Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Reverse (-)

2141075 .. 2144694

Gene Structure 3620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1027800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGTTCATCCTCCGAGTTCACTCAGTGGACACCAACCACCCTCTCAGCCTCGAAGACGCCGACTTCACCGCCGTCACAACTTCCAAGACCACCGCTGCGGCTGAATCTGACCCTAAAACCACCCCCACACCCAAATTCAGCGAGCGAAGAGGAATCGCCCATTTGTTTCGAAAAATCAGACAGTCGTCGCTGCCGTGCCACGCCTCTCGCTCCCCCATCCTCTTCGTCGTTGCCGTTCCCAACTACCTCTCCTTCGACGACTTCATCCGCTTCTGCGGTTCCCGCATCGACCATGTCCTCGAACTCGTATTCATCAGGAACGATGGAATGGAAGACAGGTACAGTGTTTTGATTGAATGTAAGAATCGGGACACGGCTGGTGAATTTTATAGCACTTTTAATGGGAGGAAGTATTCGCCTGGAGAGGCTGAGTTGTGCCATATCCTGTTTCTGCAATCTGTGGACTACACAGAATCAGAAGAAATAGCTGGCATTCCAGAGAATGAATTTACTGAGTTACCCACTTGCCCAGTTTGCCTTGAGAGATTGGATGCAGACACAAGTGGAATAGCGAGTACACTTTGTGATCATTCGTTTCAATGTCCCTGCATTTCAAAATGGACTTATTTGTCTTGTCAGGTTTGCCGACTATGTCAGCAGCAGGATGAAAAACCAGCTTGCTCTGTCTGTGGAATATCAGTGAATCCCTGGATTTGTATAATATGTGGTTTTGTAGGATGTGGAAGATATACTGAAGGCCATGCTGTTAAGCACTGGAAGGATACGCAACATTGCTATTCTCTTGAGTTGGACAGGCAGCAGATCTGGGATTATGTTGGTGATGCTTATGTTCACCGCCTGAACCAATCAAAAGTTGATGGAAAAATAATAAATTTTACAGATTCTCATTGTATGTCACTGGAAGAGGCTTTTGACGGTTGTGAATGTAGTGCTGATTCTGGAATTAGTGGAGCCCTCTATAGTAGCAAAGTTGACACTATTGTAGATGAGTATAACCGACTTGTTGCCAGTCAGCTTGAGAATCAAAGACAATATTATGAATCTCTACTTATGGAGGCCAAAAGCAAAAAGAAAAGTACAATTTCAGAAGCGGTGGAGAAGGCTGTAAATTCCAAGATGCAGGATTTACAAGCGAAACTGGAGAAATGTCTTGAGGAAAGAAATGCCGTTGCAGATATCAACCGCAGTCTCATCAAGGACCAAGAAACTTGGCGCAGAAAGTTGAAGGAAATCGATGAGAGGGAAGCTGCATCGCTGAGGTTAAGAGAGGAAAAGATAGTCGATTTGGAAGAACAGATTAGAGATCTTACGGTCTATATTCGTGCCCAAAAAACACTTGATGACATGAAGGGCTCGGACAGCATAAAAGGCGGAACAGTATTGCCTGTACCTTCAAAGCAATCTTCTCCTGCCAACTCCAGAAGACAGACCAAATCTGGCCGGAGACGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

492

Amino Acids

55.61

Weight (kDa)

5.75

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRAP2	PF07576	68 - 163	5.5e-32	BRCA1-associated protein 2
zf-UBP	PF02148	227 - 288	3.8e-21	Zn-finger in ubiquitin-hydrolases and other protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AcoI	YGGCCR	1 cut(s)	1459
AcsI	RAATTY	5 cut(s)	134, 383, 506, 892, 1129
AcuI	CTGAAG	1 cut(s)	774
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	2 cut(s)	25, 584
AfaI	GTAC	4 cut(s)	341, 577, 1099, 1410
AgsI	TTSAA	5 cut(s)	356, 599, 615, 1246, 1416
AjnI	CCWGG	2 cut(s)	418, 707
AluBI	AGCT	4 cut(s)	488, 677, 1036, 1268
AluI	AGCT	4 cut(s)	488, 677, 1036, 1268
Alw26I	GTCTC	2 cut(s)	1214, 1459
AoxI	GGCC	3 cut(s)	757, 1077, 1459
ApeKI	GCWGC	5 cut(s)	95, 190, 658, 817, 1268
ApoI	RAATTY	5 cut(s)	134, 383, 506, 892, 1129
AspLEI	GCGC	1 cut(s)	1236
AspS9I	GGNCC	1 cut(s)	1219
AsuHPI	GGTGA	4 cut(s)	58, 392, 845, 851
AsuII	TTCGAA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	1219
BaeGI	GKGCMC	1 cut(s)	1348
BanII	GRGCYC	2 cut(s)	976, 1376
BbsI	GAAGAC	3 cut(s)	60, 339, 1450
BbvCI	CCTCAGC	1 cut(s)	1277
BbvI	GCAGC	5 cut(s)	82, 177, 670, 829, 1255
BccI	CCATC	3 cut(s)	224, 317, 872
BceAI	ACGGC	5 cut(s)	56, 178, 218, 390, 1172
BciT130I	CCWGG	2 cut(s)	420, 709
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	1214, 1459
BfaI	CTAG	1 cut(s)	1474
BfmI	CTRYAG	1 cut(s)	979
BfuI	GTATCC	1 cut(s)	775
BglII	AGATCT	2 cut(s)	822, 1324
BisI	GCNGC	6 cut(s)	96, 99, 191, 659, 818, 1269
BlsI	GCNGC	6 cut(s)	97, 100, 192, 660, 819, 1270
Bme1390I	CCNGG	2 cut(s)	420, 709
Bme18I	GGWCC	1 cut(s)	1219
BmgT120I	GGNCC	1 cut(s)	1219
BmiI	GGNNCC	2 cut(s)	280, 973
BmrFI	CCNGG	2 cut(s)	420, 709
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	5 cut(s)	294, 541, 832, 1128, 1280
BmuI	ACTGGG	1 cut(s)	524
BoxI	GACNNNNGTC	1 cut(s)	184
BpiI	GAAGAC	3 cut(s)	60, 339, 1450
BpmI	CTGGAG	3 cut(s)	441, 1181, 1423
Bpu10I	CCTNAGC	1 cut(s)	1277
Bpu14I	TTCGAA	1 cut(s)	169
BpuEI	CTTGAG	4 cut(s)	560, 824, 1058, 1193
Bsa29I	ATCGAT	1 cut(s)	1254
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse1I	ACTGG	5 cut(s)	530, 779, 924, 1029, 1164
Bse3DI	GCAATG	1 cut(s)	790
BseBI	CCWGG	2 cut(s)	420, 709
BseCI	ATCGAT	1 cut(s)	1254
BseDI	CCNNGG	1 cut(s)	707
BseGI	GGATG	6 cut(s)	6, 216, 264, 556, 670, 743
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	5 cut(s)	36, 58, 420, 504, 1268
BseNI	ACTGG	5 cut(s)	530, 779, 924, 1029, 1164
BseSI	GKGCMC	1 cut(s)	1348
BseXI	GCAGC	5 cut(s)	82, 177, 670, 829, 1255
BshFI	GGCC	3 cut(s)	759, 1079, 1461
BshVI	ATCGAT	1 cut(s)	1254
BsiSI	CCGG	1 cut(s)	1462
BslFI	GGGAC	2 cut(s)	383, 588
BsmAI	GTCTC	2 cut(s)	1214, 1459
BsmBI	CGTCTC	1 cut(s)	1459
BsmFI	GGGAC	2 cut(s)	383, 588
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	759, 1079, 1461
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	3 cut(s)	976, 1348, 1376
Bsp143I	GATC	3 cut(s)	586, 822, 1324
BspANI	GGCC	3 cut(s)	759, 1079, 1461
BspCNI	CTCAG	5 cut(s)	35, 57, 421, 505, 1269
BspDI	ATCGAT	1 cut(s)	1254
BspLI	GGNNCC	2 cut(s)	280, 973
BspT104I	TTCGAA	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	790
BsrI	ACTGG	5 cut(s)	530, 779, 924, 1029, 1164
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	3 cut(s)	586, 822, 1324
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	420, 709
Bst4CI	ACNGT	5 cut(s)	183, 344, 938, 1333, 1399
Bst6I	CTCTTC	3 cut(s)	142, 227, 918
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	143, 490, 679
BstDEI	CTNAG	5 cut(s)	22, 44, 429, 513, 1277
BstF5I	GGATG	6 cut(s)	6, 216, 264, 556, 670, 743
BstHHI	GCGC	1 cut(s)	1236
BstKTI	GATC	3 cut(s)	589, 825, 1327
BstMAI	GTCTC	2 cut(s)	1214, 1459
BstMBI	GATC	3 cut(s)	586, 822, 1324
BstMWI	GCNNNNNNNGC	4 cut(s)	282, 534, 1380, 1389
BstNI	CCWGG	2 cut(s)	420, 709
BstPAI	GACNNNNGTC	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	418, 707
BstSFI	CTRYAG	1 cut(s)	979
BstSLI	GKGCMC	1 cut(s)	1348
BstV1I	GCAGC	5 cut(s)	82, 177, 670, 829, 1255
BstV2I	GAAGAC	3 cut(s)	60, 339, 1450
BstX2I	RGATCY	2 cut(s)	822, 1324
BstYI	RGATCY	2 cut(s)	822, 1324
Bsu15I	ATCGAT	1 cut(s)	1254
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	759, 1079, 1461
BsuTUI	ATCGAT	1 cut(s)	1254
BtgZI	GCGATG	1 cut(s)	1257
BtsCI	GGATG	6 cut(s)	6, 216, 264, 556, 670, 743
BtsIMutI	CAGTG	5 cut(s)	30, 349, 705, 772, 917
Cac8I	GCNNGC	3 cut(s)	143, 490, 679
CfoI	GCGC	1 cut(s)	1236
Cfr13I	GGNCC	1 cut(s)	1219
ClaI	ATCGAT	1 cut(s)	1254
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	4 cut(s)	340, 576, 1098, 1409
CviAII	CATG	3 cut(s)	293, 761, 1366
CviQI	GTAC	4 cut(s)	340, 576, 1098, 1409
DdeI	CTNAG	5 cut(s)	22, 44, 429, 513, 1277
DpnI	GATC	3 cut(s)	588, 824, 1326
DpnII	GATC	3 cut(s)	586, 822, 1324
DraIII	CACNNNGTG	2 cut(s)	25, 584
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	1459
Eam1104I	CTCTTC	3 cut(s)	142, 227, 918
EarI	CTCTTC	3 cut(s)	142, 227, 918
EciI	GGCGGA	1 cut(s)	1407
Eco24I	GRGCYC	2 cut(s)	976, 1376
Eco32I	GATATC	1 cut(s)	1198
Eco47I	GGWCC	1 cut(s)	1219
Eco57I	CTGAAG	1 cut(s)	774
EcoRII	CCWGG	2 cut(s)	418, 707
EcoRV	GATATC	1 cut(s)	1198
EcoT38I	GRGCYC	2 cut(s)	976, 1376
Esp3I	CGTCTC	1 cut(s)	1459
FaeI	CATG	3 cut(s)	296, 764, 1369
FaqI	GGGAC	2 cut(s)	383, 588
FatI	CATG	3 cut(s)	292, 760, 1365
FauI	CCCGC	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	6 cut(s)	96, 99, 191, 659, 818, 1269
FokI	GGATG	5 cut(s)	203, 251, 563, 677, 750
FriOI	GRGCYC	2 cut(s)	976, 1376
Fsp4HI	GCNGC	6 cut(s)	96, 99, 191, 659, 818, 1269
FspBI	CTAG	1 cut(s)	1474
GlaI	GCGC	1 cut(s)	1235
GluI	GCNGC	6 cut(s)	96, 99, 191, 659, 818, 1269
GsuI	CTGGAG	3 cut(s)	441, 1181, 1423
HaeIII	GGCC	3 cut(s)	759, 1079, 1461
HapII	CCGG	1 cut(s)	1462
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	1236
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	296, 764, 1369
Hin6I	GCGC	1 cut(s)	1234
HinP1I	GCGC	1 cut(s)	1234
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HinfI	GANTC	9 cut(s)	104, 153, 364, 473, 703, 902, 956, 1042, 1061
HpaII	CCGG	1 cut(s)	1462
HphI	GGTGA	4 cut(s)	58, 392, 845, 851
Hpy166II	GTNNAC	6 cut(s)	19, 28, 463, 578, 853, 994
Hpy188I	TCNGA	6 cut(s)	14, 109, 179, 478, 1108, 1378
Hpy188III	TCNNGA	7 cut(s)	316, 368, 497, 803, 960, 1172, 1440
Hpy8I	GTNNAC	6 cut(s)	19, 28, 463, 578, 853, 994
Hpy99I	CGWCG	3 cut(s)	190, 230, 260
HpyAV	CCTTC	7 cut(s)	262, 749, 772, 1114, 1240, 1363, 1422
HpyCH4III	ACNGT	5 cut(s)	183, 344, 938, 1333, 1399
HpyCH4V	TGCA	6 cut(s)	454, 554, 609, 1141, 1193, 1271
HpyF10VI	GCNNNNNNNGC	4 cut(s)	282, 534, 1380, 1389
HpyF3I	CTNAG	5 cut(s)	22, 44, 429, 513, 1277
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	296, 764, 1369
HspAI	GCGC	1 cut(s)	1234
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	586, 822, 1324
LmnI	GCTCC	2 cut(s)	215, 971
Lsp1109I	GCAGC	5 cut(s)	82, 177, 670, 829, 1255
LweI	GCATC	5 cut(s)	294, 541, 832, 1128, 1280
MaeI	CTAG	1 cut(s)	1474
MaeIII	GTNAC	3 cut(s)	73, 516, 915
MalI	GATC	3 cut(s)	588, 824, 1326
MboI	GATC	3 cut(s)	586, 822, 1324
MflI	RGATCY	2 cut(s)	822, 1324
MhlI	GDGCHC	3 cut(s)	976, 1348, 1376
MluCI	AATT	7 cut(s)	134, 383, 506, 892, 963, 1101, 1129
MmeI	TCCRAC	1 cut(s)	789
MseI	TTAA	3 cut(s)	399, 768, 1283
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	1462
MspR9I	CCNGG	2 cut(s)	420, 709
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	420, 709
MwoI	GCNNNNNNNGC	4 cut(s)	282, 534, 1380, 1389
NdeII	GATC	3 cut(s)	586, 822, 1324
NlaIII	CATG	3 cut(s)	296, 764, 1369
NlaIV	GGNNCC	2 cut(s)	280, 973
NmuCI	GTSAC	2 cut(s)	73, 915
NspV	TTCGAA	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 191, 231
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	9 cut(s)	104, 153, 364, 473, 703, 902, 956, 1042, 1061
PflFI	GACNNNGTC	2 cut(s)	293, 651
PkrI	GCNGC	6 cut(s)	97, 100, 192, 660, 819, 1270
PshAI	GACNNNNGTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	418, 707
PspGI	CCWGG	2 cut(s)	418, 707
PspN4I	GGNNCC	2 cut(s)	280, 973
PspPI	GGNCC	1 cut(s)	1219
PsuI	RGATCY	2 cut(s)	822, 1324
PsyI	GACNNNGTC	2 cut(s)	293, 651
RsaI	GTAC	4 cut(s)	341, 577, 1099, 1410
RsaNI	GTAC	4 cut(s)	340, 576, 1098, 1409
SaqAI	TTAA	3 cut(s)	399, 768, 1283
SatI	GCNGC	6 cut(s)	96, 99, 191, 659, 818, 1269
Sau3AI	GATC	3 cut(s)	586, 822, 1324
Sau96I	GGNCC	1 cut(s)	1219
ScrFI	CCNGG	2 cut(s)	420, 709
SduI	GDGCHC	3 cut(s)	976, 1348, 1376
SetI	ASST	9 cut(s)	249, 341, 490, 642, 679, 1038, 1270, 1283, 1414
SfaNI	GCATC	5 cut(s)	294, 541, 832, 1128, 1280
SfcI	CTRYAG	1 cut(s)	979
SfuI	TTCGAA	1 cut(s)	169
SinI	GGWCC	1 cut(s)	1219
SmlI	CTYRAG	4 cut(s)	539, 803, 1037, 1172
SmoI	CTYRAG	4 cut(s)	539, 803, 1037, 1172
Sse9I	AATT	7 cut(s)	134, 383, 506, 892, 963, 1101, 1129
SspI	AATATT	1 cut(s)	1055
SspMI	CTAG	1 cut(s)	1474
StyD4I	CCNGG	2 cut(s)	418, 707
TaaI	ACNGT	5 cut(s)	183, 344, 938, 1333, 1399
TaqI	TCGA	7 cut(s)	51, 169, 255, 288, 300, 1254, 1302
TasI	AATT	7 cut(s)	134, 383, 506, 892, 963, 1101, 1129
TatI	WGTACW	2 cut(s)	575, 1097
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	9 cut(s)	104, 153, 364, 473, 703, 902, 956, 1042, 1061
Tru1I	TTAA	3 cut(s)	399, 768, 1283
Tru9I	TTAA	3 cut(s)	399, 768, 1283
TscAI	CASTG	5 cut(s)	30, 349, 705, 779, 924
TseFI	GTSAC	2 cut(s)	73, 915
TseI	GCWGC	5 cut(s)	95, 190, 658, 817, 1268
Tsp45I	GTSAC	2 cut(s)	73, 915
TspDTI	ATGAA	6 cut(s)	253, 301, 519, 681, 1074, 1382
TspRI	CASTG	5 cut(s)	30, 349, 705, 779, 924
Tth111I	GACNNNGTC	2 cut(s)	293, 651
VpaK11BI	GGWCC	1 cut(s)	1219
XapI	RAATTY	5 cut(s)	134, 383, 506, 892, 1129
XspI	CTAG	1 cut(s)	1474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.