Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012543

Physical Location & Seq

Genomic Coordinates Reverse (-)

98079 .. 100368

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACGAATTCAGAGAGCCCATTGATTGTAGCTTTTGGAGAGATGCTCATCGACTTTGTGCCCGACACTGCAGGAGTTTCGCTGGCTGAGTCCACGGGCTTCCTCAAGGCCCCCGGTGGTGCACCTGCCAATGTGGCTTGTGCCATCACCAAGCTTGGTGGCAAATCGGCTTTCGTTGGAAAGGTTGGAGATGACGAGTTCGGGCACATGCTGATCAACATATTGAAGAAGAATGGGGTGAACGCTGAGGGAGTGTGCGTGGATACGCATGCTAGGACGGCGTTGGCTTTTGTGACCTTAAGGAAGGACGGTGAAAGAGAGTTCATGTTCTACAGGAACCCTAGTGCTGACATGTTGCTAAAGGATTCAGAGCTGAACATGCCTCTTATTAAGCAAGCTAAGATATTCCACTACGGATCCATTAGCCTCATCTCCGAGCCATGCAGATCGGCTCATATGGCAGCCATGAAAGCCGCTAAGGATGCCGGTATTATGCTTTCCTATGATCCCAATGTTAGGCTGCCTCTCTGGCCCTCTGCTGATGCTGCTAGGGAGGGGATCAAGAGCATATGGAATCAGGCTGATTTCATCAAGGTGAGCGACGACGAGGTGCAATTCCTGACGCAAGGAGATGCAGAAAAAGATGATGTGGTTCTGTCCCTATGGCATGACAACCTCAAACTGCTTGTGGTCACTGATGGTGAGAAGGGCTGCAGATATTACACTAAGAAATTTAAAGGAAAGGTGACTGGCTTCTCTGTTAAAGCTGTCGACACAACTGGTGCTGGTGATGCATTTGTTGGCTCATTTTTGCTTTCCATGGCCAAAGATATGTCCATCTTTGAGGATGAAACAAAATTGAAGGAGGCTCTGTCTTTTTCAAATGCTTGTGGAGCAATCTGTACTACTCAGAAGGGTGCAATTCCAGCTCTTCCAACCCAGTCTGCTGCTCTTGAACTCATTTCCAAGTCCAAATCCAAGTCGATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

331

Amino Acids

35.5

Weight (kDa)

6.01

Isoelectric Point (pI)

22.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10260
fragaria_vesca	FvH4_2g00080
malus_domestica	MD17G1267100.v1.1
prunus_persica	Prupe.8G000700_v2.0.a1
pyrus_communis	pycom17g26620
rosa_chinensis	RchiOBHm_Chr6g0249341
rosa_laevigata	RLG00000015590
rosa_multiflora	Rmu_co8334337.1_g000001 Rmu_sc0000278.1_g000022 Rmu_sc0006234.1_g000016
rosa_roxburghii	Rroxscaffold_7G00217830
rosa_rugosa	Rorug05G0490600.1 Rorug05G0490700.1 Rorug05G0490800.1
rosa_samantha	Rh6AG001300 Rh6BG009000 Rh6CG000400 Rh6DG000300
rosa_wichuraiana	Rw6G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	771
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	4 cut(s)	411, 424, 500, 566
AcoI	YGGCCR	1 cut(s)	822
AcsI	RAATTY	2 cut(s)	7, 731
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	1 cut(s)	516
AflII	CTTAAG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	4 cut(s)	226, 862, 882, 956
AluBI	AGCT	6 cut(s)	32, 154, 373, 398, 767, 929
AluI	AGCT	6 cut(s)	32, 154, 373, 398, 767, 929
Alw21I	GWGCWC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	411, 424, 500, 566
AoxI	GGCC	3 cut(s)	108, 530, 822
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	5 cut(s)	461, 520, 545, 711, 947
ApoI	RAATTY	2 cut(s)	7, 731
AspS9I	GGNCC	2 cut(s)	109, 531
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	7 cut(s)	139, 250, 323, 607, 713, 757, 800
BaeGI	GKGCMC	3 cut(s)	63, 124, 207
BalI	TGGCCA	1 cut(s)	824
BamHI	GGATCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	5 cut(s)	473, 507, 532, 698, 934
BccI	CCATC	3 cut(s)	152, 692, 845
BceAI	ACGGC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciVI	GTATCC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	3 cut(s)	273, 342, 549
BfmI	CTRYAG	3 cut(s)	69, 331, 712
BfrI	CTTAAG	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	256
BglI	GCCNNNNNGGC	2 cut(s)	134, 529
BisI	GCNGC	6 cut(s)	462, 474, 521, 546, 712, 948
BlsI	GCNGC	6 cut(s)	463, 475, 522, 547, 713, 949
Bme1390I	CCNGG	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	109, 531
BmiI	GGNNCC	3 cut(s)	111, 338, 418
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	5 cut(s)	33, 472, 532, 622, 781
BmuI	ACTGGG	1 cut(s)	934
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
Bpu10I	CCTNAGC	2 cut(s)	246, 477
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	93, 112, 819
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 857, 887
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	754, 784, 940
Bse8I	GATNNNNATC	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	93, 112, 819
BseGI	GGATG	2 cut(s)	487, 853
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMII	CTCAG	3 cut(s)	78, 237, 923
BseNI	ACTGG	3 cut(s)	754, 784, 940
BseSI	GKGCMC	3 cut(s)	63, 124, 207
BseXI	GCAGC	5 cut(s)	473, 507, 532, 698, 934
BshFI	GGCC	3 cut(s)	110, 532, 824
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	114, 486
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	643
BsnI	GGCC	3 cut(s)	110, 532, 824
Bsp1286I	GDGCHC	4 cut(s)	20, 63, 124, 207
Bsp143I	GATC	5 cut(s)	213, 416, 446, 505, 558
Bsp19I	CCATGG	1 cut(s)	819
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	3 cut(s)	110, 532, 824
BspCNI	CTCAG	3 cut(s)	79, 238, 922
BspLI	GGNNCC	3 cut(s)	111, 338, 418
BspMAI	CTGCAG	2 cut(s)	73, 716
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	4 cut(s)	411, 424, 500, 566
BspQI	GCTCTTC	1 cut(s)	936
BspTI	CTTAAG	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	3 cut(s)	754, 784, 940
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	93, 112, 819
BssMI	GATC	5 cut(s)	213, 416, 446, 505, 558
BssT1I	CCWWGG	1 cut(s)	819
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	936
BstAFI	CTTAAG	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	84, 270, 396
BstDEI	CTNAG	6 cut(s)	87, 246, 399, 477, 726, 909
BstDSI	CCRYGG	2 cut(s)	93, 819
BstF5I	GGATG	2 cut(s)	487, 853
BstKTI	GATC	5 cut(s)	216, 419, 449, 508, 561
BstMBI	GATC	5 cut(s)	213, 416, 446, 505, 558
BstNSI	RCATGY	4 cut(s)	211, 272, 355, 382
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	3 cut(s)	69, 331, 712
BstSLI	GKGCMC	3 cut(s)	63, 124, 207
BstV1I	GCAGC	5 cut(s)	473, 507, 532, 698, 934
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	110, 532, 824
BtgI	CCRYGG	2 cut(s)	93, 819
BtsCI	GGATG	2 cut(s)	487, 853
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 693
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	84, 270, 396
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	109, 531
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	903
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	9 cut(s)	208, 269, 325, 352, 379, 441, 466, 668, 820
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	6 cut(s)	87, 246, 399, 477, 726, 909
DpnI	GATC	5 cut(s)	215, 418, 448, 507, 560
DpnII	GATC	5 cut(s)	213, 416, 446, 505, 558
DraI	TTTAAA	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Eco130I	CCWWGG	1 cut(s)	819
Eco24I	GRGCYC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	819
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	9 cut(s)	211, 272, 328, 355, 382, 444, 469, 671, 823
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	9 cut(s)	207, 268, 324, 351, 378, 440, 465, 667, 819
FauNDI	CATATG	2 cut(s)	456, 569
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	6 cut(s)	462, 474, 521, 546, 712, 948
FokI	GGATG	2 cut(s)	494, 860
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	6 cut(s)	462, 474, 521, 546, 712, 948
FspBI	CTAG	3 cut(s)	273, 342, 549
GluI	GCNGC	6 cut(s)	462, 474, 521, 546, 712, 948
HaeIII	GGCC	3 cut(s)	110, 532, 824
HapII	CCGG	2 cut(s)	114, 486
HgaI	GACGC	1 cut(s)	631
Hin1II	CATG	9 cut(s)	211, 272, 328, 355, 382, 444, 469, 671, 823
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	3 cut(s)	89, 365, 574
HpaII	CCGG	2 cut(s)	114, 486
HphI	GGTGA	7 cut(s)	139, 250, 323, 607, 713, 757, 800
Hpy166II	GTNNAC	4 cut(s)	93, 122, 241, 772
Hpy188I	TCNGA	4 cut(s)	13, 370, 436, 912
Hpy188III	TCNNGA	3 cut(s)	562, 619, 953
Hpy8I	GTNNAC	4 cut(s)	93, 122, 241, 772
Hpy99I	CGWCG	2 cut(s)	605, 608
HpyAV	CCTTC	4 cut(s)	298, 700, 856, 907
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	8 cut(s)	71, 122, 444, 613, 635, 714, 794, 920
HpyF3I	CTNAG	6 cut(s)	87, 246, 399, 477, 726, 909
Hsp92II	CATG	9 cut(s)	211, 272, 328, 355, 382, 444, 469, 671, 823
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	213, 416, 446, 505, 558
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	5 cut(s)	473, 507, 532, 698, 934
LweI	GCATC	5 cut(s)	33, 472, 532, 622, 781
MaeI	CTAG	3 cut(s)	273, 342, 549
MaeIII	GTNAC	3 cut(s)	292, 691, 745
MalI	GATC	5 cut(s)	215, 418, 448, 507, 560
MboI	GATC	5 cut(s)	213, 416, 446, 505, 558
MboII	GAAGA	3 cut(s)	238, 241, 923
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	4 cut(s)	20, 63, 124, 207
MlsI	TGGCCA	1 cut(s)	824
MluCI	AATT	5 cut(s)	7, 614, 731, 857, 921
MluNI	TGGCCA	1 cut(s)	824
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	3 cut(s)	157, 166, 959
Mox20I	TGGCCA	1 cut(s)	824
Mph1103I	ATGCAT	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	824
MseI	TTAA	5 cut(s)	299, 390, 735, 762, 991
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	824
MspCI	CTTAAG	1 cut(s)	298
MspI	CCGG	2 cut(s)	114, 486
MspR9I	CCNGG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	819
NdeI	CATATG	2 cut(s)	456, 569
NdeII	GATC	5 cut(s)	213, 416, 446, 505, 558
NlaIII	CATG	9 cut(s)	211, 272, 328, 355, 382, 444, 469, 671, 823
NlaIV	GGNNCC	3 cut(s)	111, 338, 418
NmuCI	GTSAC	3 cut(s)	292, 691, 745
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	4 cut(s)	211, 272, 355, 382
PaeI	GCATGC	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	133
PciI	ACATGT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	936
PfeI	GAWTC	2 cut(s)	365, 574
PkrI	GCNGC	6 cut(s)	463, 475, 522, 547, 713, 949
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	111, 338, 418
PspPI	GGNCC	2 cut(s)	109, 531
PstI	CTGCAG	2 cut(s)	73, 716
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
RseI	CAYNNNNRTG	1 cut(s)	593
SalI	GTCGAC	1 cut(s)	770
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	5 cut(s)	299, 390, 735, 762, 991
SatI	GCNGC	6 cut(s)	462, 474, 521, 546, 712, 948
Sau3AI	GATC	5 cut(s)	213, 416, 446, 505, 558
Sau96I	GGNCC	2 cut(s)	109, 531
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	4 cut(s)	20, 63, 124, 207
SfaNI	GCATC	5 cut(s)	33, 472, 532, 622, 781
SfcI	CTRYAG	3 cut(s)	69, 331, 712
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	104, 298
SmoI	CTYRAG	2 cut(s)	104, 298
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	5 cut(s)	7, 614, 731, 857, 921
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	3 cut(s)	273, 342, 549
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	51, 771, 983
TasI	AATT	5 cut(s)	7, 614, 731, 857, 921
TatI	WGTACW	1 cut(s)	902
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	365, 574
Tru1I	TTAA	5 cut(s)	299, 390, 735, 762, 991
Tru9I	TTAA	5 cut(s)	299, 390, 735, 762, 991
TscAI	CASTG	2 cut(s)	73, 700
TseFI	GTSAC	3 cut(s)	292, 691, 745
TseI	GCWGC	5 cut(s)	461, 520, 545, 711, 947
Tsp45I	GTSAC	3 cut(s)	292, 691, 745
TspDTI	ATGAA	4 cut(s)	313, 482, 577, 864
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	73, 700
Vha464I	CTTAAG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	120
XapI	RAATTY	2 cut(s)	7, 731
XceI	RCATGY	4 cut(s)	211, 272, 355, 382
XmiI	GTMKAC	1 cut(s)	771
XspI	CTAG	3 cut(s)	273, 342, 549
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.