Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Forward (+)

29426584 .. 29426991

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGTTTGCCAATCCCAAGGCCTTATTCCCTCCTGCCGACGATCGCCACCTCTCCCTCTTCAATTGCAGCCACCACAAACACCTTTGCGCTTCTCTCTCTTCCCCATCCGAGTCGACTCAGCGATTCGCAATGTTCTTCCTCCGAGTCAACTGAGTGGACACTGACCACCCTATCAGCCTTGAAGACACAGAGTTCACCACCATCTCCGCCACCACCGCCCAATCAAACCCTAGGTTCAGCAAGCAGAGAGGAATCGCGCACCTGTTTCGAACACGAAGTAACTCGTCTCTGCATAGACACGACGCTGAGTCCACTCTCCTCTTCATTGTCACCGAGTCCACTTTCTTCTTCGATGCAGCGTTTGGGCATGGTGAAGCTGTCGACGTGGGGCTACAAGATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.4

Weight (kDa)

7.75

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	115, 383
AccII	CGCG	1 cut(s)	259
AciI	CCGC	2 cut(s)	209, 218
AgsI	TTSAA	2 cut(s)	63, 184
AhdI	GACNNNNNGTC	1 cut(s)	309
AjiI	CACGTC	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	68, 358
AspA2I	CCTAGG	1 cut(s)	232
AspLEI	GCGC	2 cut(s)	91, 261
AsuHPI	GGTGA	3 cut(s)	189, 324, 385
AsuII	TTCGAA	1 cut(s)	270
AvrII	CCTAGG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	80, 370
BccI	CCATC	2 cut(s)	114, 211
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	233
BisI	GCNGC	2 cut(s)	69, 359
BlnI	CCTAGG	1 cut(s)	232
BlsI	GCNGC	2 cut(s)	70, 360
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	387
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	17, 232
Bse3DI	GCAATG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	17, 232
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	3 cut(s)	133, 144, 299
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	80, 370
Bsh1236I	CGCG	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	209, 218
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	3 cut(s)	132, 145, 300
BspFNI	CGCG	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	17, 232
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	17, 232
Bst6I	CTCTTC	3 cut(s)	64, 105, 328
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	4 cut(s)	119, 153, 308, 405
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	91, 261
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	42
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	80, 370
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	2 cut(s)	91, 261
CseI	GACGC	1 cut(s)	313
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	5 cut(s)	22, 71, 179, 379, 393
CviKI_1	RGCY	5 cut(s)	22, 71, 179, 379, 393
DdeI	CTNAG	4 cut(s)	119, 153, 308, 405
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DriI	GACNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	64, 105, 328
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	3 cut(s)	64, 105, 328
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	17, 232
Eco147I	AGGCCT	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	17, 232
ErhI	CCWWGG	2 cut(s)	17, 232
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	1 cut(s)	373
FaiI	YATR	2 cut(s)	296, 371
FatI	CATG	1 cut(s)	369
FblI	GTMKAC	2 cut(s)	115, 383
Fnu4HI	GCNGC	2 cut(s)	69, 359
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	69, 359
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	2 cut(s)	90, 260
GluI	GCNGC	2 cut(s)	69, 359
HaeIII	GGCC	1 cut(s)	22
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	2 cut(s)	91, 261
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	2 cut(s)	89, 259
HinP1I	GCGC	2 cut(s)	89, 259
HincII	GTYRAC	3 cut(s)	116, 150, 384
HindII	GTYRAC	3 cut(s)	116, 150, 384
HinfI	GANTC	8 cut(s)	112, 117, 125, 146, 254, 310, 337, 400
HphI	GGTGA	3 cut(s)	189, 324, 385
Hpy166II	GTNNAC	7 cut(s)	116, 150, 159, 197, 314, 341, 384
Hpy188I	TCNGA	2 cut(s)	111, 145
Hpy8I	GTNNAC	7 cut(s)	116, 150, 159, 197, 314, 341, 384
Hpy99I	CGWCG	3 cut(s)	43, 307, 388
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	68, 294, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	119, 153, 308, 405
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	2 cut(s)	89, 259
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	2 cut(s)	47, 277
Lsp1109I	GCAGC	2 cut(s)	80, 370
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	280, 330
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	7 cut(s)	51, 92, 129, 196, 315, 339, 342
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	5 cut(s)	111, 121, 155, 319, 346
MnlI	CCTC	6 cut(s)	41, 61, 67, 151, 244, 331
MunI	CAATTG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	125, 254, 400
PkrI	GCNGC	2 cut(s)	70, 360
Ple19I	CGATCG	1 cut(s)	45
PleI	GAGTC	5 cut(s)	111, 120, 154, 318, 345
PpsI	GAGTC	5 cut(s)	111, 120, 154, 318, 345
PvuI	CGATCG	1 cut(s)	45
SalI	GTCGAC	2 cut(s)	114, 382
SatI	GCNGC	2 cut(s)	69, 359
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	5 cut(s)	111, 121, 155, 319, 346
SetI	ASST	6 cut(s)	53, 86, 238, 266, 381, 389
SfaNI	GCATC	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	270
Sse9I	AATT	1 cut(s)	63
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	209, 218
SspMI	CTAG	1 cut(s)	233
StuI	AGGCCT	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	17, 232
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	4 cut(s)	115, 270, 353, 383
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	3 cut(s)	125, 254, 400
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	2 cut(s)	68, 358
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	168
XmaJI	CCTAGG	1 cut(s)	232
XmiI	GTMKAC	2 cut(s)	115, 383
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.