Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Reverse (-)

2611402 .. 2614862

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG033600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCCCGTCAGCCTCGAAGACGCCGAGTTCACCACCATCTCCGCCGCCAAGGCCGCCGCCGCCGCCCAATCAAAACCTAGGTTCAGCGAGCGGAGAGGAATCGCGCACCTCTTTCGAACACGAGGAAACTCGTCGCTGCCGAGCCACGGCGCCGAGTCCACTCTCCTCTTCGTCGTCGCCGTCCCCAACTACCTCTCCTTCAACGACTTCATCCGCTTCTGCGAGCCCCGCCTCGACCATGTCGCCGACCTCGTCTTCATCAGAAACGATGCCATGGAAGATCGGTACAGTGTTGTGATTAGGCTTATGGATGAGATGAAGGCAGATGGATTTTATGGCAGTTTCAATGGGAAGAAGTATTCGCCGGGCGAGGCTGAGGTGTGCCATATACTGTTTCTGGCTTCAGTGGACTACACAGATTCAGCTGAAATAGCCGGGACTCCTCCAGATTTATGTACCGAACTGCCTAGTTGCCCAATTGTTGACGAGTATAATCGACTTCTTGCAAGTCAGCTTGAGACTCAAAGACAGTACTATGAATCTCTACTGATGGAGGCCAAAAGTAAAGCTGAAAGTTCAAATTCAGAAGCATTGGAGAAGGCTGTAAATTTGAAGATACAGGATATTCAAAGTAAACTGGAGAAATCTCTTGAGGAAAAAAAGGCTGTTGCACACATTCACCAAACTCTCATCGAGGAGCAACAAACCTTGAGTGCAAAATATAAGGAAATTGAAGAGAGGGAATCTACAACAATGAGGTTAAGAGACGAGAAGATAGTTGATCTGGAAGAACAGATCAGAGATCTTACTGTCTATATTGGAGCCCAAAAAACACTGAATGACATGACGAACTCCGATGATATCAAAGGGGGATCACTCCTACCTGTACCGTCAAAGCAATCTTCGCCGGCCAAAAATAGAAGACAGACAAAATCTAGCAGAAGACGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

329

Amino Acids

37.13

Weight (kDa)

5.73

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRAP2	PF07576	63 - 157	4.3e-31	BRCA1-associated protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	140
AciI	CCGC	9 cut(s)	78, 81, 90, 93, 96, 99, 127, 250, 265
AclWI	GGATC	1 cut(s)	916
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	2 cut(s)	616, 643
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	2 cut(s)	57, 186
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	4 cut(s)	323, 493, 569, 924
AfiI	CCNNNNNNNGG	2 cut(s)	25, 182
AgsI	TTSAA	6 cut(s)	238, 382, 615, 649, 665, 770
AluBI	AGCT	3 cut(s)	461, 550, 605
AluI	AGCT	3 cut(s)	461, 550, 605
Alw26I	GTCTC	2 cut(s)	548, 795
AlwI	GGATC	1 cut(s)	916
AoxI	GGCC	3 cut(s)	87, 591, 945
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	616, 643
AspA2I	CCTAGG	1 cut(s)	113
AspLEI	GCGC	2 cut(s)	142, 188
AsuC2I	CCSGG	2 cut(s)	402, 472
AsuHPI	GGTGA	2 cut(s)	58, 707
AsuII	TTCGAA	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	264, 862
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	4 cut(s)	60, 283, 964, 985
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	3 cut(s)	80, 356, 580
BceAI	ACGGC	2 cut(s)	199, 200
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcnI	CCSGG	2 cut(s)	402, 472
BcoDI	GTCTC	2 cut(s)	548, 795
BfaI	CTAG	3 cut(s)	114, 504, 972
BfoI	RGCGCY	1 cut(s)	189
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	6 cut(s)	82, 91, 94, 97, 100, 174
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	2 cut(s)	402, 472
BmiI	GGNNCC	2 cut(s)	187, 859
BmrFI	CCNGG	2 cut(s)	402, 472
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	4 cut(s)	60, 283, 964, 985
BpmI	CTGGAG	2 cut(s)	465, 695
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	3 cut(s)	572, 707, 766
BpuMI	CCSGG	2 cut(s)	402, 472
BsaHI	GRCGYC	2 cut(s)	57, 186
BsaJI	CCNNGG	4 cut(s)	84, 113, 181, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 182
Bse118I	RCCGGY	1 cut(s)	943
Bse1I	ACTGG	1 cut(s)	678
BseDI	CCNNGG	4 cut(s)	84, 113, 181, 309
BseGI	GGATG	2 cut(s)	246, 352
BseLI	CCNNNNNNNGG	2 cut(s)	25, 182
BseMII	CTCAG	2 cut(s)	36, 402
BseNI	ACTGG	1 cut(s)	678
BseRI	GAGGAG	3 cut(s)	191, 468, 746
BseXI	GCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	89, 593, 947
BshNI	GGYRCC	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	401, 471, 944
BslFI	GGGAC	2 cut(s)	203, 487
BslI	CCNNNNNNNGG	2 cut(s)	25, 182
BsmAI	GTCTC	2 cut(s)	548, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	2 cut(s)	203, 487
BsnI	GGCC	3 cut(s)	89, 593, 947
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	264, 862
Bsp143I	GATC	5 cut(s)	316, 817, 831, 838, 908
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	9 cut(s)	78, 81, 90, 93, 96, 99, 127, 250, 265
BspANI	GGCC	3 cut(s)	89, 593, 947
BspCNI	CTCAG	2 cut(s)	35, 403
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	187, 859
BspPI	GGATC	1 cut(s)	916
BspT104I	TTCGAA	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	943
BsrI	ACTGG	1 cut(s)	678
BssAI	RCCGGY	1 cut(s)	943
BssECI	CCNNGG	4 cut(s)	84, 113, 181, 309
BssMI	GATC	5 cut(s)	316, 817, 831, 838, 908
BssNI	GRCGYC	2 cut(s)	57, 186
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	3 cut(s)	84, 113, 309
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	5 cut(s)	326, 429, 567, 847, 927
Bst6I	CTCTTC	2 cut(s)	209, 765
BstACI	GRCGYC	2 cut(s)	57, 186
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	3 cut(s)	125, 260, 945
BstDEI	CTNAG	2 cut(s)	22, 411
BstDSI	CCRYGG	2 cut(s)	181, 309
BstF5I	GGATG	2 cut(s)	246, 352
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	142, 188
BstKTI	GATC	5 cut(s)	319, 820, 834, 841, 911
BstMAI	GTCTC	2 cut(s)	548, 795
BstMBI	GATC	5 cut(s)	316, 817, 831, 838, 908
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 89, 95, 98, 264, 467, 940
BstSCI	CCNGG	2 cut(s)	400, 470
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	4 cut(s)	60, 283, 964, 985
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BsuRI	GGCC	3 cut(s)	89, 593, 947
BtgI	CCRYGG	2 cut(s)	181, 309
BtsCI	GGATG	2 cut(s)	246, 352
BtsIMutI	CAGTG	4 cut(s)	30, 331, 447, 869
Cac8I	GCNNGC	3 cut(s)	125, 260, 945
CfoI	GCGC	2 cut(s)	142, 188
Cfr10I	RCCGGY	1 cut(s)	943
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	4 cut(s)	322, 492, 568, 923
CviAII	CATG	3 cut(s)	275, 310, 880
CviQI	GTAC	4 cut(s)	322, 492, 568, 923
DdeI	CTNAG	2 cut(s)	22, 411
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	5 cut(s)	318, 819, 833, 840, 910
DpnII	GATC	5 cut(s)	316, 817, 831, 838, 908
DraIII	CACNNNGTG	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	2 cut(s)	209, 765
EarI	CTCTTC	2 cut(s)	209, 765
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	3 cut(s)	84, 113, 309
Eco24I	GRGCYC	2 cut(s)	264, 862
Eco32I	GATATC	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	898
EcoT14I	CCWWGG	3 cut(s)	84, 113, 309
EcoT38I	GRGCYC	2 cut(s)	264, 862
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	3 cut(s)	84, 113, 309
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	3 cut(s)	278, 313, 883
FaqI	GGGAC	2 cut(s)	203, 487
FatI	CATG	3 cut(s)	274, 309, 879
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
FokI	GGATG	2 cut(s)	233, 359
FriOI	GRGCYC	2 cut(s)	264, 862
Fsp4HI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
FspBI	CTAG	3 cut(s)	114, 504, 972
GlaI	GCGC	2 cut(s)	141, 187
GluI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
GsuI	CTGGAG	2 cut(s)	465, 695
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	89, 593, 947
HapII	CCGG	3 cut(s)	401, 471, 944
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	2 cut(s)	142, 188
Hin1I	GRCGYC	2 cut(s)	57, 186
Hin1II	CATG	3 cut(s)	278, 313, 883
Hin6I	GCGC	2 cut(s)	140, 186
HinP1I	GCGC	2 cut(s)	140, 186
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	8 cut(s)	15, 135, 191, 455, 475, 556, 575, 779
HpaII	CCGG	3 cut(s)	401, 471, 944
HphI	GGTGA	2 cut(s)	58, 707
Hpy166II	GTNNAC	7 cut(s)	19, 28, 66, 195, 445, 520, 671
Hpy188I	TCNGA	5 cut(s)	14, 299, 622, 836, 892
Hpy188III	TCNNGA	3 cut(s)	482, 686, 821
Hpy8I	GTNNAC	7 cut(s)	19, 28, 66, 195, 445, 520, 671
Hpy99I	CGWCG	3 cut(s)	172, 212, 215
HpyAV	CCTTC	3 cut(s)	244, 349, 628
HpyCH4III	ACNGT	5 cut(s)	326, 429, 567, 847, 927
HpyCH4V	TGCA	3 cut(s)	542, 707, 752
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 89, 95, 98, 264, 467, 940
HpyF3I	CTNAG	2 cut(s)	22, 411
Hsp92I	GRCGYC	2 cut(s)	57, 186
Hsp92II	CATG	3 cut(s)	278, 313, 883
HspAI	GCGC	2 cut(s)	140, 186
KasI	GGCGCC	1 cut(s)	185
KroI	GCCGGC	1 cut(s)	943
KroNI	GCCGGC	1 cut(s)	945
Kzo9I	GATC	5 cut(s)	316, 817, 831, 838, 908
LmnI	GCTCC	2 cut(s)	733, 857
LpnPI	CCDG	9 cut(s)	414, 419, 484, 495, 641, 659, 806, 933, 957
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	3 cut(s)	114, 504, 972
MalI	GATC	5 cut(s)	318, 819, 833, 840, 910
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	5 cut(s)	316, 817, 831, 838, 908
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	2 cut(s)	264, 862
MluCI	AATT	5 cut(s)	513, 616, 643, 765, 985
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	4 cut(s)	24, 200, 469, 550
MroNI	GCCGGC	1 cut(s)	943
MseI	TTAA	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	3 cut(s)	401, 471, 944
MspR9I	CCNGG	2 cut(s)	402, 472
MunI	CAATTG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	7 cut(s)	86, 89, 95, 98, 264, 467, 940
NaeI	GCCGGC	1 cut(s)	945
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	2 cut(s)	402, 472
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	5 cut(s)	316, 817, 831, 838, 908
NgoMIV	GCCGGC	1 cut(s)	943
NlaIII	CATG	3 cut(s)	278, 313, 883
NlaIV	GGNNCC	2 cut(s)	187, 859
NmeAIII	GCCGAG	3 cut(s)	85, 201, 214
NspV	TTCGAA	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 173, 213, 285
PdiI	GCCGGC	1 cut(s)	945
PfeI	GAWTC	4 cut(s)	135, 455, 575, 779
PflFI	GACNNNGTC	2 cut(s)	275, 287
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	6 cut(s)	82, 91, 94, 97, 100, 174
PleI	GAGTC	4 cut(s)	23, 199, 469, 550
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	4 cut(s)	23, 199, 469, 550
PspN4I	GGNNCC	2 cut(s)	187, 859
PsuI	RGATCY	1 cut(s)	838
PsyI	GACNNNGTC	2 cut(s)	275, 287
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	4 cut(s)	323, 493, 569, 924
RsaNI	GTAC	4 cut(s)	322, 492, 568, 923
SaqAI	TTAA	1 cut(s)	797
SatI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
Sau3AI	GATC	5 cut(s)	316, 817, 831, 838, 908
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	4 cut(s)	24, 200, 469, 550
ScrFI	CCNGG	2 cut(s)	402, 472
SduI	GDGCHC	2 cut(s)	264, 862
SfaNI	GCATC	1 cut(s)	295
SfoI	GGCGCC	1 cut(s)	187
SfuI	TTCGAA	1 cut(s)	151
SmlI	CTYRAG	3 cut(s)	551, 686, 745
SmoI	CTYRAG	3 cut(s)	551, 686, 745
Sse9I	AATT	5 cut(s)	513, 616, 643, 765, 985
SsiI	CCGC	9 cut(s)	78, 81, 90, 93, 96, 99, 127, 250, 265
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	3 cut(s)	114, 504, 972
StyD4I	CCNGG	2 cut(s)	400, 470
StyI	CCWWGG	3 cut(s)	84, 113, 309
TaaI	ACNGT	5 cut(s)	326, 429, 567, 847, 927
TaqI	TCGA	5 cut(s)	51, 151, 270, 532, 729
TasI	AATT	5 cut(s)	513, 616, 643, 765, 985
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	5 cut(s)	83, 92, 95, 98, 101
TfiI	GAWTC	4 cut(s)	135, 455, 575, 779
Tru1I	TTAA	1 cut(s)	797
Tru9I	TTAA	1 cut(s)	797
TscAI	CASTG	4 cut(s)	30, 331, 447, 876
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	235, 283, 368, 588
TspRI	CASTG	4 cut(s)	30, 331, 447, 876
Tth111I	GACNNNGTC	2 cut(s)	275, 287
Van91I	CCANNNNNTGG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	616, 643
XmaJI	CCTAGG	1 cut(s)	113
XspI	CTAG	3 cut(s)	114, 504, 972
ZrmI	AGTACT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.