Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Forward (+)

20187407 .. 20187682

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTTCTTCCTCCAAGTCCACTCAGTGGACACCAACCACCCGGTCAGCCTTGAAGACGCTGAGCTCACCACCATCTCCGCTGCCACCACCCAATCAAACCTTAGGTTCAGCGAGTGGAGAGGAATTGCGCACCTATTTCAAACACAAGGAAACTCGTTGCTGCCAAACACGGTGCCGAGTCTACTCTCCTCTTCGTCGTCGCCGAGTCCACTCTCCTTTTCGATGCAGCATTTGGGCATGGTGACGCTATCGACGTGGGGCTGCAAGATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

91

Amino Acids

9.92

Weight (kDa)

5.99

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	181
AciI	CCGC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	53, 140
AjiI	CACGTC	1 cut(s)	255
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	66
ApeKI	GCWGC	4 cut(s)	80, 160, 226, 261
AspLEI	GCGC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	58, 253
AxyI	CCTNAGG	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	67, 147, 238, 248
BccI	CCATC	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	41
BisI	GCNGC	4 cut(s)	81, 161, 227, 262
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	4 cut(s)	82, 162, 228, 263
Bme1390I	CCNGG	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse21I	CCTNAGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	36, 51
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	67, 147, 238, 248
BshNI	GGYRCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	2 cut(s)	35, 52
BspLI	GGNNCC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	196
BstDEI	CTNAG	4 cut(s)	22, 60, 101, 273
BstHHI	GCGC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	67, 147, 238, 248
BstV2I	GAAGAC	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	101
BtrI	CACGTC	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	30
CfoI	GCGC	1 cut(s)	130
CseI	GACGC	2 cut(s)	65, 253
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	3 cut(s)	48, 64, 261
CviKI_1	RGCY	3 cut(s)	48, 64, 261
DdeI	CTNAG	4 cut(s)	22, 60, 101, 273
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	64
Eco81I	CCTNAGG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	1 cut(s)	241
FaiI	YATR	1 cut(s)	239
FatI	CATG	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	81, 161, 227, 262
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	4 cut(s)	81, 161, 227, 262
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	4 cut(s)	81, 161, 227, 262
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	2 cut(s)	65, 253
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	3 cut(s)	178, 205, 268
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	58, 253
Hpy166II	GTNNAC	4 cut(s)	19, 28, 182, 209
Hpy8I	GTNNAC	4 cut(s)	19, 28, 182, 209
Hpy99I	CGWCG	3 cut(s)	199, 202, 256
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	226, 264
HpyF3I	CTNAG	4 cut(s)	22, 60, 101, 273
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	1 cut(s)	128
LpnPI	CCDG	1 cut(s)	54
Lsp1109I	GCAGC	4 cut(s)	67, 147, 238, 248
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	65, 183
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	187, 214
MnlI	CCTC	3 cut(s)	20, 113, 199
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	41
NciI	CCSGG	1 cut(s)	41
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	2 cut(s)	201, 228
NmuCI	GTSAC	1 cut(s)	241
NsbI	TGCGCA	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 251
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	82, 162, 228, 263
PleI	GAGTC	2 cut(s)	186, 213
PpsI	GAGTC	2 cut(s)	186, 213
Psp124BI	GAGCTC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	66
SatI	GCNGC	4 cut(s)	81, 161, 227, 262
SchI	GAGTC	2 cut(s)	187, 214
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	66, 102, 107, 135, 257
SfaNI	GCATC	1 cut(s)	213
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	221, 251
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	268
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	80, 160, 226, 261
Tsp45I	GTSAC	1 cut(s)	241
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.