Prupe.6G053200_v2.0.a1

Brca1-associated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
3733397 .. 3737377
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G053200.1

Sequence Viewer

Length: 1596 bp
ATGATCTCCCCTCAAATTCATTCTATGAACCAATCGGGCCAAGAGCTTTGTCTCTCAAAATTGTCATTTCTATTCTCTCTCTTTTCTCTTTCCCCAACCAAGTCGACTCAGAAACCCACAATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCCCCTCAGCCTCGAAGACGCCGAGTTCACCACTATCACAACTTCCAAGATCACCAGTGCTACTGAATCAAACCCTAACACCAGCCCCAAATTCAGCGAACGAAGAGGCATAGCTCACCTGTTCCGAAGCATAGGACACTCGTCGCTGCCAAACAGTCCTGCCTCTCGATCCACTCTCCTCTTCGTCATTGCTGTTCCCAACTACCTCTCCTTCGACGACTTTATCCGCTTCTGTGGGTCCCGAATCGACCATGCCCTCGAACTCGTCTTCATCAGGAACGATGGGATGGAAGATCGGTACAGTGTTTTAGTTGAGCTGAAGAATCAGATGACCGCTGACGGATTTTATCACACTTTAAATGGGAAGAAGTATTCGCCTGGAGAGGCCGAGGTGTGCCACATTCTGTTTCTGCTTTCTGTGGACTACACAGATTCAGATGAAATAGCTGGGACTCCTCCAGAAGGATGTACTGAATTACCAACTTGCCCAGTTTGCCTTGAGAGATTGGATGCAGACACTAGTGGAATAGCGAGTACACTTTGTGACCATTCATTTCAATGTCCATGCATTTCAAAATGGACTTATTTATCTTGTCAGGTTTGCCGATTTTGTCAGCAGCAGGATGAAAAGCCAGCTTGCTCTGTATGTGGAATATCTGTGAATCCCTGGGTTTGCGTAATATGTGGTTTTGTAGGATGTGGAAGATATACAGAAGGTCATGCTGTTAGGCACTGGAAGGATACACAACATTGCTATTCTCTTGAGTTGAACAGGCAGCAGATCTGGGATTACGTTGGTGATGCTTATGTTCACCGCCTGAACCAATCGAAAATTGATGGCAAGCTAATAACTGATACGGATTCTCAATGTATGTCAGTGGAAGGGGATTGTGACAGGTGTGAATGCAGTGACGATTCTGGAATTAGTGGAGCCCTCTATAGCAGCAAAGTTGAAACTATTGTAGACGAGTATAACCGACTTCTTGCAAGTCAGCTTGAGACTCAAAGACAATATTATGAATCTCTACTTATGGAGGCCAAAAGTAAAAAGGAAAGTTCAATTTTAGAAGCAGTGGAGAAGGCTGTAAATTCCAAGATGCAGGATATTCAAGCGAAACTAGAGAAATGTCTTGAGGAAAGAAATGCTGTTGCAGATATCAACCGTAATCTCATCAAGGACCAAGAAACCTGGCGTGGGAAGTTGAAGGAAATTGAAGTGAGGGAAGCTGCATCACTGAGGTTAAGAGAGGAGAAGATGGTTGATCTGGAAGAACAGATTAGAGATCTTACAGTCTACATTGAAGCCCAAAAAACACTTAACGACATGACGGATTCAGATGGCATCAAAGGGGGAACGCTCTTGCCTGTACCTTCTTCAAAGCAATCTTCTCCTGCCAACTCTAGAAGACAAACAAAATCTGGCCGAAGACGGAACTAA

Protein Analysis

532

Amino Acids

59.71

Weight (kDa)

5.51

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 145
AccI GTMKAC 3 cut(s) 104, 1122, 1452
AciI CCGC 3 cut(s) 385, 492, 973
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 1579
AcsI RAATTY 3 cut(s) 15, 248, 1246
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 177
AdeI CACNNNGTG 2 cut(s) 145, 701
AfaI GTAC 4 cut(s) 458, 628, 694, 1527
AfiI CCNNNNNNNGG 3 cut(s) 145, 620, 1353
AhlI ACTAGT 1 cut(s) 677
AjnI CCWGG 3 cut(s) 535, 824, 1346
AluBI AGCT 8 cut(s) 46, 272, 475, 605, 794, 1003, 1153, 1385
AluI AGCT 8 cut(s) 46, 272, 475, 605, 794, 1003, 1153, 1385
Alw26I GTCTC 2 cut(s) 56, 1151
AlwI GGATC 1 cut(s) 321
AoxI GGCC 4 cut(s) 37, 543, 1194, 1579
ApeKI GCWGC 5 cut(s) 304, 775, 934, 1101, 1385
ApoI RAATTY 3 cut(s) 15, 248, 1246
AspS9I GGNCC 3 cut(s) 37, 396, 1336
AsuHPI GGTGA 5 cut(s) 178, 202, 266, 962, 968
AvaII GGWCC 2 cut(s) 396, 1336
BanII GRGCYC 1 cut(s) 1093
BbsI GAAGAC 4 cut(s) 180, 418, 1570, 1591
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 5 cut(s) 291, 787, 946, 1113, 1372
BccI CCATC 5 cut(s) 434, 439, 989, 1408, 1490
BciT130I CCWGG 3 cut(s) 537, 826, 1348
BciVI GTATCC 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 56, 1151
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 3 cut(s) 678, 1277, 1560
BfmI CTRYAG 1 cut(s) 1096
BfuI GTATCC 1 cut(s) 892
BglII AGATCT 2 cut(s) 939, 1441
BisI GCNGC 5 cut(s) 305, 776, 935, 1102, 1386
BlsI GCNGC 5 cut(s) 306, 777, 936, 1103, 1387
Bme1390I CCNGG 3 cut(s) 537, 826, 1348
Bme18I GGWCC 2 cut(s) 396, 1336
BmgT120I GGNCC 3 cut(s) 37, 396, 1336
BmiI GGNNCC 3 cut(s) 397, 398, 1090
BmrFI CCNGG 3 cut(s) 537, 826, 1348
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 5 cut(s) 658, 949, 1245, 1397, 1509
BmuI ACTGGG 1 cut(s) 641
BoxI GACNNNNGTC 1 cut(s) 298
BpiI GAAGAC 4 cut(s) 180, 418, 1570, 1591
BpmI CTGGAG 2 cut(s) 558, 600
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 4 cut(s) 677, 941, 1175, 1310
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 546, 824, 825
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 620, 1353
Bse1I ACTGG 3 cut(s) 213, 647, 896
Bse3DI GCAATG 2 cut(s) 345, 907
BseBI CCWGG 3 cut(s) 537, 826, 1348
BseDI CCNNGG 3 cut(s) 546, 824, 825
BseGI GGATG 5 cut(s) 450, 629, 673, 787, 860
BseLI CCNNNNNNNGG 3 cut(s) 145, 620, 1353
BseMI GCAATG 2 cut(s) 345, 907
BseMII CTCAG 4 cut(s) 122, 156, 178, 1385
BseNI ACTGG 3 cut(s) 213, 647, 896
BseRI GAGGAG 3 cut(s) 326, 603, 1421
BseXI GCAGC 5 cut(s) 291, 787, 946, 1113, 1372
BseYI CCCAGC 1 cut(s) 605
BshFI GGCC 4 cut(s) 39, 545, 1196, 1581
BslFI GGGAC 2 cut(s) 382, 622
BslI CCNNNNNNNGG 3 cut(s) 145, 620, 1353
BsmAI GTCTC 2 cut(s) 56, 1151
BsmFI GGGAC 2 cut(s) 382, 622
BsmI GAATGC 1 cut(s) 1067
BsnI GGCC 4 cut(s) 39, 545, 1196, 1581
Bsp1286I GDGCHC 1 cut(s) 1093
Bsp143I GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
BspACI CCGC 3 cut(s) 385, 492, 973
BspANI GGCC 4 cut(s) 39, 545, 1196, 1581
BspCNI CTCAG 4 cut(s) 121, 155, 177, 1386
BspLI GGNNCC 3 cut(s) 397, 398, 1090
BspPI GGATC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 345, 907
BsrI ACTGG 3 cut(s) 213, 647, 896
BssECI CCNNGG 3 cut(s) 546, 824, 825
BssMI GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 537, 826, 1348
Bst4CI ACNGT 4 cut(s) 314, 461, 1322, 1450
Bst6I CTCTTC 2 cut(s) 256, 344
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 792, 796, 1001
BstDEI CTNAG 4 cut(s) 108, 142, 164, 1394
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 5 cut(s) 450, 629, 673, 787, 860
BstKTI GATC 7 cut(s) 6, 210, 329, 454, 942, 1423, 1444
BstMAI GTCTC 2 cut(s) 56, 1151
BstMBI GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
BstMWI GCNNNNNNNGC 1 cut(s) 651
BstNI CCWGG 3 cut(s) 537, 826, 1348
BstPAI GACNNNNGTC 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 535, 824, 1346
BstSFI CTRYAG 1 cut(s) 1096
BstV1I GCAGC 5 cut(s) 291, 787, 946, 1113, 1372
BstV2I GAAGAC 4 cut(s) 180, 418, 1570, 1591
BstX2I RGATCY 2 cut(s) 939, 1441
BstYI RGATCY 2 cut(s) 939, 1441
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 4 cut(s) 39, 545, 1196, 1581
BtsCI GGATG 5 cut(s) 450, 629, 673, 787, 860
BtsI GCAGTG 2 cut(s) 1072, 1236
BtsIMutI CAGTG 8 cut(s) 150, 220, 466, 889, 1041, 1072, 1236, 1391
Cac8I GCNNGC 3 cut(s) 792, 796, 1001
Cfr13I GGNCC 3 cut(s) 37, 396, 1336
CseI GACGC 1 cut(s) 185
Csp6I GTAC 4 cut(s) 457, 627, 693, 1526
CviAII CATG 4 cut(s) 410, 723, 878, 1483
CviQI GTAC 4 cut(s) 457, 627, 693, 1526
DdeI CTNAG 4 cut(s) 108, 142, 164, 1394
DpnI GATC 7 cut(s) 5, 209, 328, 453, 941, 1422, 1443
DpnII GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
DraI TTTAAA 1 cut(s) 516
DraIII CACNNNGTG 2 cut(s) 145, 701
EaeI YGGCCR 1 cut(s) 1579
Eam1104I CTCTTC 2 cut(s) 256, 344
EarI CTCTTC 2 cut(s) 256, 344
Eco24I GRGCYC 1 cut(s) 1093
Eco32I GATATC 1 cut(s) 1315
Eco47I GGWCC 2 cut(s) 396, 1336
Eco57I CTGAAG 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 3 cut(s) 535, 824, 1346
EcoRV GATATC 1 cut(s) 1315
EcoT22I ATGCAT 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 1093
FaeI CATG 4 cut(s) 413, 726, 881, 1486
FaqI GGGAC 2 cut(s) 382, 622
FatI CATG 4 cut(s) 409, 722, 877, 1482
FblI GTMKAC 3 cut(s) 104, 1122, 1452
Fnu4HI GCNGC 5 cut(s) 305, 776, 935, 1102, 1386
FokI GGATG 5 cut(s) 457, 636, 680, 794, 867
FriOI GRGCYC 1 cut(s) 1093
Fsp4HI GCNGC 5 cut(s) 305, 776, 935, 1102, 1386
FspBI CTAG 3 cut(s) 678, 1277, 1560
GluI GCNGC 5 cut(s) 305, 776, 935, 1102, 1386
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 2 cut(s) 558, 600
HaeIII GGCC 4 cut(s) 39, 545, 1196, 1581
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 413, 726, 881, 1486
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HphI GGTGA 5 cut(s) 178, 202, 266, 962, 968
Hpy166II GTNNAC 9 cut(s) 105, 139, 148, 186, 580, 695, 970, 1123, 1453
Hpy188I TCNGA 6 cut(s) 111, 134, 284, 486, 595, 1495
Hpy188III TCNNGA 9 cut(s) 324, 399, 433, 617, 920, 1077, 1289, 1424, 1560
Hpy8I GTNNAC 9 cut(s) 105, 139, 148, 186, 580, 695, 970, 1123, 1453
Hpy99I CGWCG 2 cut(s) 304, 377
HpyAV CCTTC 8 cut(s) 379, 614, 866, 889, 1034, 1231, 1357, 1539
HpyCH4III ACNGT 4 cut(s) 314, 461, 1322, 1450
HpyCH4IV ACGT 1 cut(s) 951
HpyCH4V TGCA 7 cut(s) 671, 726, 1065, 1145, 1258, 1310, 1388
HpyF10VI GCNNNNNNNGC 1 cut(s) 651
HpyF3I CTNAG 4 cut(s) 108, 142, 164, 1394
HpySE526I ACGT 1 cut(s) 951
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 413, 726, 881, 1486
KflI GGGWCCC 1 cut(s) 396
Kzo9I GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
LmnI GCTCC 1 cut(s) 1088
Lsp1109I GCAGC 5 cut(s) 291, 787, 946, 1113, 1372
LweI GCATC 5 cut(s) 658, 949, 1245, 1397, 1509
MaeI CTAG 3 cut(s) 678, 1277, 1560
MaeII ACGT 1 cut(s) 951
MaeIII GTNAC 3 cut(s) 701, 1049, 1067
MalI GATC 7 cut(s) 5, 209, 328, 453, 941, 1422, 1443
MboI GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
MflI RGATCY 2 cut(s) 939, 1441
MhlI GDGCHC 1 cut(s) 1093
MluCI AATT 9 cut(s) 15, 59, 248, 632, 990, 1080, 1218, 1246, 1368
MlyI GAGTC 4 cut(s) 100, 144, 604, 1153
Mph1103I ATGCAT 1 cut(s) 728
MseI TTAA 3 cut(s) 515, 1400, 1476
MslI CAYNNNNRTG 1 cut(s) 715
MspA1I CMGCKG 1 cut(s) 494
MspR9I CCNGG 3 cut(s) 537, 826, 1348
Mva1269I GAATGC 1 cut(s) 1067
MvaI CCWGG 3 cut(s) 537, 826, 1348
MwoI GCNNNNNNNGC 1 cut(s) 651
NdeII GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
NlaIII CATG 4 cut(s) 413, 726, 881, 1486
NlaIV GGNNCC 3 cut(s) 397, 398, 1090
NmeAIII GCCGAG 2 cut(s) 205, 571
NmuCI GTSAC 3 cut(s) 701, 1049, 1067
NsiI ATGCAT 1 cut(s) 728
PasI CCCWGGG 1 cut(s) 825
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 1067
PfeI GAWTC 9 cut(s) 224, 402, 481, 590, 820, 1019, 1073, 1178, 1490
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 5 cut(s) 306, 777, 936, 1103, 1387
PleI GAGTC 4 cut(s) 100, 143, 604, 1153
PpsI GAGTC 4 cut(s) 100, 143, 604, 1153
PpuMI RGGWCCY 1 cut(s) 396
PshAI GACNNNNGTC 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 3 cut(s) 535, 824, 1346
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 3 cut(s) 535, 824, 1346
PspN4I GGNNCC 3 cut(s) 397, 398, 1090
PspPI GGNCC 3 cut(s) 37, 396, 1336
PspPPI RGGWCCY 1 cut(s) 396
PsuI RGATCY 2 cut(s) 939, 1441
RsaI GTAC 4 cut(s) 458, 628, 694, 1527
RsaNI GTAC 4 cut(s) 457, 627, 693, 1526
RseI CAYNNNNRTG 1 cut(s) 715
SalI GTCGAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 515, 1400, 1476
SatI GCNGC 5 cut(s) 305, 776, 935, 1102, 1386
Sau3AI GATC 7 cut(s) 3, 207, 326, 451, 939, 1420, 1441
Sau96I GGNCC 3 cut(s) 37, 396, 1336
SchI GAGTC 4 cut(s) 100, 144, 604, 1153
ScrFI CCNGG 3 cut(s) 537, 826, 1348
SduI GDGCHC 1 cut(s) 1093
SfaNI GCATC 5 cut(s) 658, 949, 1245, 1397, 1509
SfcI CTRYAG 1 cut(s) 1096
SinI GGWCC 2 cut(s) 396, 1336
SmiMI CAYNNNNRTG 1 cut(s) 715
SmlI CTYRAG 4 cut(s) 656, 920, 1154, 1289
SmoI CTYRAG 4 cut(s) 656, 920, 1154, 1289
SpeI ACTAGT 1 cut(s) 677
Sse9I AATT 9 cut(s) 15, 59, 248, 632, 990, 1080, 1218, 1246, 1368
SsiI CCGC 3 cut(s) 385, 492, 973
SspI AATATT 1 cut(s) 1172
SspMI CTAG 3 cut(s) 678, 1277, 1560
StyD4I CCNGG 3 cut(s) 535, 824, 1346
TaaI ACNGT 4 cut(s) 314, 461, 1322, 1450
TaiI ACGT 1 cut(s) 954
TaqI TCGA 7 cut(s) 104, 171, 325, 372, 405, 417, 986
TasI AATT 9 cut(s) 15, 59, 248, 632, 990, 1080, 1218, 1246, 1368
TatI WGTACW 2 cut(s) 626, 692
TfiI GAWTC 9 cut(s) 224, 402, 481, 590, 820, 1019, 1073, 1178, 1490
Tru1I TTAA 3 cut(s) 515, 1400, 1476
Tru9I TTAA 3 cut(s) 515, 1400, 1476
TscAI CASTG 8 cut(s) 150, 220, 466, 896, 1041, 1072, 1236, 1398
TseFI GTSAC 3 cut(s) 701, 1049, 1067
TseI GCWGC 5 cut(s) 304, 775, 934, 1101, 1385
Tsp45I GTSAC 3 cut(s) 701, 1049, 1067
TspDTI ATGAA 7 cut(s) 8, 41, 418, 612, 699, 798, 1191
TspGWI ACGGA 3 cut(s) 513, 1031, 1502
TspRI CASTG 8 cut(s) 150, 220, 466, 896, 1041, 1072, 1236, 1398
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 396, 1336
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 3 cut(s) 15, 248, 1246
XbaI TCTAGA 1 cut(s) 1559
XmiI GTMKAC 3 cut(s) 104, 1122, 1452
XspI CTAG 3 cut(s) 678, 1277, 1560
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.