Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012543

Physical Location & Seq

Genomic Coordinates Reverse (-)

329615 .. 331251

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG001300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGGATTCACTGATTGTTGCTTTCGGGGAGATGTTGATCGACTTTGTCCCCGACACCGCTGGTGTGTCGTTGGCAGAGTCCACCGGCTTTCTCAAAGCCCCCGGTGGTGCACCTGCCAATGTGGCTTGTGCTATCAGTAAGCTTGGTGGAAAAGCGGCATTCGTCGGAAAGGTGGGAGATGACGAGTTTGGACACATGCTGATCAACATACTGAAGAAGAATGGAGTGAACACTGAGGGAGTGTGCGTGGATGCGCATGCTCGAACCGCACTGGCGTTTGTGACCTTGAGAAAGGACGGTGAGAGGGAGTTCATGTTCTACAGGAACCCTAGTGCTGACATGTTGCTCAAGGATTCAGAGCTGAACATGGGTCTGATTAAGCAGGCCAAGATATTCCATTATGGATCCATAAGCCTAATATCTGAGCCATGCAAATCGGCTCATATGGCGGCCATGAAAGCCGCCAAGGATGCCGGTATACTGCTTTCTTATGATCCCAACGTCAGGTTGCCCCTCTGGCCTTCTGCTGATGCTGCTAGAGATGGCATCAAGAGCATCTGGAATCAGGCTGATTTCATTAAGGTGAGCGATGATGAGGTGCAATTCCTAACTCAAGGAGATCCTGACAAAGAAGAAGTGGTTCTCTCCCTCTGGCACGATAATCTCAAACTGCTTGTTGTCACTGATGGTGAGAAGGGTTGCAGATATTTTACTAAGAAATTCAAAGGAAATGTGACTGGTTTCTCGGTTAAAGCTGTTGACACAACTGGTGCGGGTGATGCTTTTGTTGGTTCATTTCTTCTTTCCATGGCTAAAGATATGTCCATCTTTGAGGATGAAGCAAAATTGAAGGAGGCTCTGTCTTTTGCAAATGCTTGTGGAGCTATCTGTACTACTCAGAAGGGTGCAATTCCTGCTCTTCCAGCCGTATCCGATGCTCTCGAACTCATTAAGTCAAAAGCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

323

Amino Acids

34.51

Weight (kDa)

5.64

Isoelectric Point (pI)

19.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	5 - 309	1.5e-76	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10260
fragaria_vesca	FvH4_2g00080
malus_domestica	MD17G1267100.v1.1
prunus_persica	Prupe.8G000700_v2.0.a1
pyrus_communis	pycom17g26620
rosa_chinensis	RchiOBHm_Chr6g0249341
rosa_laevigata	RLG00000015590
rosa_multiflora	Rmu_co8334337.1_g000001 Rmu_sc0000278.1_g000022 Rmu_sc0006234.1_g000016
rosa_roxburghii	Rroxscaffold_7G00217830
rosa_rugosa	Rorug05G0490600.1 Rorug05G0490700.1 Rorug05G0490800.1
rosa_samantha	Rh6AG001300 Rh6BG009000 Rh6CG000400 Rh6DG000300
rosa_wichuraiana	Rw6G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	124
Acc16I	TGCGCA	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	481
AciI	CCGC	7 cut(s)	5, 60, 158, 270, 452, 465, 776
AclWI	GGATC	4 cut(s)	402, 415, 491, 617
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	895
AfiI	CCNNNNNNNGG	1 cut(s)	507
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	727, 853
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	145, 364, 758, 887
AluI	AGCT	4 cut(s)	145, 364, 758, 887
Alw21I	GWGCWC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	4 cut(s)	402, 415, 491, 617
AoxI	GGCC	3 cut(s)	387, 453, 521
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	722
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	4 cut(s)	314, 598, 704, 791
BaeGI	GKGCMC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	3 cut(s)	539, 683, 836
BceAI	ACGGC	1 cut(s)	914
BciVI	GTATCC	1 cut(s)	943
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	2 cut(s)	333, 540
BfmI	CTRYAG	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	943
BglI	GCCNNNNNGGC	2 cut(s)	125, 520
BisI	GCNGC	4 cut(s)	159, 453, 465, 537
BlsI	GCNGC	4 cut(s)	160, 454, 466, 538
Bme1390I	CCNGG	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	329, 409
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	7 cut(s)	244, 463, 523, 558, 567, 772, 928
BpuEI	CTTGAG	3 cut(s)	310, 335, 600
BpuMI	CCSGG	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	103, 468, 810
BsaXI	ACNNNNNCTCC	6 cut(s)	234, 264, 302, 332, 848, 878
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse118I	RCCGGY	2 cut(s)	86, 476
Bse1I	ACTGG	3 cut(s)	279, 745, 775
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	103, 468, 810
BseGI	GGATG	3 cut(s)	259, 478, 844
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	228, 417, 914
BseNI	ACTGG	3 cut(s)	279, 745, 775
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	523
BshFI	GGCC	3 cut(s)	389, 455, 523
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	87, 105, 477
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	389, 455, 523
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	5 cut(s)	39, 204, 407, 496, 622
Bsp19I	CCATGG	1 cut(s)	810
BspACI	CCGC	7 cut(s)	5, 60, 158, 270, 452, 465, 776
BspANI	GGCC	3 cut(s)	389, 455, 523
BspCNI	CTCAG	3 cut(s)	229, 418, 913
BspLI	GGNNCC	2 cut(s)	329, 409
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	4 cut(s)	402, 415, 491, 617
BspQI	GCTCTTC	1 cut(s)	927
BsrFI	RCCGGY	2 cut(s)	86, 476
BsrI	ACTGG	3 cut(s)	279, 745, 775
BssAI	RCCGGY	2 cut(s)	86, 476
BssECI	CCNNGG	3 cut(s)	103, 468, 810
BssMI	GATC	5 cut(s)	39, 204, 407, 496, 622
BssNAI	GTATAC	1 cut(s)	482
BssT1I	CCWWGG	2 cut(s)	468, 810
Bst1107I	GTATAC	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	927
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	2 cut(s)	261, 387
BstDEI	CTNAG	4 cut(s)	237, 426, 717, 900
BstDSI	CCRYGG	1 cut(s)	810
BstF5I	GGATG	3 cut(s)	259, 478, 844
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	5 cut(s)	42, 207, 410, 499, 625
BstMBI	GATC	5 cut(s)	39, 204, 407, 496, 622
BstNSI	RCATGY	3 cut(s)	202, 263, 346
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	523
BstX2I	RGATCY	2 cut(s)	407, 622
BstYI	RGATCY	2 cut(s)	407, 622
BstZ17I	GTATAC	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	3 cut(s)	389, 455, 523
BtgI	CCRYGG	1 cut(s)	810
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	3 cut(s)	259, 478, 844
BtsIMutI	CAGTG	4 cut(s)	11, 234, 272, 684
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	261, 387
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	2 cut(s)	86, 476
Csp6I	GTAC	1 cut(s)	894
CviAII	CATG	8 cut(s)	199, 260, 316, 343, 370, 432, 457, 811
CviQI	GTAC	1 cut(s)	894
DdeI	CTNAG	4 cut(s)	237, 426, 717, 900
DpnI	GATC	5 cut(s)	41, 206, 409, 498, 624
DpnII	GATC	5 cut(s)	39, 204, 407, 496, 622
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	927
EarI	CTCTTC	1 cut(s)	927
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	468, 810
Eco57I	CTGAAG	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	468, 810
ErhI	CCWWGG	2 cut(s)	468, 810
FaeI	CATG	8 cut(s)	202, 263, 319, 346, 373, 435, 460, 814
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	8 cut(s)	198, 259, 315, 342, 369, 431, 456, 810
FauI	CCCGC	1 cut(s)	769
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	159, 453, 465, 537
FokI	GGATG	3 cut(s)	266, 485, 851
Fsp4HI	GCNGC	4 cut(s)	159, 453, 465, 537
FspAI	RTGCGCAY	1 cut(s)	258
FspBI	CTAG	2 cut(s)	333, 540
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	4 cut(s)	159, 453, 465, 537
HaeIII	GGCC	3 cut(s)	389, 455, 523
HapII	CCGG	3 cut(s)	87, 105, 477
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	8 cut(s)	202, 263, 319, 346, 373, 435, 460, 814
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	4 cut(s)	8, 80, 356, 565
HpaII	CCGG	3 cut(s)	87, 105, 477
HphI	GGTGA	4 cut(s)	314, 598, 704, 791
Hpy166II	GTNNAC	5 cut(s)	84, 113, 232, 482, 763
Hpy188I	TCNGA	6 cut(s)	170, 361, 378, 427, 903, 937
Hpy188III	TCNNGA	4 cut(s)	553, 562, 626, 944
Hpy8I	GTNNAC	5 cut(s)	84, 113, 232, 482, 763
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	4 cut(s)	534, 691, 847, 898
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	6 cut(s)	113, 435, 604, 705, 872, 911
HpyF3I	CTNAG	4 cut(s)	237, 426, 717, 900
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	8 cut(s)	202, 263, 319, 346, 373, 435, 460, 814
HspAI	GCGC	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	5 cut(s)	39, 204, 407, 496, 622
LguI	GCTCTTC	1 cut(s)	927
LmnI	GCTCC	1 cut(s)	884
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	7 cut(s)	244, 463, 523, 558, 567, 772, 928
MaeI	CTAG	2 cut(s)	333, 540
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	3 cut(s)	283, 682, 736
MalI	GATC	5 cut(s)	41, 206, 409, 498, 624
MboI	GATC	5 cut(s)	39, 204, 407, 496, 622
MboII	GAAGA	5 cut(s)	229, 232, 647, 794, 914
MflI	RGATCY	2 cut(s)	407, 622
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	4 cut(s)	605, 722, 848, 912
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	7 cut(s)	232, 300, 527, 592, 662, 829, 850
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	4 cut(s)	381, 582, 753, 954
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	87, 105, 477
MspR9I	CCNGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	810
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	5 cut(s)	39, 204, 407, 496, 622
NlaIII	CATG	8 cut(s)	202, 263, 319, 346, 373, 435, 460, 814
NlaIV	GGNNCC	2 cut(s)	329, 409
NmuCI	GTSAC	3 cut(s)	283, 682, 736
NsbI	TGCGCA	1 cut(s)	258
NspI	RCATGY	3 cut(s)	202, 263, 346
PaeI	GCATGC	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	124
PciI	ACATGT	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	927
PctI	GAATGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	8, 356, 565
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	160, 454, 466, 538
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PscI	ACATGT	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	329, 409
PsuI	RGATCY	2 cut(s)	407, 622
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	895
RsaNI	GTAC	1 cut(s)	894
RseI	CAYNNNNRTG	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	381, 582, 753, 954
SatI	GCNGC	4 cut(s)	159, 453, 465, 537
Sau3AI	GATC	5 cut(s)	39, 204, 407, 496, 622
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	115
SfaNI	GCATC	7 cut(s)	244, 463, 523, 558, 567, 772, 928
SfcI	CTRYAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	289, 350, 615
SmoI	CTYRAG	3 cut(s)	289, 350, 615
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	4 cut(s)	605, 722, 848, 912
SsiI	CCGC	7 cut(s)	5, 60, 158, 270, 452, 465, 776
SspMI	CTAG	2 cut(s)	333, 540
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	468, 810
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	42, 265, 945
TasI	AATT	4 cut(s)	605, 722, 848, 912
TatI	WGTACW	1 cut(s)	893
TauI	GCSGC	3 cut(s)	161, 455, 467
TfiI	GAWTC	3 cut(s)	8, 356, 565
Tru1I	TTAA	4 cut(s)	381, 582, 753, 954
Tru9I	TTAA	4 cut(s)	381, 582, 753, 954
TscAI	CASTG	4 cut(s)	18, 241, 279, 691
TseFI	GTSAC	3 cut(s)	283, 682, 736
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	3 cut(s)	283, 682, 736
TspDTI	ATGAA	5 cut(s)	304, 473, 568, 786, 855
TspRI	CASTG	4 cut(s)	18, 241, 279, 691
Tth111I	GACNNNGTC	1 cut(s)	47
VneI	GTGCAC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	3 cut(s)	202, 263, 346
XmiI	GTMKAC	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	2 cut(s)	333, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.