AT2G42160

zinc finger (ubiquitin-hydrolase) domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17574641 .. 17577495
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42160.3

Sequence Viewer

Length: 1467 bp
ATGTTCATCCTCAGAGTTCATTCCGTTGACTCCGAGAGACCAATCTCCGTTGAAGAAGAAGAATCAGGTTTCACTTACGCATCGAAAAGAGCTCAGCCTCCTCTTAAACTCATACAACCATCTCTCAAACTCACCGACCGCAAAGGCTTGATCCATCTCTATCGCAAATCTTCACATAGCTCTCTGCCTAACCCTAGCTCCCGATCCACCACTCTCTTCATCGTCGCTGTTCCCAATTATCTCTCCTCTCTCGATTTTATCCGTTTCTGTGATTCCCGCATCTCCCAAGTCTCCGACATCCTCTTCATCAGGAACGATGGAATGGAAGATAGATATAGTGTTCTTATCACATTTTCTGATCAATCCGAAGCTGATGGTTTCTACAACAACTTGAATGGGAAAAAGTTCGCACCATCTGAGGCTGAGGTTTGTCATATTCTATATGTAATGTCGGTGGAACACACAGAATTTGATGAGGTTGCTGCAGAAGCACCTACTGGATTTACCGAGTTACCTACGTGTCCAATATGTCTTGAGAGATTAGATCCTGACACCAGTGGTATAGTTAGCACTCTTTGTGATCACTCGTTTCAGTGTTCTTGCACTTCGAAATGGACTTATCTGTCTTGTCAGGTTTGTCGATTGTGTCAACAGCAAGATGAGATATTAAACTGTTCTATTTGTGGAAAAACTGAGAATGTATGGGCATGCCTTGTCTGTGGCTTCGTAGGTTGTGGAAGATACAAGGAAGGGCATTCTATTAGGCACTGGAAAGAAACGCATCACTGCTATTCTCTTGATTTGCGAACACAACAAATCTGGGATTATGTTGGTGACAGCTATGTTCATCGGTTAAACCATTCAAAAATTGATGGAAAGTCAGTAGAGATGAGCACCAGTTGTCTGTCACACCAGGGGGACTGTGGCCTCTGTGAGTGTAGTGAGGATACAGGAATTAGCGGAGCTATCTTTAACAGCAAAGTTGATTCAATTGTAATCGAGTATAATGACCTTCTTGCAAGTCAACTAAAGGGACAGCGACAGTACTATGAATCTCTCATTGTTGAGGCGAGAAGCAAGCAAGAAAGTAGTATTGCCGAAGCAGTAGAGCAAATTGTTGTTAACACAATGCAGGAGCTTCAGAATAAGATTGAAAAATGTGAAGAGGAAAAAAGTGGTATCACTGAAGTTAACACAAAACTTATAAAAGAGCAGGATACTTGGCGGAAGAAGGCCAAAGAAATAGAAGAGAGGGAAGCTGCATTGCTAGGATCAAAAGACGAGATGATAACTGATCTTCAAGAACAGATAAGAGATATTACGGTCTTCATTGAAGCCAAGAAAACCTTAAAGAAGATGTCATCAGATACGGATGGTATACGCGAAGGAACCGTCTTACCAGTGCCTATCAGTCCCGAGCCAGTTTCCTCAGTTAGAAGGCAAAAGAAGTCAAACCGGAGAAAGTAA

Protein Analysis

488

Amino Acids

55.21

Weight (kDa)

5.52

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRAP2 PF07576 64 - 160 6.2e-35 BRCA1-associated protein 2
zf-UBP PF02148 225 - 285 1.2e-22 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1205
AasI GACNNNNNNGTC 1 cut(s) 622
AccI GTMKAC 1 cut(s) 1378
AccII CGCG 1 cut(s) 1383
AciI CCGC 4 cut(s) 139, 277, 960, 1225
AclWI GGATC 4 cut(s) 145, 198, 539, 1279
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 1124, 1206
AfaI GTAC 1 cut(s) 1046
AflIII ACRYGT 1 cut(s) 518
AgsI TTSAA 7 cut(s) 53, 394, 864, 990, 1154, 1301, 1334
AjnI CCWGG 1 cut(s) 912
AluBI AGCT 8 cut(s) 92, 180, 198, 371, 840, 965, 1138, 1259
AluI AGCT 8 cut(s) 92, 180, 198, 371, 840, 965, 1138, 1259
Alw21I GWGCWC 2 cut(s) 94, 896
Alw26I GTCTC 2 cut(s) 31, 295
AlwI GGATC 4 cut(s) 145, 198, 539, 1279
Ama87I CYCGRG 1 cut(s) 1415
AoxI GGCC 2 cut(s) 925, 1233
ApeKI GCWGC 2 cut(s) 482, 1259
ApoI RAATTY 1 cut(s) 467
ArsI GACNNNNNNTTYG 2 cut(s) 1377, 1409
Asp700I GAANNNNTTC 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 124, 845
AsuII TTCGAA 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 1415
BanII GRGCYC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 1318
Bbv12I GWGCWC 2 cut(s) 94, 896
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 469, 1246
BccI CCATC 7 cut(s) 127, 162, 311, 368, 421, 866, 1367
BciT130I CCWGG 1 cut(s) 914
BciVI GTATCC 2 cut(s) 940, 1210
BclI TGATCA 2 cut(s) 358, 580
BcoDI GTCTC 2 cut(s) 31, 295
BfaI CTAG 2 cut(s) 195, 1268
BfmI CTRYAG 1 cut(s) 483
BfuI GTATCC 2 cut(s) 940, 1210
BisI GCNGC 2 cut(s) 483, 1260
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 2 cut(s) 484, 1261
BmcAI AGTACT 1 cut(s) 1046
Bme1390I CCNGG 1 cut(s) 914
BmeT110I CYCGRG 1 cut(s) 1415
BmiI GGNNCC 1 cut(s) 1390
BmrFI CCNGG 1 cut(s) 914
BmsI GCATC 3 cut(s) 89, 288, 790
BpiI GAAGAC 1 cut(s) 1318
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 913
BsaWI WCCGGW 1 cut(s) 1455
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bse1I ACTGG 6 cut(s) 502, 555, 773, 897, 1400, 1421
Bse3DI GCAATG 1 cut(s) 1262
BseBI CCWGG 1 cut(s) 914
BseDI CCNNGG 1 cut(s) 913
BseGI GGATG 3 cut(s) 6, 297, 1378
BseMI GCAATG 1 cut(s) 1262
BseMII CTCAG 6 cut(s) 25, 107, 408, 414, 684, 1443
BseNI ACTGG 6 cut(s) 502, 555, 773, 897, 1400, 1421
BseRI GAGGAG 2 cut(s) 90, 235
BseXI GCAGC 2 cut(s) 469, 1246
Bsh1236I CGCG 1 cut(s) 1383
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 927, 1235
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 94, 896
BsiHKCI CYCGRG 1 cut(s) 1415
BsiSI CCGG 1 cut(s) 1456
BslFI GGGAC 3 cut(s) 932, 1047, 1398
BsmAI GTCTC 2 cut(s) 31, 295
BsmFI GGGAC 3 cut(s) 932, 1047, 1398
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 2 cut(s) 927, 1235
Bso31I GGTCTC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 1415
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 94, 896
Bsp143I GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 4 cut(s) 139, 277, 960, 1225
BspANI GGCC 2 cut(s) 927, 1235
BspCNI CTCAG 6 cut(s) 24, 106, 409, 415, 685, 1442
BspFNI CGCG 1 cut(s) 1383
BspLI GGNNCC 1 cut(s) 1390
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 4 cut(s) 145, 198, 539, 1279
BspT104I TTCGAA 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 1262
BsrI ACTGG 6 cut(s) 502, 555, 773, 897, 1400, 1421
BssECI CCNNGG 1 cut(s) 913
BssMI GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
BssNAI GTATAC 1 cut(s) 1379
Bst1107I GTATAC 1 cut(s) 1379
Bst2UI CCWGG 1 cut(s) 914
Bst4CI ACNGT 5 cut(s) 674, 923, 1044, 1324, 1393
Bst6I CTCTTC 4 cut(s) 221, 308, 1158, 1242
BstBAI YACGTR 1 cut(s) 519
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 709, 1079
BstDEI CTNAG 6 cut(s) 11, 93, 417, 423, 693, 1429
BstF5I GGATG 3 cut(s) 6, 297, 1378
BstFNI CGCG 1 cut(s) 1383
BstKTI GATC 7 cut(s) 153, 206, 361, 547, 583, 1274, 1297
BstMAI GTCTC 2 cut(s) 31, 295
BstMBI GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 1 cut(s) 914
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 912
BstSFI CTRYAG 1 cut(s) 483
BstUI CGCG 1 cut(s) 1383
BstV1I GCAGC 2 cut(s) 469, 1246
BstV2I GAAGAC 1 cut(s) 1318
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BstZ17I GTATAC 1 cut(s) 1379
BsuI GTATCC 2 cut(s) 940, 1210
BsuRI GGCC 2 cut(s) 927, 1235
BtsCI GGATG 3 cut(s) 6, 297, 1378
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 6 cut(s) 562, 599, 766, 784, 1182, 1407
Cac8I GCNNGC 2 cut(s) 709, 1079
Csp6I GTAC 1 cut(s) 1045
CviAII CATG 1 cut(s) 708
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 6 cut(s) 11, 93, 417, 423, 693, 1429
DpnI GATC 7 cut(s) 152, 205, 360, 546, 582, 1273, 1296
DpnII GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
DrdI GACNNNNNNGTC 1 cut(s) 622
DseDI GACNNNNNNGTC 1 cut(s) 622
Eam1104I CTCTTC 4 cut(s) 221, 308, 1158, 1242
EarI CTCTTC 4 cut(s) 221, 308, 1158, 1242
EciI GGCGGA 1 cut(s) 1240
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 1124, 1206
Eco88I CYCGRG 1 cut(s) 1415
EcoICRI GAGCTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 912
EcoT38I GRGCYC 1 cut(s) 94
FaeI CATG 1 cut(s) 711
FalI AAGNNNNNCTT 2 cut(s) 1331, 1363
FaqI GGGAC 3 cut(s) 932, 1047, 1398
FatI CATG 1 cut(s) 707
FauI CCCGC 1 cut(s) 284
FbaI TGATCA 2 cut(s) 358, 580
FblI GTMKAC 1 cut(s) 1378
Fnu4HI GCNGC 2 cut(s) 483, 1260
FokI GGATG 2 cut(s) 284, 1385
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 483, 1260
FspBI CTAG 2 cut(s) 195, 1268
GluI GCNGC 2 cut(s) 483, 1260
HaeIII GGCC 2 cut(s) 927, 1235
HapII CCGG 1 cut(s) 1456
Hin1II CATG 1 cut(s) 711
HincII GTYRAC 5 cut(s) 28, 650, 1025, 1123, 1192
HindII GTYRAC 5 cut(s) 28, 650, 1025, 1123, 1192
HinfI GANTC 5 cut(s) 29, 62, 272, 986, 1052
HpaI GTTAAC 2 cut(s) 1123, 1192
HpaII CCGG 1 cut(s) 1456
HphI GGTGA 2 cut(s) 124, 845
Hpy166II GTNNAC 6 cut(s) 28, 650, 1025, 1123, 1192, 1379
Hpy188I TCNGA 8 cut(s) 14, 34, 295, 358, 367, 418, 1143, 1366
Hpy188III TCNNGA 8 cut(s) 201, 251, 310, 533, 548, 797, 1301, 1415
Hpy8I GTNNAC 6 cut(s) 28, 650, 1025, 1123, 1192, 1379
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 743, 1022, 1225, 1379, 1431
HpyCH4III ACNGT 5 cut(s) 674, 923, 1044, 1324, 1393
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 5 cut(s) 485, 603, 1019, 1132, 1262
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 6 cut(s) 11, 93, 417, 423, 693, 1429
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 1 cut(s) 711
Ksp22I TGATCA 2 cut(s) 358, 580
KspAI GTTAAC 2 cut(s) 1123, 1192
Kzo9I GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
LmnI GCTCC 3 cut(s) 203, 962, 1135
Lsp1109I GCAGC 2 cut(s) 469, 1246
LweI GCATC 3 cut(s) 89, 288, 790
MaeI CTAG 2 cut(s) 195, 1268
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 3 cut(s) 510, 833, 906
MalI GATC 7 cut(s) 152, 205, 360, 546, 582, 1273, 1296
MboI GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
MfeI CAATTG 1 cut(s) 990
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 2 cut(s) 94, 896
MluCI AATT 6 cut(s) 235, 467, 867, 954, 990, 1113
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 7 cut(s) 105, 668, 854, 972, 1122, 1191, 1349
MspI CCGG 1 cut(s) 1456
MspR9I CCNGG 1 cut(s) 914
MunI CAATTG 1 cut(s) 990
Mva1269I GAATGC 1 cut(s) 754
MvaI CCWGG 1 cut(s) 914
MvnI CGCG 1 cut(s) 1383
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeII GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
NlaIII CATG 1 cut(s) 711
NlaIV GGNNCC 1 cut(s) 1390
NmuCI GTSAC 2 cut(s) 833, 906
NspI RCATGY 1 cut(s) 711
NspV TTCGAA 1 cut(s) 608
PaeI GCATGC 1 cut(s) 711
PctI GAATGC 1 cut(s) 754
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 4 cut(s) 62, 272, 986, 1052
PkrI GCNGC 2 cut(s) 484, 1261
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 519
PsiI TTATAA 1 cut(s) 1205
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 912
PspGI CCWGG 1 cut(s) 912
PspN4I GGNNCC 1 cut(s) 1390
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 7 cut(s) 105, 668, 854, 972, 1122, 1191, 1349
SatI GCNGC 2 cut(s) 483, 1260
Sau3AI GATC 7 cut(s) 150, 203, 358, 544, 580, 1271, 1294
ScaI AGTACT 1 cut(s) 1046
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 914
SduI GDGCHC 2 cut(s) 94, 896
SfaNI GCATC 3 cut(s) 89, 288, 790
SfcI CTRYAG 1 cut(s) 483
SfuI TTCGAA 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 711
Sse9I AATT 6 cut(s) 235, 467, 867, 954, 990, 1113
SsiI CCGC 4 cut(s) 139, 277, 960, 1225
SspMI CTAG 2 cut(s) 195, 1268
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 912
TaaI ACNGT 5 cut(s) 674, 923, 1044, 1324, 1393
TaiI ACGT 1 cut(s) 521
TaqI TCGA 5 cut(s) 83, 252, 608, 640, 999
TasI AATT 6 cut(s) 235, 467, 867, 954, 990, 1113
TatI WGTACW 1 cut(s) 1044
TfiI GAWTC 4 cut(s) 62, 272, 986, 1052
Tru1I TTAA 7 cut(s) 105, 668, 854, 972, 1122, 1191, 1349
Tru9I TTAA 7 cut(s) 105, 668, 854, 972, 1122, 1191, 1349
TscAI CASTG 6 cut(s) 562, 599, 773, 791, 1189, 1407
TseFI GTSAC 2 cut(s) 833, 906
TseI GCWGC 2 cut(s) 482, 1259
Tsp45I GTSAC 2 cut(s) 833, 906
TspDTI ATGAA 6 cut(s) 8, 208, 295, 836, 1065, 1318
TspGWI ACGGA 4 cut(s) 13, 37, 251, 1385
TspRI CASTG 6 cut(s) 562, 599, 773, 791, 1189, 1407
XapI RAATTY 1 cut(s) 467
XceI RCATGY 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 1378
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 2 cut(s) 195, 1268
ZrmI AGTACT 1 cut(s) 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.