Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012419

Orthogroup ID

OG0001857

Physical Location & Seq

Genomic Coordinates Reverse (-)

45416 .. 51839

Gene Structure 6424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12419g00020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGGTAGCATCTTTGCTAAAGCGCCCAAGGACTTCTCCTAATAACCCGGCAATGGACCATCAAACTGCAGATTCTGGACATGTGTCCAAGAGATCAAGAGCGTTGGGAACATCAGATGAGGTCAATAATAGGCCTCTTAACGTCTTTCCACACACATATCCTGGCCACATCCATGCCCACACCCCTTACTCTTCTGAGGACTTGCCAAAGACTGTTGTTGTCAATTTGACTCTAGGTTCAGCTGCCAAGAGCTTGGAATTTCATCCCCTGCAACACACTCTGCTTCTTGTTGGAACAAATATTGGTGACATATCGATTTGGGAAGTAGGCAGAAGGGAGAGGCTTGTTTCTCGGAATTTCAAAATTTGGGATCTTTCTGTGTGTTCAATGGCTTTACAGGTGTTAATACAAGTAGTTTTTGTTTCTTATTCCCCAACTTCTGTTTCAGGTATTGCACATTCGAAGCATGTAGTGCACATTTATTCCTATCATGGTGGTGATGATTTACGGAACCACCTAGAGATTGATGCTCATGCTGGTAATGTTAGTGATCTTGCTTTCACTCACCTAAACAAACAATTATGCATCATAAGTTGCGGAGAGGACAAGACTACTAAGGTCTGGGATGCTGTCACTGGCAATAAACTGTATAACTTTGAAGGTCATGAAGCACCAGTTTATTCTGTGTGTGCACACATAAAGGACAACGTTCAGTTCATCTTTGCAACAGCCATTGATGGGAAAATTAAGGCATGGCTGTATGATAACGTTGGTTGTAGAGTTGATTACCATGCTCCAGGCCATTCTTGCACAAGAATGGTGTATAGTACTGATGGTACAAGGCTCTTCTCGTGTGGGACTAATAAGGAAGGGGAATCATACGTTGTGGAATGGAATGAAAACGAGGGGACGGTAAAGCGAACATATAATGGGCTTGGGAAGCAAGCTCATGGCGTTGTGCAGTTTGACACGACGAAGAACCGATTCTTGGCTGCTGGTGATGAGTTCCAAATCAAATATTGGGACATGGACAATGTGAACCTTTTGAATGCCACTGATGCGGAGGGTGGATTACTGGCTTCTCCTTGTCTACGATTTAACAAGGAAGGAACTATGCTAGCTGTTTCAACAAGTGAGAATGGTGTTAAAGTACTTGCAAATGCCGACGGCATTCGAATTTTAAGTGCAATTGAGAATTGTGCAGTTGATGCCTCCCGGATGGCTTCAGGAACTGCAACGGAGGGACCCATAATTGGAACATCTGGTGGTTCCAGTTCTGCTCATGGAACAAACAACGCGGTTGCAGTTAGAAGTCTGAACGGAGATGGCCGGAGTTTTGCAAACATCAAAGTAAGGGTTGCTGAGGAGCTAGAGAAACCAAAAACTTGGAGGCTAACTGAAGTTAATGAACCGTCTCTTCTTCGCTTCATATGGCTGCCTGATAGCCTGTTGGTAAATAGAATTGTTCGGTTAGTATATACAAATTCAGGAGCATCTATGTTGGCATTGACGAATACTGGGGTACATAAACTTTGGAAATGGCAGAAGGATGAGAAGAATGTTTCGGGCAAAGCAACTACCACTGTGCCACCACTGTTATGGCAACCTGCCAGTGGTATAGTGATGACCAATCAAGTACCCGAGACAACTCTTGAAGATCCTATCCATTGCCTTGCTATTTCAAAGAATGATTCTTATGCACTATCGGCATCTGGAGGGAAGGTTTCGCTTTATAATATGATGAACTATAAGACGATGATTACCTTTATTGCCTCACCACCTGCAGCAACATTTCTTGCCTTCCATCCGCAGGACAACAACATTATTGCAGTGGGCATGGATGATTCTACAATTCAAATCTACAATGTCCGAATTGACGAGGTCAAGAACAAGCTCAAAGGTCATCAAAGGAGAGTTACTGGCCTAGCATTTTCCAATGTTCTAAATATTCTTGTATCAGCAGGAGCTGATTCTCAGGTATGCTTATACCACTACGATAGGAGGAACGTGCCTTACCTCTGCGTGCGCCTGTGTGCATGGAGCATTGACGGATGGAGAAACCAGGCTGCTAAGTTCTTGCAGATTCCAACTGGTCGCGTGCCTACACCTAATGCTCAGACCCGTGTTCAGTTTCACCAAGATCAGATACATGTGTTAGCTGCTCATGAAACTCAAATAGCCATATATGAAGCACCGAAGTTGGAGTGCCTTAAACAGTGGGTGCCACGAGAATCGATTGGTCCTCTCACAGATGCTACCTATTCATGTGATAGCCAGTCAATTTATGCAAGCTTTGAGGATGGAAGTGTATGCATTCTAACTGCCTCTACACTCCGAATCAGATGTCGGATAAGCACTCCTGCATATGTGATGTCTAGTCCCAGGCATGTAATATGGTTACCAGTGGTTTTATACGCACAAATACACTCGACGAAGGTCTACCCAGCTGTGGTTGCTGCTCATCCATCCGACCCTAATCAATTCGCACTTGGACTCACCAATGGGGGAGTTGTGGTGATGGAGCCACCGGAATCAGAGGGGATGTGGGGTACTATGCCTCCAGTTGAGAATGCAGGCCCTAATGCCAGCTCGGCGGTGGTTCGGATCAACAGCCAGGGGTTCGTTAGGGCTGACTTTGACGCCTTGCTACACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

886

Amino Acids

97.13

Weight (kDa)

7.2

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15880 AT3G15880 AT3G15880 AT3G15880
fragaria_vesca	FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730
malus_domestica	MD02G1027700.v1.1 MD11G1043800.v1.1 MD15G1169300.v1.1
prunus_persica	Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1
pyrus_communis	pycom12419g00020
rosa_chinensis	RchiOBHm_Chr2g0087841
rosa_laevigata	RLG00000015906 RLG00000019456
rosa_multiflora	Rmu_sc0008385.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153180
rosa_rugosa	Rorug01G0479000 Rorug01G0479000 Rorug02G0324100 Rorug02G0324100
rosa_samantha	Rh2BG032700
rosa_wichuraiana	Rw2G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1734
AarI	CACCTGC	1 cut(s)	1789
Acc36I	ACCTGC	2 cut(s)	1615, 1789
AccB1I	GGYRCC	1 cut(s)	2221
AccI	GTMKAC	2 cut(s)	1090, 2439
AccII	CGCG	2 cut(s)	1298, 2097
AciI	CCGC	5 cut(s)	597, 1061, 1298, 1808, 2594
AclI	AACGTT	2 cut(s)	708, 768
AclWI	GGATC	3 cut(s)	378, 1652, 2612
AcoI	YGGCCR	2 cut(s)	163, 1327
AcsI	RAATTY	5 cut(s)	257, 355, 363, 1176, 1483
AcuI	CTGAAG	2 cut(s)	1209, 1419
AcyI	GRCGYC	1 cut(s)	2640
AfaI	GTAC	6 cut(s)	829, 838, 1152, 1524, 1638, 2551
AfiI	CCNNNNNNNGG	7 cut(s)	52, 738, 988, 1253, 1613, 1810, 2449
AflIII	ACRYGT	2 cut(s)	79, 2149
AgsI	TTSAA	8 cut(s)	361, 387, 659, 1048, 1128, 1655, 1683, 1856
AjnI	CCWGG	5 cut(s)	160, 796, 2061, 2381, 2613
AjuI	GAANNNNNNNTTGG	4 cut(s)	427, 459, 971, 1003
Alw21I	GWGCWC	2 cut(s)	477, 694
Alw26I	GTCTC	2 cut(s)	1419, 1637
Alw44I	GTGCAC	2 cut(s)	473, 690
AlwI	GGATC	3 cut(s)	378, 1652, 2612
AlwNI	CAGNNNCTG	3 cut(s)	74, 1232, 1967
Ama87I	CYCGRG	1 cut(s)	1640
AoxI	GGCC	6 cut(s)	131, 163, 799, 1327, 1921, 2575
ApaLI	GTGCAC	2 cut(s)	473, 690
ApeKI	GCWGC	7 cut(s)	242, 992, 1435, 1784, 2066, 2159, 2456
ApoI	RAATTY	5 cut(s)	257, 355, 363, 1176, 1483
ArsI	GACNNNNNNTTYG	2 cut(s)	2329, 2361
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	2 cut(s)	24, 2028
AspS9I	GGNCC	4 cut(s)	55, 1244, 2240, 2576
AsuC2I	CCSGG	2 cut(s)	47, 1216
AsuHPI	GGTGA	8 cut(s)	317, 509, 557, 1010, 1767, 2126, 2488, 2527
AsuII	TTCGAA	2 cut(s)	461, 1174
AsuNHI	GCTAGC	1 cut(s)	1117
AvaI	CYCGRG	1 cut(s)	1640
AvaII	GGWCC	3 cut(s)	55, 1244, 2240
BaeGI	GKGCMC	2 cut(s)	477, 694
BaeI	ACNNNNGTAYC	2 cut(s)	2138, 2171
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	2221
BauI	CACGAG	2 cut(s)	850, 2226
Bbv12I	GWGCWC	2 cut(s)	477, 694
BbvCI	CCTCAGC	1 cut(s)	1362
BbvI	GCAGC	7 cut(s)	229, 979, 1422, 1796, 2053, 2146, 2443
BceAI	ACGGC	1 cut(s)	1183
BciT130I	CCWGG	5 cut(s)	162, 798, 2063, 2383, 2615
BcnI	CCSGG	2 cut(s)	47, 1216
BcoDI	GTCTC	2 cut(s)	1419, 1637
BfaI	CTAG	6 cut(s)	233, 518, 1118, 1370, 1925, 2376
BfmI	CTRYAG	2 cut(s)	66, 1782
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	2 cut(s)	1615, 1789
BglI	GCCNNNNNGGC	1 cut(s)	2591
BisI	GCNGC	7 cut(s)	243, 993, 1436, 1785, 2067, 2160, 2457
BlsI	GCNGC	7 cut(s)	244, 994, 1437, 1786, 2068, 2161, 2458
BmcAI	AGTACT	2 cut(s)	829, 1152
Bme1390I	CCNGG	7 cut(s)	47, 162, 798, 1216, 2063, 2383, 2615
Bme18I	GGWCC	3 cut(s)	55, 1244, 2240
BmeT110I	CYCGRG	1 cut(s)	1640
BmgT120I	GGNCC	4 cut(s)	55, 1244, 2240, 2576
BmiI	GGNNCC	6 cut(s)	512, 1245, 1246, 1270, 2223, 2523
BmrFI	CCNGG	7 cut(s)	47, 162, 798, 1216, 2063, 2383, 2615
BmrI	ACTGGG	1 cut(s)	1527
BmsI	GCATC	9 cut(s)	17, 517, 594, 616, 1048, 1198, 1502, 1718, 2242
BmtI	GCTAGC	1 cut(s)	1121
BmuI	ACTGGG	1 cut(s)	1527
BoxI	GACNNNNGTC	2 cut(s)	82, 2435
BpmI	CTGGAG	3 cut(s)	780, 1734, 2544
Bpu10I	CCTNAGC	1 cut(s)	1362
Bpu14I	TTCGAA	2 cut(s)	461, 1174
BpuMI	CCSGG	2 cut(s)	47, 1216
Bsa29I	ATCGAT	2 cut(s)	314, 2234
BsaHI	GRCGYC	1 cut(s)	2640
BsaJI	CCNNGG	3 cut(s)	26, 2381, 2614
BsaWI	WCCGGW	1 cut(s)	2527
BsaXI	ACNNNNNCTCC	6 cut(s)	1707, 1737, 2499, 2529, 2542, 2572
Bsc4I	CCNNNNNNNGG	7 cut(s)	52, 738, 988, 1253, 1613, 1810, 2449
Bse3DI	GCAATG	2 cut(s)	57, 1666
BseBI	CCWGG	5 cut(s)	162, 798, 2063, 2383, 2615
BseCI	ATCGAT	2 cut(s)	314, 2234
BseDI	CCNNGG	3 cut(s)	26, 2381, 2614
BseLI	CCNNNNNNNGG	7 cut(s)	52, 738, 988, 1253, 1613, 1810, 2449
BseMI	GCAATG	2 cut(s)	57, 1666
BseMII	CTCAG	4 cut(s)	186, 1353, 1988, 2129
BseRI	GAGGAG	1 cut(s)	1379
BseSI	GKGCMC	2 cut(s)	477, 694
BseXI	GCAGC	7 cut(s)	229, 979, 1422, 1796, 2053, 2146, 2443
BseYI	CCCAGC	1 cut(s)	2443
BsgI	GTGCAG	2 cut(s)	980, 1221
Bsh1236I	CGCG	2 cut(s)	1298, 2097
BshFI	GGCC	6 cut(s)	133, 165, 801, 1329, 1923, 2577
BshNI	GGYRCC	1 cut(s)	2221
BshVI	ATCGAT	2 cut(s)	314, 2234
BsiHKAI	GWGCWC	2 cut(s)	477, 694
BsiHKCI	CYCGRG	1 cut(s)	1640
BsiSI	CCGG	4 cut(s)	47, 1216, 1330, 2528
BslFI	GGGAC	5 cut(s)	871, 922, 1037, 1257, 2364
BslI	CCNNNNNNNGG	7 cut(s)	52, 738, 988, 1253, 1613, 1810, 2449
BsmAI	GTCTC	2 cut(s)	1419, 1637
BsmBI	CGTCTC	1 cut(s)	1419
BsmFI	GGGAC	5 cut(s)	871, 922, 1037, 1257, 2364
BsmI	GAATGC	4 cut(s)	1054, 1170, 2313, 2575
BsnI	GGCC	6 cut(s)	133, 165, 801, 1329, 1923, 2577
BsoBI	CYCGRG	1 cut(s)	1640
Bsp119I	TTCGAA	2 cut(s)	461, 1174
Bsp1286I	GDGCHC	2 cut(s)	477, 694
Bsp143I	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
BspACI	CCGC	5 cut(s)	597, 1061, 1298, 1808, 2594
BspANI	GGCC	6 cut(s)	133, 165, 801, 1329, 1923, 2577
BspCNI	CTCAG	4 cut(s)	187, 1354, 1987, 2128
BspDI	ATCGAT	2 cut(s)	314, 2234
BspFNI	CGCG	2 cut(s)	1298, 2097
BspHI	TCATGA	2 cut(s)	664, 2164
BspLI	GGNNCC	6 cut(s)	512, 1245, 1246, 1270, 2223, 2523
BspMAI	CTGCAG	2 cut(s)	70, 1786
BspMI	ACCTGC	2 cut(s)	1615, 1789
BspOI	GCTAGC	1 cut(s)	1121
BspPI	GGATC	3 cut(s)	378, 1652, 2612
BspQI	GCTCTTC	1 cut(s)	851
BspT104I	TTCGAA	2 cut(s)	461, 1174
BspT107I	GGYRCC	1 cut(s)	2221
BsrDI	GCAATG	2 cut(s)	57, 1666
BssECI	CCNNGG	3 cut(s)	26, 2381, 2614
BssMI	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
BssNI	GRCGYC	1 cut(s)	2640
BssSI	CACGAG	2 cut(s)	850, 2226
BssT1I	CCWWGG	1 cut(s)	26
Bst2BI	CACGAG	2 cut(s)	850, 2226
Bst2UI	CCWGG	5 cut(s)	162, 798, 2063, 2383, 2615
Bst4CI	ACNGT	7 cut(s)	214, 648, 913, 1413, 1585, 1596, 2217
Bst6I	CTCTTC	3 cut(s)	196, 851, 1422
BstACI	GRCGYC	1 cut(s)	2640
BstAPI	GCANNNNNTGC	2 cut(s)	472, 1208
BstBI	TTCGAA	2 cut(s)	461, 1174
BstC8I	GCNNGC	7 cut(s)	945, 1119, 2024, 2099, 2290, 2575, 2587
BstDEI	CTNAG	6 cut(s)	195, 615, 1362, 1974, 2070, 2115
BstEII	GGTNACC	1 cut(s)	2397
BstFNI	CGCG	2 cut(s)	1298, 2097
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 2028
BstKTI	GATC	6 cut(s)	95, 373, 553, 1660, 2143, 2607
BstMAI	GTCTC	2 cut(s)	1419, 1637
BstMBI	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
BstMWI	GCNNNNNNNGC	8 cut(s)	472, 807, 940, 1058, 1208, 1706, 2453, 2591
BstNI	CCWGG	5 cut(s)	162, 798, 2063, 2383, 2615
BstNSI	RCATGY	4 cut(s)	83, 470, 2153, 2390
BstPAI	GACNNNNGTC	2 cut(s)	82, 2435
BstPI	GGTNACC	1 cut(s)	2397
BstSCI	CCNGG	7 cut(s)	45, 160, 796, 1214, 2061, 2381, 2613
BstSFI	CTRYAG	2 cut(s)	66, 1782
BstSLI	GKGCMC	2 cut(s)	477, 694
BstUI	CGCG	2 cut(s)	1298, 2097
BstV1I	GCAGC	7 cut(s)	229, 979, 1422, 1796, 2053, 2146, 2443
BstX2I	RGATCY	2 cut(s)	370, 1657
BstXI	CCANNNNNNTGG	3 cut(s)	253, 1386, 1599
BstYI	RGATCY	2 cut(s)	370, 1657
Bsu15I	ATCGAT	2 cut(s)	314, 2234
BsuRI	GGCC	6 cut(s)	133, 165, 801, 1329, 1923, 2577
BsuTUI	ATCGAT	2 cut(s)	314, 2234
BtsI	GCAGTG	1 cut(s)	1836
BtsIMutI	CAGTG	8 cut(s)	633, 1053, 1581, 1592, 1618, 1836, 2222, 2409
BveI	ACCTGC	2 cut(s)	1615, 1789
Cac8I	GCNNGC	7 cut(s)	945, 1119, 2024, 2099, 2290, 2575, 2587
CaiI	CAGNNNCTG	3 cut(s)	74, 1232, 1967
CciI	TCATGA	2 cut(s)	664, 2164
CfoI	GCGC	2 cut(s)	24, 2028
Cfr13I	GGNCC	4 cut(s)	55, 1244, 2240, 2576
ClaI	ATCGAT	2 cut(s)	314, 2234
CseI	GACGC	1 cut(s)	2648
Csp6I	GTAC	6 cut(s)	828, 837, 1151, 1523, 1637, 2550
CviQI	GTAC	6 cut(s)	828, 837, 1151, 1523, 1637, 2550
DdeI	CTNAG	6 cut(s)	195, 615, 1362, 1974, 2070, 2115
DpnI	GATC	6 cut(s)	94, 372, 552, 1659, 2142, 2606
DpnII	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
EaeI	YGGCCR	2 cut(s)	163, 1327
Eam1104I	CTCTTC	3 cut(s)	196, 851, 1422
EarI	CTCTTC	3 cut(s)	196, 851, 1422
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	133
Eco47I	GGWCC	3 cut(s)	55, 1244, 2240
Eco57I	CTGAAG	2 cut(s)	1209, 1419
Eco88I	CYCGRG	1 cut(s)	1640
Eco91I	GGTNACC	1 cut(s)	2397
EcoO109I	RGGNCCY	2 cut(s)	1244, 2576
EcoO65I	GGTNACC	1 cut(s)	2397
EcoRII	CCWGG	5 cut(s)	160, 796, 2061, 2381, 2613
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	2 cut(s)	587, 2315
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	1419
FaqI	GGGAC	5 cut(s)	871, 922, 1037, 1257, 2364
FauNDI	CATATG	2 cut(s)	1430, 2365
FblI	GTMKAC	2 cut(s)	1090, 2439
Fnu4HI	GCNGC	7 cut(s)	243, 993, 1436, 1785, 2067, 2160, 2457
Fsp4HI	GCNGC	7 cut(s)	243, 993, 1436, 1785, 2067, 2160, 2457
FspBI	CTAG	6 cut(s)	233, 518, 1118, 1370, 1925, 2376
GlaI	GCGC	2 cut(s)	23, 2027
GluI	GCNGC	7 cut(s)	243, 993, 1436, 1785, 2067, 2160, 2457
GsaI	CCCAGC	1 cut(s)	2447
GsuI	CTGGAG	3 cut(s)	780, 1734, 2544
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	6 cut(s)	133, 165, 801, 1329, 1923, 2577
HapII	CCGG	4 cut(s)	47, 1216, 1330, 2528
HgaI	GACGC	1 cut(s)	2648
HhaI	GCGC	2 cut(s)	24, 2028
Hin1I	GRCGYC	1 cut(s)	2640
Hin6I	GCGC	2 cut(s)	22, 2026
HinP1I	GCGC	2 cut(s)	22, 2026
HindIII	AAGCTT	1 cut(s)	2290
HpaII	CCGG	4 cut(s)	47, 1216, 1330, 2528
HphI	GGTGA	8 cut(s)	317, 509, 557, 1010, 1767, 2126, 2488, 2527
Hpy166II	GTNNAC	5 cut(s)	475, 692, 1039, 1091, 2440
Hpy188III	TCNNGA	9 cut(s)	75, 96, 665, 1227, 1488, 1652, 1713, 1885, 2165
Hpy8I	GTNNAC	5 cut(s)	475, 692, 1039, 1091, 2440
Hpy99I	CGWCG	3 cut(s)	976, 1169, 2434
HpyAV	CCTTC	8 cut(s)	327, 653, 863, 1100, 1540, 1714, 1810, 2428
HpyCH4III	ACNGT	7 cut(s)	214, 648, 913, 1413, 1585, 1596, 2217
HpyCH4IV	ACGT	5 cut(s)	141, 708, 768, 882, 2007
HpyF10VI	GCNNNNNNNGC	8 cut(s)	472, 807, 940, 1058, 1208, 1706, 2453, 2591
HpyF3I	CTNAG	6 cut(s)	195, 615, 1362, 1974, 2070, 2115
HpySE526I	ACGT	5 cut(s)	141, 708, 768, 882, 2007
Hsp92I	GRCGYC	1 cut(s)	2640
HspAI	GCGC	2 cut(s)	22, 2026
KflI	GGGWCCC	1 cut(s)	1244
Kzo9I	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
LguI	GCTCTTC	1 cut(s)	851
LmnI	GCTCC	6 cut(s)	799, 1366, 1490, 1964, 2040, 2521
Lsp1109I	GCAGC	7 cut(s)	229, 979, 1422, 1796, 2053, 2146, 2443
LweI	GCATC	9 cut(s)	17, 517, 594, 616, 1048, 1198, 1502, 1718, 2242
MaeI	CTAG	6 cut(s)	233, 518, 1118, 1370, 1925, 2376
MaeII	ACGT	5 cut(s)	141, 708, 768, 882, 2007
MaeIII	GTNAC	4 cut(s)	305, 631, 1915, 2397
MalI	GATC	6 cut(s)	94, 372, 552, 1659, 2142, 2606
MboI	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
MboII	GAAGA	7 cut(s)	183, 838, 988, 1409, 1412, 1567, 1667
MfeI	CAATTG	1 cut(s)	1188
MflI	RGATCY	2 cut(s)	370, 1657
MhlI	GDGCHC	2 cut(s)	477, 694
MlsI	TGGCCA	1 cut(s)	165
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	2 cut(s)	223, 2487
MmeI	TCCRAC	5 cut(s)	271, 2111, 2181, 2327, 2493
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	2 cut(s)	587, 2315
MroXI	GAANNNNTTC	1 cut(s)	983
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	8 cut(s)	138, 404, 747, 1098, 1146, 1181, 1404, 2211
MslI	CAYNNNNRTG	4 cut(s)	171, 495, 815, 1597
Msp20I	TGGCCA	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	242, 2447
MspI	CCGG	4 cut(s)	47, 1216, 1330, 2528
MspR9I	CCNGG	7 cut(s)	47, 162, 798, 1216, 2063, 2383, 2615
MunI	CAATTG	1 cut(s)	1188
Mva1269I	GAATGC	4 cut(s)	1054, 1170, 2313, 2575
MvaI	CCWGG	5 cut(s)	162, 798, 2063, 2383, 2615
MvnI	CGCG	2 cut(s)	1298, 2097
MwoI	GCNNNNNNNGC	8 cut(s)	472, 807, 940, 1058, 1208, 1706, 2453, 2591
NciI	CCSGG	2 cut(s)	47, 1216
NdeI	CATATG	2 cut(s)	1430, 2365
NdeII	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
NheI	GCTAGC	1 cut(s)	1117
NlaIV	GGNNCC	6 cut(s)	512, 1245, 1246, 1270, 2223, 2523
NmeAIII	GCCGAG	1 cut(s)	2570
NmuCI	GTSAC	2 cut(s)	305, 631
NsiI	ATGCAT	2 cut(s)	587, 2315
NspI	RCATGY	4 cut(s)	83, 470, 2153, 2390
NspV	TTCGAA	2 cut(s)	461, 1174
PagI	TCATGA	2 cut(s)	664, 2164
PaqCI	CACCTGC	1 cut(s)	1789
PceI	AGGCCT	1 cut(s)	133
PciI	ACATGT	2 cut(s)	79, 2149
PciSI	GCTCTTC	1 cut(s)	851
PctI	GAATGC	4 cut(s)	1054, 1170, 2313, 2575
PdmI	GAANNNNTTC	1 cut(s)	983
PflFI	GACNNNGTC	1 cut(s)	1880
PfoI	TCCNGGA	1 cut(s)	1214
PkrI	GCNGC	7 cut(s)	244, 994, 1437, 1786, 2068, 2161, 2458
PleI	GAGTC	2 cut(s)	223, 2487
PpsI	GAGTC	2 cut(s)	223, 2487
PpuMI	RGGWCCY	1 cut(s)	1244
PscI	ACATGT	2 cut(s)	79, 2149
PshAI	GACNNNNGTC	2 cut(s)	82, 2435
PsiI	TTATAA	1 cut(s)	1734
Psp1406I	AACGTT	2 cut(s)	708, 768
Psp5II	RGGWCCY	1 cut(s)	1244
Psp6I	CCWGG	5 cut(s)	160, 796, 2061, 2381, 2613
PspEI	GGTNACC	1 cut(s)	2397
PspFI	CCCAGC	1 cut(s)	2443
PspGI	CCWGG	5 cut(s)	160, 796, 2061, 2381, 2613
PspN4I	GGNNCC	6 cut(s)	512, 1245, 1246, 1270, 2223, 2523
PspPI	GGNCC	4 cut(s)	55, 1244, 2240, 2576
PspPPI	RGGWCCY	1 cut(s)	1244
PsrI	GAACNNNNNNTAC	2 cut(s)	1997, 2029
PstI	CTGCAG	2 cut(s)	70, 1786
PstNI	CAGNNNCTG	3 cut(s)	74, 1232, 1967
PsuI	RGATCY	2 cut(s)	370, 1657
PsyI	GACNNNGTC	1 cut(s)	1880
PvuII	CAGCTG	2 cut(s)	242, 2447
RsaI	GTAC	6 cut(s)	829, 838, 1152, 1524, 1638, 2551
RsaNI	GTAC	6 cut(s)	828, 837, 1151, 1523, 1637, 2550
RseI	CAYNNNNRTG	4 cut(s)	171, 495, 815, 1597
SapI	GCTCTTC	1 cut(s)	851
SaqAI	TTAA	8 cut(s)	138, 404, 747, 1098, 1146, 1181, 1404, 2211
SatI	GCNGC	7 cut(s)	243, 993, 1436, 1785, 2067, 2160, 2457
Sau3AI	GATC	6 cut(s)	92, 370, 550, 1657, 2140, 2604
Sau96I	GGNCC	4 cut(s)	55, 1244, 2240, 2576
ScaI	AGTACT	2 cut(s)	829, 1152
SchI	GAGTC	2 cut(s)	223, 2487
ScrFI	CCNGG	7 cut(s)	47, 162, 798, 1216, 2063, 2383, 2615
SduI	GDGCHC	2 cut(s)	477, 694
SfaNI	GCATC	9 cut(s)	17, 517, 594, 616, 1048, 1198, 1502, 1718, 2242
SfcI	CTRYAG	2 cut(s)	66, 1782
SfuI	TTCGAA	2 cut(s)	461, 1174
SinI	GGWCC	3 cut(s)	55, 1244, 2240
SmiMI	CAYNNNNRTG	4 cut(s)	171, 495, 815, 1597
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	5 cut(s)	597, 1061, 1298, 1808, 2594
SspI	AATATT	3 cut(s)	301, 1019, 1948
SspMI	CTAG	6 cut(s)	233, 518, 1118, 1370, 1925, 2376
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	7 cut(s)	45, 160, 796, 1214, 2061, 2381, 2613
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	7 cut(s)	214, 648, 913, 1413, 1585, 1596, 2217
TaiI	ACGT	5 cut(s)	144, 711, 771, 885, 2010
TaqI	TCGA	5 cut(s)	314, 461, 1174, 2234, 2429
TatI	WGTACW	2 cut(s)	827, 1150
Tru1I	TTAA	8 cut(s)	138, 404, 747, 1098, 1146, 1181, 1404, 2211
Tru9I	TTAA	8 cut(s)	138, 404, 747, 1098, 1146, 1181, 1404, 2211
TscAI	CASTG	8 cut(s)	640, 1060, 1588, 1599, 1618, 1836, 2222, 2409
TseFI	GTSAC	2 cut(s)	305, 631
TseI	GCWGC	7 cut(s)	242, 992, 1435, 1784, 2066, 2159, 2456
Tsp45I	GTSAC	2 cut(s)	305, 631
TspGWI	ACGGA	4 cut(s)	523, 1253, 1335, 2064
TspRI	CASTG	8 cut(s)	640, 1060, 1588, 1599, 1618, 1836, 2222, 2409
Tth111I	GACNNNGTC	1 cut(s)	1880
VneI	GTGCAC	2 cut(s)	473, 690
VpaK11BI	GGWCC	3 cut(s)	55, 1244, 2240
XapI	RAATTY	5 cut(s)	257, 355, 363, 1176, 1483
XceI	RCATGY	4 cut(s)	83, 470, 2153, 2390
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1596, 2593
XmiI	GTMKAC	2 cut(s)	1090, 2439
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	6 cut(s)	233, 518, 1118, 1370, 1925, 2376
ZrmI	AGTACT	2 cut(s)	829, 1152
Zsp2I	ATGCAT	2 cut(s)	587, 2315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.