAGAACGACTCTTACGTTATGTCAGCTTCAGGGGGGAAAATATCCCTGTTCAATATGATGACTTTTAAGACGATGACAACATTCATGCCTCCACCACCAGCTGCCACATATCTGGCATTTCATCCCCAAGACAATAATATCATCGCCATAGGCATGGAAGACTCTTCCATCCAAATTTACAATGTTCGGGTTGATGAGGTTAAAACTAAGCTAAAAGGTCATCAGAAAAGAATAACGGGCCTTGCCTTCTCACATGTTCTTAATGTGCTTGTATCCTCGGGAGCGGATTCTCAGTTGTGTGTCTGGAACACAGATGGATGGGAAAGGCAAGCTAGTAAATTCCTTCAGATTCCAAATGGGCGAGCTGCTGCCCCTCTTGCTGATACTCGGGTTCAGTTCCACTTGGATCAGATACACTTGCTCGCAGTTCATGAAACACAGATAGCCATTTACGAAGCACCAAAATTAGAATGCCTCAAGCAGTGGGTCCCTCGAGAAGCTAGTGGTCCAATCACACATGCTGCTTATTCCTGTGATAGCCAGTCAATTTATGTTAGCTTCGAAGATGGAAGTGTGGGGGTTCTCACTGCTACAAACCTTAGATTGAGATGCCGAATATTACCGGCTGCGTATTTACCTCCGAATCCAAGCTTAAGAGTGTATCCTCTTGTTGTCGCGGCACACCCATCAGATCCCAATCAGTTTGCACTAGGTCTTACAGATGGTGGTGTGCATGTGCTTGAGCCATTAGAATCAGAAGGAAAATGGGGCACCTCCCCTCCAACTGAAAATGGTGCTGGGCCTAGCACCACTTCTGGAGCAGCAGGTTCGGATCAACCTCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1113

Amino Acids

122.16

Weight (kDa)

6.39

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 34	1.6e-12	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	37 - 161	1e-63	TPR1-like, CTLH-containing domain
zf_topless	PF21359	164 - 204	9.9e-25	TOPLESS, zinc finger domain
Beta-prop_RIG_2nd	PF23775	341 - 490	2.2e-06	RIG second beta-propeller
Beta-prop_WDR3_1st	PF25173	376 - 552	8.1e-17	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	383 - 550	3.3e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	390 - 551	2.2e-10	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	395 - 607	2e-19	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	397 - 657	5.2e-24	THOC3 beta-propeller domain
WDR55	PF24796	397 - 514	6.4e-07	WDR55
WD40_WDHD1_1st	PF24817	410 - 517	6.6e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	455 - 646	7.2e-12	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	774 - 938	1.7e-13	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	817 - 1017	5.2e-16	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	818 - 1029	4.8e-10	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	818 - 940	2e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	819 - 935	1.1e-15	WDR3 first beta-propeller domain
WDR55	PF24796	820 - 934	9.1e-07	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	821 - 933	8.6e-09	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	821 - 1024	9.3e-15	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	822 - 1025	4.1e-16	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	825 - 942	1.5e-11	WDR3 second beta-propeller domain
Beta-prop_IFT140_1st	PF23383	837 - 943	1.4e-09	IFT140 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	838 - 934	7e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	842 - 936	9.1e-08	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15880 AT3G15880 AT3G15880 AT3G15880
fragaria_vesca	FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730
malus_domestica	MD02G1027700.v1.1 MD11G1043800.v1.1 MD15G1169300.v1.1
prunus_persica	Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1
pyrus_communis	pycom12419g00020
rosa_chinensis	RchiOBHm_Chr2g0087841
rosa_laevigata	RLG00000015906 RLG00000019456
rosa_multiflora	Rmu_sc0008385.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153180
rosa_rugosa	Rorug01G0479000 Rorug01G0479000 Rorug02G0324100 Rorug02G0324100
rosa_samantha	Rh2BG032700
rosa_wichuraiana	Rw2G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	736
Acc16I	TGCGCA	1 cut(s)	1143
Acc36I	ACCTGC	3 cut(s)	736, 2422, 3305
AccB1I	GGYRCC	2 cut(s)	626, 3260
AccB7I	CCANNNNNTGG	1 cut(s)	2193
AccBSI	CCGCTC	1 cut(s)	2774
AccI	GTMKAC	4 cut(s)	600, 1464, 1595, 2425
AccII	CGCG	2 cut(s)	474, 3167
AciI	CCGC	8 cut(s)	314, 514, 798, 1154, 1478, 1729, 2774, 3167
AclWI	GGATC	5 cut(s)	1127, 2198, 2904, 3176, 3330
AcoI	YGGCCR	2 cut(s)	762, 2106
AcsI	RAATTY	9 cut(s)	59, 1790, 1802, 1896, 1935, 1945, 2290, 2664, 2828
AcuI	CTGAAG	8 cut(s)	23, 461, 467, 518, 872, 2481, 2502, 2819
AdeI	CACNNNGTG	1 cut(s)	1033
AfaI	GTAC	4 cut(s)	1708, 1987, 2331, 2397
AfiI	CCNNNNNNNGG	4 cut(s)	680, 2039, 2193, 2420
AflII	CTTAAG	1 cut(s)	3142
AflIII	ACRYGT	2 cut(s)	844, 2743
AgsI	TTSAA	7 cut(s)	64, 248, 304, 322, 1126, 2490, 2542
AhdI	GACNNNNNGTC	1 cut(s)	993
AjnI	CCWGG	6 cut(s)	971, 997, 1130, 1582, 1773, 2186
AjuI	GAANNNNNNNTTGG	2 cut(s)	1754, 1786
AleI	CACNNNNGTG	1 cut(s)	185
Alw21I	GWGCWC	2 cut(s)	24, 637
Alw26I	GTCTC	2 cut(s)	1915, 2238
AlwI	GGATC	5 cut(s)	1127, 2198, 2904, 3176, 3330
AlwNI	CAGNNNCTG	5 cut(s)	46, 355, 839, 1520, 2193
Ama87I	CYCGRG	4 cut(s)	505, 2767, 2877, 2982
ApoI	RAATTY	9 cut(s)	59, 1790, 1802, 1896, 1935, 1945, 2290, 2664, 2828
Asp700I	GAANNNNTTC	1 cut(s)	1769
AspLEI	GCGC	2 cut(s)	736, 1144
AsuC2I	CCSGG	2 cut(s)	802, 915
AsuHPI	GGTGA	8 cut(s)	145, 172, 765, 1082, 1292, 1295, 1670, 1796
AsuII	TTCGAA	1 cut(s)	3051
AsuNHI	GCTAGC	1 cut(s)	824
AvaI	CYCGRG	4 cut(s)	505, 2767, 2877, 2982
AvaII	GGWCC	5 cut(s)	265, 701, 1135, 2977, 2996
BaeGI	GKGCMC	1 cut(s)	3263
BaeI	ACNNNNGTAYC	2 cut(s)	2865, 2898
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	2 cut(s)	626, 3260
BanII	GRGCYC	3 cut(s)	24, 637, 1562
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	2655
Bbv12I	GWGCWC	2 cut(s)	24, 637
BceAI	ACGGC	1 cut(s)	1682
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 3300, 3334
BciT130I	CCWGG	6 cut(s)	973, 999, 1132, 1584, 1775, 2188
BciVI	GTATCC	3 cut(s)	397, 2773, 3162
BcnI	CCSGG	2 cut(s)	802, 915
BcoDI	GTCTC	2 cut(s)	1915, 2238
BfmI	CTRYAG	2 cut(s)	819, 1160
BfrI	CTTAAG	1 cut(s)	3142
BfuAI	ACCTGC	3 cut(s)	736, 2422, 3305
BfuI	GTATCC	3 cut(s)	397, 2773, 3162
BglI	GCCNNNNNGGC	2 cut(s)	2015, 2309
BglII	AGATCT	1 cut(s)	213
BlpI	GCTNAGC	3 cut(s)	11, 435, 1428
Bme1390I	CCNGG	8 cut(s)	802, 915, 973, 999, 1132, 1584, 1775, 2188
Bme18I	GGWCC	5 cut(s)	265, 701, 1135, 2977, 2996
BmeRI	GACNNNNNGTC	1 cut(s)	993
BmeT110I	CYCGRG	4 cut(s)	505, 2767, 2877, 2982
BmiI	GGNNCC	8 cut(s)	266, 628, 1136, 1696, 2031, 2978, 2979, 3262
BmrFI	CCNGG	8 cut(s)	802, 915, 973, 999, 1132, 1584, 1775, 2188
BmrI	ACTGGG	2 cut(s)	1025, 1431
BmtI	GCTAGC	1 cut(s)	828
BmuI	ACTGGG	2 cut(s)	1025, 1431
BoxI	GACNNNNGTC	1 cut(s)	1591
BpiI	GAAGAC	1 cut(s)	2655
BpmI	CTGGAG	5 cut(s)	162, 627, 2082, 2103, 3327
Bpu1102I	GCTNAGC	3 cut(s)	11, 435, 1428
Bpu14I	TTCGAA	1 cut(s)	3051
BpuEI	CTTGAG	3 cut(s)	1546, 2951, 3251
BpuMI	CCSGG	2 cut(s)	802, 915
Bsa29I	ATCGAT	3 cut(s)	199, 1193, 1768
BsaBI	GATNNNNATC	3 cut(s)	195, 212, 3186
BsaI	GGTCTC	1 cut(s)	2238
BsaJI	CCNNGG	7 cut(s)	183, 566, 937, 971, 1131, 2109, 2766
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 1253, 1283, 3253, 3283
Bsc4I	CCNNNNNNNGG	4 cut(s)	680, 2039, 2193, 2420
Bse118I	RCCGGY	4 cut(s)	1861, 2104, 2229, 3112
Bse3DI	GCAATG	2 cut(s)	1151, 2268
Bse8I	GATNNNNATC	3 cut(s)	195, 212, 3186
BseBI	CCWGG	6 cut(s)	973, 999, 1132, 1584, 1775, 2188
BseCI	ATCGAT	3 cut(s)	199, 1193, 1768
BseDI	CCNNGG	7 cut(s)	183, 566, 937, 971, 1131, 2109, 2766
BseGI	GGATG	9 cut(s)	55, 196, 761, 765, 784, 1417, 2611, 2658, 2813
BseJI	GATNNNNATC	3 cut(s)	195, 212, 3186
BseLI	CCNNNNNNNGG	4 cut(s)	680, 2039, 2193, 2420
BseMI	GCAATG	2 cut(s)	1151, 2268
BseMII	CTCAG	3 cut(s)	426, 2228, 2795
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	3263
BseYI	CCCAGC	3 cut(s)	1322, 2032, 3287
BsgI	GTGCAG	1 cut(s)	1766
Bsh1236I	CGCG	2 cut(s)	474, 3167
BshNI	GGYRCC	2 cut(s)	626, 3260
BshVI	ATCGAT	3 cut(s)	199, 1193, 1768
BsiHKAI	GWGCWC	2 cut(s)	24, 637
BsiHKCI	CYCGRG	4 cut(s)	505, 2767, 2877, 2982
BsiSI	CCGG	6 cut(s)	801, 914, 1862, 2105, 2230, 3113
BslFI	GGGAC	6 cut(s)	278, 656, 1148, 1657, 1823, 2963
BslI	CCNNNNNNNGG	4 cut(s)	680, 2039, 2193, 2420
BsmAI	GTCTC	2 cut(s)	1915, 2238
BsmFI	GGGAC	6 cut(s)	278, 656, 1148, 1657, 1823, 2963
BsmI	GAATGC	2 cut(s)	317, 2966
Bso31I	GGTCTC	1 cut(s)	2238
BsoBI	CYCGRG	4 cut(s)	505, 2767, 2877, 2982
Bsp119I	TTCGAA	1 cut(s)	3051
Bsp1286I	GDGCHC	4 cut(s)	24, 637, 1562, 3263
Bsp1407I	TGTACA	1 cut(s)	2329
Bsp143I	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
Bsp1720I	GCTNAGC	3 cut(s)	11, 435, 1428
Bsp19I	CCATGG	2 cut(s)	937, 2109
Bsp68I	TCGCGA	1 cut(s)	474
BspACI	CCGC	8 cut(s)	314, 514, 798, 1154, 1478, 1729, 2774, 3167
BspCNI	CTCAG	3 cut(s)	427, 2229, 2794
BspDI	ATCGAT	3 cut(s)	199, 1193, 1768
BspFNI	CGCG	2 cut(s)	474, 3167
BspHI	TCATGA	1 cut(s)	2920
BspLI	GGNNCC	8 cut(s)	266, 628, 1136, 1696, 2031, 2978, 2979, 3262
BspMAI	CTGCAG	2 cut(s)	823, 1164
BspMI	ACCTGC	3 cut(s)	736, 2422, 3305
BspOI	GCTAGC	1 cut(s)	828
BspPI	GGATC	5 cut(s)	1127, 2198, 2904, 3176, 3330
BspQI	GCTCTTC	1 cut(s)	321
BspT104I	TTCGAA	1 cut(s)	3051
BspT107I	GGYRCC	2 cut(s)	626, 3260
BspTI	CTTAAG	1 cut(s)	3142
BspTNI	GGTCTC	1 cut(s)	2238
BsrBI	CCGCTC	1 cut(s)	2774
BsrDI	GCAATG	2 cut(s)	1151, 2268
BsrFI	RCCGGY	4 cut(s)	1861, 2104, 2229, 3112
BsrGI	TGTACA	1 cut(s)	2329
BssAI	RCCGGY	4 cut(s)	1861, 2104, 2229, 3112
BssECI	CCNNGG	7 cut(s)	183, 566, 937, 971, 1131, 2109, 2766
BssMI	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
BssNAI	GTATAC	2 cut(s)	1465, 2426
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	4 cut(s)	183, 566, 937, 2109
Bst1107I	GTATAC	2 cut(s)	1465, 2426
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	6 cut(s)	973, 999, 1132, 1584, 1775, 2188
Bst4CI	ACNGT	7 cut(s)	387, 1202, 1613, 1928, 1975, 2068, 2132
Bst6I	CTCTTC	5 cut(s)	48, 321, 848, 1007, 2659
BstAFI	CTTAAG	1 cut(s)	3142
BstAPI	GCANNNNNTGC	1 cut(s)	1613
BstAUI	TGTACA	1 cut(s)	2329
BstBI	TTCGAA	1 cut(s)	3051
BstDSI	CCRYGG	2 cut(s)	937, 2109
BstF5I	GGATG	9 cut(s)	55, 196, 761, 765, 784, 1417, 2611, 2658, 2813
BstFNI	CGCG	2 cut(s)	474, 3167
BstHHI	GCGC	2 cut(s)	736, 1144
BstKTI	GATC	9 cut(s)	216, 860, 1122, 1339, 2089, 2193, 2899, 3184, 3325
BstMAI	GTCTC	2 cut(s)	1915, 2238
BstMBI	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
BstMWI	GCNNNNNNNGC	9 cut(s)	436, 550, 718, 1163, 1613, 2003, 2015, 2309, 2867
BstNI	CCWGG	6 cut(s)	973, 999, 1132, 1584, 1775, 2188
BstNSI	RCATGY	5 cut(s)	848, 1322, 2747, 3011, 3227
BstPAI	GACNNNNGTC	1 cut(s)	1591
BstSCI	CCNGG	8 cut(s)	800, 913, 971, 997, 1130, 1582, 1773, 2186
BstSFI	CTRYAG	2 cut(s)	819, 1160
BstSLI	GKGCMC	1 cut(s)	3263
BstUI	CGCG	2 cut(s)	474, 3167
BstV2I	GAAGAC	1 cut(s)	2655
BstX2I	RGATCY	4 cut(s)	213, 1119, 2190, 3181
BstXI	CCANNNNNNTGG	5 cut(s)	611, 938, 2406, 2602, 2644
BstYI	RGATCY	4 cut(s)	213, 1119, 2190, 3181
BstZ17I	GTATAC	2 cut(s)	1465, 2426
Bsu15I	ATCGAT	3 cut(s)	199, 1193, 1768
BsuI	GTATCC	3 cut(s)	397, 2773, 3162
BsuTUI	ATCGAT	3 cut(s)	199, 1193, 1768
BtgI	CCRYGG	2 cut(s)	937, 2109
BtgZI	GCGATG	1 cut(s)	2617
BtsCI	GGATG	9 cut(s)	55, 196, 761, 765, 784, 1417, 2611, 2658, 2813
BtsI	GCAGTG	2 cut(s)	2978, 3075
BtsIMutI	CAGTG	8 cut(s)	1038, 1618, 1980, 2064, 2079, 2106, 2978, 3075
BtuMI	TCGCGA	1 cut(s)	474
BveI	ACCTGC	3 cut(s)	736, 2422, 3305
CaiI	CAGNNNCTG	5 cut(s)	46, 355, 839, 1520, 2193
CciI	TCATGA	1 cut(s)	2920
CfoI	GCGC	2 cut(s)	736, 1144
Cfr10I	RCCGGY	4 cut(s)	1861, 2104, 2229, 3112
ClaI	ATCGAT	3 cut(s)	199, 1193, 1768
Csp6I	GTAC	4 cut(s)	1707, 1986, 2330, 2396
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviQI	GTAC	4 cut(s)	1707, 1986, 2330, 2396
DpnI	GATC	9 cut(s)	215, 859, 1121, 1338, 2088, 2192, 2898, 3183, 3324
DpnII	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
DraIII	CACNNNGTG	1 cut(s)	1033
DriI	GACNNNNNGTC	1 cut(s)	993
EaeI	YGGCCR	2 cut(s)	762, 2106
Eam1104I	CTCTTC	5 cut(s)	48, 321, 848, 1007, 2659
Eam1105I	GACNNNNNGTC	1 cut(s)	993
EarI	CTCTTC	5 cut(s)	48, 321, 848, 1007, 2659
EciI	GGCGGA	1 cut(s)	787
Ecl136II	GAGCTC	2 cut(s)	22, 635
Eco130I	CCWWGG	4 cut(s)	183, 566, 937, 2109
Eco147I	AGGCCT	1 cut(s)	571
Eco24I	GRGCYC	3 cut(s)	24, 637, 1562
Eco31I	GGTCTC	1 cut(s)	2238
Eco47I	GGWCC	5 cut(s)	265, 701, 1135, 2977, 2996
Eco53kI	GAGCTC	2 cut(s)	22, 635
Eco57I	CTGAAG	8 cut(s)	23, 461, 467, 518, 872, 2481, 2502, 2819
Eco88I	CYCGRG	4 cut(s)	505, 2767, 2877, 2982
EcoICRI	GAGCTC	2 cut(s)	22, 635
EcoO109I	RGGNCCY	3 cut(s)	1135, 2029, 2977
EcoRI	GAATTC	1 cut(s)	1790
EcoRII	CCWGG	6 cut(s)	971, 997, 1130, 1582, 1773, 2186
EcoT14I	CCWWGG	4 cut(s)	183, 566, 937, 2109
EcoT38I	GRGCYC	3 cut(s)	24, 637, 1562
ErhI	CCWWGG	4 cut(s)	183, 566, 937, 2109
FaqI	GGGAC	6 cut(s)	278, 656, 1148, 1657, 1823, 2963
FauI	CCCGC	1 cut(s)	1485
FauNDI	CATATG	1 cut(s)	1990
FblI	GTMKAC	4 cut(s)	600, 1464, 1595, 2425
FokI	GGATG	9 cut(s)	62, 203, 768, 771, 772, 1424, 2598, 2645, 2820
FriOI	GRGCYC	3 cut(s)	24, 637, 1562
FspI	TGCGCA	1 cut(s)	1143
GlaI	GCGC	2 cut(s)	735, 1143
GsaI	CCCAGC	3 cut(s)	1326, 2036, 3291
GsuI	CTGGAG	5 cut(s)	162, 627, 2082, 2103, 3327
HapII	CCGG	6 cut(s)	801, 914, 1862, 2105, 2230, 3113
HhaI	GCGC	2 cut(s)	736, 1144
Hin6I	GCGC	2 cut(s)	734, 1142
HinP1I	GCGC	2 cut(s)	734, 1142
HincII	GTYRAC	2 cut(s)	1570, 1825
HindII	GTYRAC	2 cut(s)	1570, 1825
HindIII	AAGCTT	3 cut(s)	249, 2336, 3139
HpaI	GTTAAC	1 cut(s)	1825
HpaII	CCGG	6 cut(s)	801, 914, 1862, 2105, 2230, 3113
HphI	GGTGA	8 cut(s)	145, 172, 765, 1082, 1292, 1295, 1670, 1796
HpyCH4III	ACNGT	7 cut(s)	387, 1202, 1613, 1928, 1975, 2068, 2132
HpyCH4IV	ACGT	1 cut(s)	2505
HpyF10VI	GCNNNNNNNGC	9 cut(s)	436, 550, 718, 1163, 1613, 2003, 2015, 2309, 2867
HpySE526I	ACGT	1 cut(s)	2505
HspAI	GCGC	2 cut(s)	734, 1142
KflI	GGGWCCC	1 cut(s)	2977
KroI	GCCGGC	2 cut(s)	1861, 2104
KroNI	GCCGGC	2 cut(s)	1863, 2106
KspAI	GTTAAC	1 cut(s)	1825
Kzo9I	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	6 cut(s)	85, 640, 1694, 2101, 2771, 3308
MaeII	ACGT	1 cut(s)	2505
MaeIII	GTNAC	6 cut(s)	133, 646, 901, 1089, 1375, 1417
MalI	GATC	9 cut(s)	215, 859, 1121, 1338, 2088, 2192, 2898, 3183, 3324
MbiI	CCGCTC	1 cut(s)	2774
MboI	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
MflI	RGATCY	4 cut(s)	213, 1119, 2190, 3181
MhlI	GDGCHC	4 cut(s)	24, 637, 1562, 3263
MlsI	TGGCCA	1 cut(s)	764
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	9 cut(s)	101, 352, 511, 1222, 1990, 2180, 2292, 2492, 2645
MmeI	TCCRAC	6 cut(s)	63, 764, 1036, 2050, 2095, 3296
Mox20I	TGGCCA	1 cut(s)	764
MroNI	GCCGGC	2 cut(s)	1861, 2104
MroXI	GAANNNNTTC	1 cut(s)	1769
MscI	TGGCCA	1 cut(s)	764
MslI	CAYNNNNRTG	5 cut(s)	185, 609, 1281, 2224, 2642
Msp20I	TGGCCA	1 cut(s)	764
MspA1I	CMGCKG	3 cut(s)	1007, 1154, 2591
MspCI	CTTAAG	1 cut(s)	3142
MspI	CCGG	6 cut(s)	801, 914, 1862, 2105, 2230, 3113
MspR9I	CCNGG	8 cut(s)	802, 915, 973, 999, 1132, 1584, 1775, 2188
Mva1269I	GAATGC	2 cut(s)	317, 2966
MvaI	CCWGG	6 cut(s)	973, 999, 1132, 1584, 1775, 2188
MvnI	CGCG	2 cut(s)	474, 3167
MwoI	GCNNNNNNNGC	9 cut(s)	436, 550, 718, 1163, 1613, 2003, 2015, 2309, 2867
NaeI	GCCGGC	2 cut(s)	1863, 2106
NciI	CCSGG	2 cut(s)	802, 915
NcoI	CCATGG	2 cut(s)	937, 2109
NdeI	CATATG	1 cut(s)	1990
NdeII	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
NgoMIV	GCCGGC	2 cut(s)	1861, 2104
NheI	GCTAGC	1 cut(s)	824
NlaIV	GGNNCC	8 cut(s)	266, 628, 1136, 1696, 2031, 2978, 2979, 3262
NmuCI	GTSAC	2 cut(s)	133, 1375
NruI	TCGCGA	1 cut(s)	474
NsbI	TGCGCA	1 cut(s)	1143
NspI	RCATGY	5 cut(s)	848, 1322, 2747, 3011, 3227
NspV	TTCGAA	1 cut(s)	3051
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	2 cut(s)	505, 2982
PagI	TCATGA	1 cut(s)	2920
PaqCI	CACCTGC	1 cut(s)	736
PceI	AGGCCT	1 cut(s)	571
PciI	ACATGT	2 cut(s)	844, 2743
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	2 cut(s)	2359, 2502
PctI	GAATGC	2 cut(s)	317, 2966
PdiI	GCCGGC	2 cut(s)	1863, 2106
PdmI	GAANNNNTTC	1 cut(s)	1769
PflFI	GACNNNGTC	1 cut(s)	1171
PflMI	CCANNNNNTGG	1 cut(s)	2193
PfoI	TCCNGGA	1 cut(s)	2186
PleI	GAGTC	9 cut(s)	100, 352, 511, 1221, 1989, 2179, 2292, 2492, 2645
PpsI	GAGTC	9 cut(s)	100, 352, 511, 1221, 1989, 2179, 2292, 2492, 2645
PpuMI	RGGWCCY	2 cut(s)	1135, 2977
PscI	ACATGT	2 cut(s)	844, 2743
PshAI	GACNNNNGTC	1 cut(s)	1591
Psp124BI	GAGCTC	2 cut(s)	24, 637
Psp5II	RGGWCCY	2 cut(s)	1135, 2977
Psp6I	CCWGG	6 cut(s)	971, 997, 1130, 1582, 1773, 2186
PspFI	CCCAGC	3 cut(s)	1322, 2032, 3287
PspGI	CCWGG	6 cut(s)	971, 997, 1130, 1582, 1773, 2186
PspN4I	GGNNCC	8 cut(s)	266, 628, 1136, 1696, 2031, 2978, 2979, 3262
PspPPI	RGGWCCY	2 cut(s)	1135, 2977
PsrI	GAACNNNNNNTAC	2 cut(s)	2486, 2518
PstI	CTGCAG	2 cut(s)	823, 1164
PstNI	CAGNNNCTG	5 cut(s)	46, 355, 839, 1520, 2193
PsuI	RGATCY	4 cut(s)	213, 1119, 2190, 3181
PsyI	GACNNNGTC	1 cut(s)	1171
PvuII	CAGCTG	2 cut(s)	1007, 2591
RruI	TCGCGA	1 cut(s)	474
RsaI	GTAC	4 cut(s)	1708, 1987, 2331, 2397
RsaNI	GTAC	4 cut(s)	1707, 1986, 2330, 2396
RseI	CAYNNNNRTG	5 cut(s)	185, 609, 1281, 2224, 2642
SacI	GAGCTC	2 cut(s)	24, 637
SapI	GCTCTTC	1 cut(s)	321
Sau3AI	GATC	9 cut(s)	213, 857, 1119, 1336, 2086, 2190, 2896, 3181, 3322
SchI	GAGTC	9 cut(s)	101, 352, 511, 1222, 1990, 2180, 2292, 2492, 2645
ScrFI	CCNGG	8 cut(s)	802, 915, 973, 999, 1132, 1584, 1775, 2188
SduI	GDGCHC	4 cut(s)	24, 637, 1562, 3263
SfcI	CTRYAG	2 cut(s)	819, 1160
Sfr274I	CTCGAG	2 cut(s)	505, 2982
SfuI	TTCGAA	1 cut(s)	3051
SinI	GGWCC	5 cut(s)	265, 701, 1135, 2977, 2996
SlaI	CTCGAG	2 cut(s)	505, 2982
SmiMI	CAYNNNNRTG	5 cut(s)	185, 609, 1281, 2224, 2642
SmlI	CTYRAG	6 cut(s)	505, 1561, 2966, 2982, 3142, 3230
SmoI	CTYRAG	6 cut(s)	505, 1561, 2966, 2982, 3142, 3230
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	8 cut(s)	314, 514, 798, 1154, 1478, 1729, 2774, 3167
SspI	AATATT	1 cut(s)	3108
SstI	GAGCTC	2 cut(s)	24, 637
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	8 cut(s)	800, 913, 971, 997, 1130, 1582, 1773, 2186
StyI	CCWWGG	4 cut(s)	183, 566, 937, 2109
TaaI	ACNGT	7 cut(s)	387, 1202, 1613, 1928, 1975, 2068, 2132
TaiI	ACGT	1 cut(s)	2508
TaqII	GACCGA	2 cut(s)	282, 2376
TatI	WGTACW	1 cut(s)	2329
TauI	GCSGC	3 cut(s)	317, 1157, 3170
TscAI	CASTG	8 cut(s)	1038, 1618, 1980, 2071, 2086, 2106, 2978, 3082
TseFI	GTSAC	2 cut(s)	133, 1375
Tsp45I	GTSAC	2 cut(s)	133, 1375
TspRI	CASTG	8 cut(s)	1038, 1618, 1980, 2071, 2086, 2106, 2978, 3082
Tth111I	GACNNNGTC	1 cut(s)	1171
Van91I	CCANNNNNTGG	1 cut(s)	2193
Vha464I	CTTAAG	1 cut(s)	3142
VpaK11BI	GGWCC	5 cut(s)	265, 701, 1135, 2977, 2996
XapI	RAATTY	9 cut(s)	59, 1790, 1802, 1896, 1935, 1945, 2290, 2664, 2828
XceI	RCATGY	5 cut(s)	848, 1322, 2747, 3011, 3227
XhoI	CTCGAG	2 cut(s)	505, 2982
XmiI	GTMKAC	4 cut(s)	600, 1464, 1595, 2425
XmnI	GAANNNNTTC	1 cut(s)	1769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.