zinc finger (ubiquitin-hydrolase) domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42160 AT2G42160 AT2G42160 |
| fragaria_vesca | FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430 |
| malus_domestica | MD02G1027800.v1.1 MD15G1169400.v1.1 |
| prunus_persica | Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 |
| pyrus_communis | pycom02g02280 pycom07g20490 pycom15g15110 |
| rosa_chinensis | RchiOBHm_Chr2g0087861 |
| rosa_multiflora | Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00153160 |
| rosa_rugosa | Rorug01G0479000 Rorug01G0479100 Rorug03G0142200 |
| rosa_samantha | Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100 |
| rosa_wichuraiana | Rw2G002640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1205 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 622 |
| AccI | GTMKAC | 1 cut(s) | 1378 |
| AccII | CGCG | 1 cut(s) | 1383 |
| AciI | CCGC | 4 cut(s) | 139, 277, 960, 1225 |
| AclWI | GGATC | 4 cut(s) | 145, 198, 539, 1279 |
| AcsI | RAATTY | 1 cut(s) | 467 |
| AcuI | CTGAAG | 2 cut(s) | 1124, 1206 |
| AfaI | GTAC | 1 cut(s) | 1046 |
| AflIII | ACRYGT | 1 cut(s) | 518 |
| AgsI | TTSAA | 7 cut(s) | 53, 394, 864, 990, 1154, 1301, 1334 |
| AjnI | CCWGG | 1 cut(s) | 912 |
| AluBI | AGCT | 8 cut(s) | 92, 180, 198, 371, 840, 965, 1138, 1259 |
| AluI | AGCT | 8 cut(s) | 92, 180, 198, 371, 840, 965, 1138, 1259 |
| Alw21I | GWGCWC | 2 cut(s) | 94, 896 |
| Alw26I | GTCTC | 2 cut(s) | 31, 295 |
| AlwI | GGATC | 4 cut(s) | 145, 198, 539, 1279 |
| Ama87I | CYCGRG | 1 cut(s) | 1415 |
| AoxI | GGCC | 2 cut(s) | 925, 1233 |
| ApeKI | GCWGC | 2 cut(s) | 482, 1259 |
| ApoI | RAATTY | 1 cut(s) | 467 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1377, 1409 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 404 |
| AsuHPI | GGTGA | 2 cut(s) | 124, 845 |
| AsuII | TTCGAA | 1 cut(s) | 608 |
| AvaI | CYCGRG | 1 cut(s) | 1415 |
| BanII | GRGCYC | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 1318 |
| Bbv12I | GWGCWC | 2 cut(s) | 94, 896 |
| BbvCI | CCTCAGC | 1 cut(s) | 423 |
| BbvI | GCAGC | 2 cut(s) | 469, 1246 |
| BccI | CCATC | 7 cut(s) | 127, 162, 311, 368, 421, 866, 1367 |
| BciT130I | CCWGG | 1 cut(s) | 914 |
| BciVI | GTATCC | 2 cut(s) | 940, 1210 |
| BclI | TGATCA | 2 cut(s) | 358, 580 |
| BcoDI | GTCTC | 2 cut(s) | 31, 295 |
| BfaI | CTAG | 2 cut(s) | 195, 1268 |
| BfmI | CTRYAG | 1 cut(s) | 483 |
| BfuI | GTATCC | 2 cut(s) | 940, 1210 |
| BisI | GCNGC | 2 cut(s) | 483, 1260 |
| BlpI | GCTNAGC | 1 cut(s) | 93 |
| BlsI | GCNGC | 2 cut(s) | 484, 1261 |
| BmcAI | AGTACT | 1 cut(s) | 1046 |
| Bme1390I | CCNGG | 1 cut(s) | 914 |
| BmeT110I | CYCGRG | 1 cut(s) | 1415 |
| BmiI | GGNNCC | 1 cut(s) | 1390 |
| BmrFI | CCNGG | 1 cut(s) | 914 |
| BmsI | GCATC | 3 cut(s) | 89, 288, 790 |
| BpiI | GAAGAC | 1 cut(s) | 1318 |
| Bpu10I | CCTNAGC | 1 cut(s) | 423 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 93 |
| Bpu14I | TTCGAA | 1 cut(s) | 608 |
| BpuEI | CTTGAG | 1 cut(s) | 554 |
| BsaAI | YACGTR | 1 cut(s) | 519 |
| BsaI | GGTCTC | 1 cut(s) | 31 |
| BsaJI | CCNNGG | 1 cut(s) | 913 |
| BsaWI | WCCGGW | 1 cut(s) | 1455 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 182, 212 |
| Bse1I | ACTGG | 6 cut(s) | 502, 555, 773, 897, 1400, 1421 |
| Bse3DI | GCAATG | 1 cut(s) | 1262 |
| BseBI | CCWGG | 1 cut(s) | 914 |
| BseDI | CCNNGG | 1 cut(s) | 913 |
| BseGI | GGATG | 3 cut(s) | 6, 297, 1378 |
| BseMI | GCAATG | 1 cut(s) | 1262 |
| BseMII | CTCAG | 6 cut(s) | 25, 107, 408, 414, 684, 1443 |
| BseNI | ACTGG | 6 cut(s) | 502, 555, 773, 897, 1400, 1421 |
| BseRI | GAGGAG | 2 cut(s) | 90, 235 |
| BseXI | GCAGC | 2 cut(s) | 469, 1246 |
| Bsh1236I | CGCG | 1 cut(s) | 1383 |
| Bsh1285I | CGRYCG | 1 cut(s) | 139 |
| BshFI | GGCC | 2 cut(s) | 927, 1235 |
| BsiEI | CGRYCG | 1 cut(s) | 139 |
| BsiHKAI | GWGCWC | 2 cut(s) | 94, 896 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1415 |
| BsiSI | CCGG | 1 cut(s) | 1456 |
| BslFI | GGGAC | 3 cut(s) | 932, 1047, 1398 |
| BsmAI | GTCTC | 2 cut(s) | 31, 295 |
| BsmFI | GGGAC | 3 cut(s) | 932, 1047, 1398 |
| BsmI | GAATGC | 1 cut(s) | 754 |
| BsnI | GGCC | 2 cut(s) | 927, 1235 |
| Bso31I | GGTCTC | 1 cut(s) | 31 |
| BsoBI | CYCGRG | 1 cut(s) | 1415 |
| Bsp119I | TTCGAA | 1 cut(s) | 608 |
| Bsp1286I | GDGCHC | 2 cut(s) | 94, 896 |
| Bsp143I | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 93 |
| BspACI | CCGC | 4 cut(s) | 139, 277, 960, 1225 |
| BspANI | GGCC | 2 cut(s) | 927, 1235 |
| BspCNI | CTCAG | 6 cut(s) | 24, 106, 409, 415, 685, 1442 |
| BspFNI | CGCG | 1 cut(s) | 1383 |
| BspLI | GGNNCC | 1 cut(s) | 1390 |
| BspMAI | CTGCAG | 1 cut(s) | 487 |
| BspPI | GGATC | 4 cut(s) | 145, 198, 539, 1279 |
| BspT104I | TTCGAA | 1 cut(s) | 608 |
| BspTNI | GGTCTC | 1 cut(s) | 31 |
| BsrDI | GCAATG | 1 cut(s) | 1262 |
| BsrI | ACTGG | 6 cut(s) | 502, 555, 773, 897, 1400, 1421 |
| BssECI | CCNNGG | 1 cut(s) | 913 |
| BssMI | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| BssNAI | GTATAC | 1 cut(s) | 1379 |
| Bst1107I | GTATAC | 1 cut(s) | 1379 |
| Bst2UI | CCWGG | 1 cut(s) | 914 |
| Bst4CI | ACNGT | 5 cut(s) | 674, 923, 1044, 1324, 1393 |
| Bst6I | CTCTTC | 4 cut(s) | 221, 308, 1158, 1242 |
| BstBAI | YACGTR | 1 cut(s) | 519 |
| BstBI | TTCGAA | 1 cut(s) | 608 |
| BstC8I | GCNNGC | 2 cut(s) | 709, 1079 |
| BstDEI | CTNAG | 6 cut(s) | 11, 93, 417, 423, 693, 1429 |
| BstF5I | GGATG | 3 cut(s) | 6, 297, 1378 |
| BstFNI | CGCG | 1 cut(s) | 1383 |
| BstKTI | GATC | 7 cut(s) | 153, 206, 361, 547, 583, 1274, 1297 |
| BstMAI | GTCTC | 2 cut(s) | 31, 295 |
| BstMBI | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| BstMCI | CGRYCG | 1 cut(s) | 139 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 488 |
| BstNI | CCWGG | 1 cut(s) | 914 |
| BstNSI | RCATGY | 1 cut(s) | 711 |
| BstSCI | CCNGG | 1 cut(s) | 912 |
| BstSFI | CTRYAG | 1 cut(s) | 483 |
| BstUI | CGCG | 1 cut(s) | 1383 |
| BstV1I | GCAGC | 2 cut(s) | 469, 1246 |
| BstV2I | GAAGAC | 1 cut(s) | 1318 |
| BstX2I | RGATCY | 1 cut(s) | 544 |
| BstYI | RGATCY | 1 cut(s) | 544 |
| BstZ17I | GTATAC | 1 cut(s) | 1379 |
| BsuI | GTATCC | 2 cut(s) | 940, 1210 |
| BsuRI | GGCC | 2 cut(s) | 927, 1235 |
| BtsCI | GGATG | 3 cut(s) | 6, 297, 1378 |
| BtsI | GCAGTG | 1 cut(s) | 784 |
| BtsIMutI | CAGTG | 6 cut(s) | 562, 599, 766, 784, 1182, 1407 |
| Cac8I | GCNNGC | 2 cut(s) | 709, 1079 |
| Csp6I | GTAC | 1 cut(s) | 1045 |
| CviAII | CATG | 1 cut(s) | 708 |
| CviQI | GTAC | 1 cut(s) | 1045 |
| DdeI | CTNAG | 6 cut(s) | 11, 93, 417, 423, 693, 1429 |
| DpnI | GATC | 7 cut(s) | 152, 205, 360, 546, 582, 1273, 1296 |
| DpnII | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 622 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 622 |
| Eam1104I | CTCTTC | 4 cut(s) | 221, 308, 1158, 1242 |
| EarI | CTCTTC | 4 cut(s) | 221, 308, 1158, 1242 |
| EciI | GGCGGA | 1 cut(s) | 1240 |
| Ecl136II | GAGCTC | 1 cut(s) | 92 |
| Eco24I | GRGCYC | 1 cut(s) | 94 |
| Eco31I | GGTCTC | 1 cut(s) | 31 |
| Eco53kI | GAGCTC | 1 cut(s) | 92 |
| Eco57I | CTGAAG | 2 cut(s) | 1124, 1206 |
| Eco88I | CYCGRG | 1 cut(s) | 1415 |
| EcoICRI | GAGCTC | 1 cut(s) | 92 |
| EcoRII | CCWGG | 1 cut(s) | 912 |
| EcoT38I | GRGCYC | 1 cut(s) | 94 |
| FaeI | CATG | 1 cut(s) | 711 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1331, 1363 |
| FaqI | GGGAC | 3 cut(s) | 932, 1047, 1398 |
| FatI | CATG | 1 cut(s) | 707 |
| FauI | CCCGC | 1 cut(s) | 284 |
| FbaI | TGATCA | 2 cut(s) | 358, 580 |
| FblI | GTMKAC | 1 cut(s) | 1378 |
| Fnu4HI | GCNGC | 2 cut(s) | 483, 1260 |
| FokI | GGATG | 2 cut(s) | 284, 1385 |
| FriOI | GRGCYC | 1 cut(s) | 94 |
| Fsp4HI | GCNGC | 2 cut(s) | 483, 1260 |
| FspBI | CTAG | 2 cut(s) | 195, 1268 |
| GluI | GCNGC | 2 cut(s) | 483, 1260 |
| HaeIII | GGCC | 2 cut(s) | 927, 1235 |
| HapII | CCGG | 1 cut(s) | 1456 |
| Hin1II | CATG | 1 cut(s) | 711 |
| HincII | GTYRAC | 5 cut(s) | 28, 650, 1025, 1123, 1192 |
| HindII | GTYRAC | 5 cut(s) | 28, 650, 1025, 1123, 1192 |
| HinfI | GANTC | 5 cut(s) | 29, 62, 272, 986, 1052 |
| HpaI | GTTAAC | 2 cut(s) | 1123, 1192 |
| HpaII | CCGG | 1 cut(s) | 1456 |
| HphI | GGTGA | 2 cut(s) | 124, 845 |
| Hpy166II | GTNNAC | 6 cut(s) | 28, 650, 1025, 1123, 1192, 1379 |
| Hpy188I | TCNGA | 8 cut(s) | 14, 34, 295, 358, 367, 418, 1143, 1366 |
| Hpy188III | TCNNGA | 8 cut(s) | 201, 251, 310, 533, 548, 797, 1301, 1415 |
| Hpy8I | GTNNAC | 6 cut(s) | 28, 650, 1025, 1123, 1192, 1379 |
| Hpy99I | CGWCG | 1 cut(s) | 227 |
| HpyAV | CCTTC | 5 cut(s) | 743, 1022, 1225, 1379, 1431 |
| HpyCH4III | ACNGT | 5 cut(s) | 674, 923, 1044, 1324, 1393 |
| HpyCH4IV | ACGT | 1 cut(s) | 518 |
| HpyCH4V | TGCA | 5 cut(s) | 485, 603, 1019, 1132, 1262 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 488 |
| HpyF3I | CTNAG | 6 cut(s) | 11, 93, 417, 423, 693, 1429 |
| HpySE526I | ACGT | 1 cut(s) | 518 |
| Hsp92II | CATG | 1 cut(s) | 711 |
| Ksp22I | TGATCA | 2 cut(s) | 358, 580 |
| KspAI | GTTAAC | 2 cut(s) | 1123, 1192 |
| Kzo9I | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| LmnI | GCTCC | 3 cut(s) | 203, 962, 1135 |
| Lsp1109I | GCAGC | 2 cut(s) | 469, 1246 |
| LweI | GCATC | 3 cut(s) | 89, 288, 790 |
| MaeI | CTAG | 2 cut(s) | 195, 1268 |
| MaeII | ACGT | 1 cut(s) | 518 |
| MaeIII | GTNAC | 3 cut(s) | 510, 833, 906 |
| MalI | GATC | 7 cut(s) | 152, 205, 360, 546, 582, 1273, 1296 |
| MboI | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| MfeI | CAATTG | 1 cut(s) | 990 |
| MflI | RGATCY | 1 cut(s) | 544 |
| MhlI | GDGCHC | 2 cut(s) | 94, 896 |
| MluCI | AATT | 6 cut(s) | 235, 467, 867, 954, 990, 1113 |
| MlyI | GAGTC | 1 cut(s) | 23 |
| MmeI | TCCRAC | 1 cut(s) | 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 404 |
| MseI | TTAA | 7 cut(s) | 105, 668, 854, 972, 1122, 1191, 1349 |
| MspI | CCGG | 1 cut(s) | 1456 |
| MspR9I | CCNGG | 1 cut(s) | 914 |
| MunI | CAATTG | 1 cut(s) | 990 |
| Mva1269I | GAATGC | 1 cut(s) | 754 |
| MvaI | CCWGG | 1 cut(s) | 914 |
| MvnI | CGCG | 1 cut(s) | 1383 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 488 |
| NdeII | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| NlaIII | CATG | 1 cut(s) | 711 |
| NlaIV | GGNNCC | 1 cut(s) | 1390 |
| NmuCI | GTSAC | 2 cut(s) | 833, 906 |
| NspI | RCATGY | 1 cut(s) | 711 |
| NspV | TTCGAA | 1 cut(s) | 608 |
| PaeI | GCATGC | 1 cut(s) | 711 |
| PctI | GAATGC | 1 cut(s) | 754 |
| PdmI | GAANNNNTTC | 1 cut(s) | 404 |
| PfeI | GAWTC | 4 cut(s) | 62, 272, 986, 1052 |
| PkrI | GCNGC | 2 cut(s) | 484, 1261 |
| PleI | GAGTC | 1 cut(s) | 23 |
| PpsI | GAGTC | 1 cut(s) | 23 |
| Ppu21I | YACGTR | 1 cut(s) | 519 |
| PsiI | TTATAA | 1 cut(s) | 1205 |
| Psp124BI | GAGCTC | 1 cut(s) | 94 |
| Psp6I | CCWGG | 1 cut(s) | 912 |
| PspGI | CCWGG | 1 cut(s) | 912 |
| PspN4I | GGNNCC | 1 cut(s) | 1390 |
| PstI | CTGCAG | 1 cut(s) | 487 |
| PsuI | RGATCY | 1 cut(s) | 544 |
| RsaI | GTAC | 1 cut(s) | 1046 |
| RsaNI | GTAC | 1 cut(s) | 1045 |
| SacI | GAGCTC | 1 cut(s) | 94 |
| SaqAI | TTAA | 7 cut(s) | 105, 668, 854, 972, 1122, 1191, 1349 |
| SatI | GCNGC | 2 cut(s) | 483, 1260 |
| Sau3AI | GATC | 7 cut(s) | 150, 203, 358, 544, 580, 1271, 1294 |
| ScaI | AGTACT | 1 cut(s) | 1046 |
| SchI | GAGTC | 1 cut(s) | 23 |
| ScrFI | CCNGG | 1 cut(s) | 914 |
| SduI | GDGCHC | 2 cut(s) | 94, 896 |
| SfaNI | GCATC | 3 cut(s) | 89, 288, 790 |
| SfcI | CTRYAG | 1 cut(s) | 483 |
| SfuI | TTCGAA | 1 cut(s) | 608 |
| SmlI | CTYRAG | 1 cut(s) | 533 |
| SmoI | CTYRAG | 1 cut(s) | 533 |
| SphI | GCATGC | 1 cut(s) | 711 |
| Sse9I | AATT | 6 cut(s) | 235, 467, 867, 954, 990, 1113 |
| SsiI | CCGC | 4 cut(s) | 139, 277, 960, 1225 |
| SspMI | CTAG | 2 cut(s) | 195, 1268 |
| SstI | GAGCTC | 1 cut(s) | 94 |
| StyD4I | CCNGG | 1 cut(s) | 912 |
| TaaI | ACNGT | 5 cut(s) | 674, 923, 1044, 1324, 1393 |
| TaiI | ACGT | 1 cut(s) | 521 |
| TaqI | TCGA | 5 cut(s) | 83, 252, 608, 640, 999 |
| TasI | AATT | 6 cut(s) | 235, 467, 867, 954, 990, 1113 |
| TatI | WGTACW | 1 cut(s) | 1044 |
| TfiI | GAWTC | 4 cut(s) | 62, 272, 986, 1052 |
| Tru1I | TTAA | 7 cut(s) | 105, 668, 854, 972, 1122, 1191, 1349 |
| Tru9I | TTAA | 7 cut(s) | 105, 668, 854, 972, 1122, 1191, 1349 |
| TscAI | CASTG | 6 cut(s) | 562, 599, 773, 791, 1189, 1407 |
| TseFI | GTSAC | 2 cut(s) | 833, 906 |
| TseI | GCWGC | 2 cut(s) | 482, 1259 |
| Tsp45I | GTSAC | 2 cut(s) | 833, 906 |
| TspDTI | ATGAA | 6 cut(s) | 8, 208, 295, 836, 1065, 1318 |
| TspGWI | ACGGA | 4 cut(s) | 13, 37, 251, 1385 |
| TspRI | CASTG | 6 cut(s) | 562, 599, 773, 791, 1189, 1407 |
| XapI | RAATTY | 1 cut(s) | 467 |
| XceI | RCATGY | 1 cut(s) | 711 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 920 |
| XmiI | GTMKAC | 1 cut(s) | 1378 |
| XmnI | GAANNNNTTC | 1 cut(s) | 404 |
| XspI | CTAG | 2 cut(s) | 195, 1268 |
| ZrmI | AGTACT | 1 cut(s) | 1046 |