Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006234.1

Orthogroup ID

OG0012543

Physical Location & Seq

Genomic Coordinates Forward (+)

51647 .. 52976

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006234.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgctgatcaacatactgaagaagaatggagtgaacactgagggagtgtgcgtggatgcgcatgctcgaaccgcactggcgtttgtgaccttgagaaaggacggtgagagggagttcatgttctacaggaaccctagtgctgacatgttgctcaaggattcagagctgaacatgggtctgattaagcaggccaagatattccattatggatccataagcctaatatctgagccatgcaaatcggctcatatggcggccatgaaagccgccaaggatgccggtatactgctttcttatgatcccaacgtcaggttgcccctctggccttctgctgatgctgctagagatggcatcaagagcatctggaatcaggctgatttcattaaggtgagcgatgatgaggtgcaattcctaactcaaggagatcctgacaaagaagaagtggttctctccctctggcacgataatctcaaactgcttgttgtcactgatggtgagaagggttgcagatattttactaagaaattcaaaggaaatgtgactggtttctcggttaaagctgttgacacaactggtgcgggtgatgcttttgttggttcatttcttctttccatggctaaagatatgtccatctttgaggatgaagcaaaattgaaggaggctctgtcttttgcaaatgcttgtggagctatctgtactactcagaagggtgcaattcctgctcttccagccgtatccgatgctctcgaactcattaagtcaaaagccaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006000 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008865 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019318 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00051 ko00500 ko00520 ko01100 map00051 map00500 map00520 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

257

Amino Acids

27.99

Weight (kDa)

6.44

Isoelectric Point (pI)

19.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10260
fragaria_vesca	FvH4_2g00080
malus_domestica	MD17G1267100.v1.1
prunus_persica	Prupe.8G000700_v2.0.a1
pyrus_communis	pycom17g26620
rosa_chinensis	RchiOBHm_Chr6g0249341
rosa_laevigata	RLG00000015590
rosa_multiflora	Rmu_co8334337.1_g000001 Rmu_sc0000278.1_g000022 Rmu_sc0006234.1_g000016
rosa_roxburghii	Rroxscaffold_7G00217830
rosa_rugosa	Rorug05G0490600.1 Rorug05G0490700.1 Rorug05G0490800.1
rosa_samantha	Rh6AG001300 Rh6BG009000 Rh6CG000400 Rh6DG000300
rosa_wichuraiana	Rw6G000190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	4 cut(s)	72, 254, 267, 578
AclWI	GGATC	4 cut(s)	204, 217, 293, 419
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	529, 655
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	166, 560, 689
AluI	AGCT	3 cut(s)	166, 560, 689
AlwI	GGATC	4 cut(s)	204, 217, 293, 419
AoxI	GGCC	3 cut(s)	189, 255, 323
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	116, 400, 506, 593
BamHI	GGATCC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	3 cut(s)	341, 485, 638
BceAI	ACGGC	1 cut(s)	716
BciVI	GTATCC	1 cut(s)	745
BclI	TGATCA	1 cut(s)	6
BfaI	CTAG	2 cut(s)	135, 342
BfmI	CTRYAG	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	745
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	255, 267, 339
BlsI	GCNGC	3 cut(s)	256, 268, 340
BmiI	GGNNCC	2 cut(s)	131, 211
BmsI	GCATC	7 cut(s)	46, 265, 325, 360, 369, 574, 730
BpuEI	CTTGAG	3 cut(s)	112, 137, 402
BsaJI	CCNNGG	2 cut(s)	270, 612
BsaXI	ACNNNNNCTCC	6 cut(s)	36, 66, 104, 134, 650, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	3 cut(s)	81, 547, 577
BseDI	CCNNGG	2 cut(s)	270, 612
BseGI	GGATG	3 cut(s)	61, 280, 646
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	30, 219, 716
BseNI	ACTGG	3 cut(s)	81, 547, 577
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	3 cut(s)	191, 257, 325
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	309
BsnI	GGCC	3 cut(s)	191, 257, 325
Bsp143I	GATC	4 cut(s)	6, 209, 298, 424
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	4 cut(s)	72, 254, 267, 578
BspANI	GGCC	3 cut(s)	191, 257, 325
BspCNI	CTCAG	3 cut(s)	31, 220, 715
BspLI	GGNNCC	2 cut(s)	131, 211
BspPI	GGATC	4 cut(s)	204, 217, 293, 419
BspQI	GCTCTTC	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	3 cut(s)	81, 547, 577
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	270, 612
BssMI	GATC	4 cut(s)	6, 209, 298, 424
BssNAI	GTATAC	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	270, 612
Bst1107I	GTATAC	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstC8I	GCNNGC	2 cut(s)	63, 189
BstDEI	CTNAG	4 cut(s)	39, 228, 519, 702
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	3 cut(s)	61, 280, 646
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	4 cut(s)	9, 212, 301, 427
BstMBI	GATC	4 cut(s)	6, 209, 298, 424
BstNSI	RCATGY	2 cut(s)	65, 148
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	209, 424
BstYI	RGATCY	2 cut(s)	209, 424
BstZ17I	GTATAC	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	3 cut(s)	191, 257, 325
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	61, 280, 646
BtsIMutI	CAGTG	3 cut(s)	36, 74, 486
Cac8I	GCNNGC	2 cut(s)	63, 189
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	7 cut(s)	62, 118, 145, 172, 234, 259, 613
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	4 cut(s)	39, 228, 519, 702
DpnI	GATC	4 cut(s)	8, 211, 300, 426
DpnII	GATC	4 cut(s)	6, 209, 298, 424
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
Eco130I	CCWWGG	2 cut(s)	270, 612
Eco57I	CTGAAG	1 cut(s)	38
EcoT14I	CCWWGG	2 cut(s)	270, 612
ErhI	CCWWGG	2 cut(s)	270, 612
FaeI	CATG	7 cut(s)	65, 121, 148, 175, 237, 262, 616
FatI	CATG	7 cut(s)	61, 117, 144, 171, 233, 258, 612
FauI	CCCGC	1 cut(s)	571
FauNDI	CATATG	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	255, 267, 339
FokI	GGATG	3 cut(s)	68, 287, 653
Fsp4HI	GCNGC	3 cut(s)	255, 267, 339
FspAI	RTGCGCAY	1 cut(s)	60
FspBI	CTAG	2 cut(s)	135, 342
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	255, 267, 339
HaeIII	GGCC	3 cut(s)	191, 257, 325
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	7 cut(s)	65, 121, 148, 175, 237, 262, 616
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	2 cut(s)	158, 367
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	4 cut(s)	116, 400, 506, 593
Hpy166II	GTNNAC	3 cut(s)	34, 284, 565
Hpy188I	TCNGA	5 cut(s)	163, 180, 229, 705, 739
Hpy188III	TCNNGA	4 cut(s)	355, 364, 428, 746
Hpy8I	GTNNAC	3 cut(s)	34, 284, 565
HpyAV	CCTTC	4 cut(s)	336, 493, 649, 700
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	237, 406, 507, 674, 713
HpyF3I	CTNAG	4 cut(s)	39, 228, 519, 702
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	7 cut(s)	65, 121, 148, 175, 237, 262, 616
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	6, 209, 298, 424
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	1 cut(s)	686
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	7 cut(s)	46, 265, 325, 360, 369, 574, 730
MaeI	CTAG	2 cut(s)	135, 342
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	85, 484, 538
MalI	GATC	4 cut(s)	8, 211, 300, 426
MboI	GATC	4 cut(s)	6, 209, 298, 424
MboII	GAAGA	5 cut(s)	31, 34, 449, 596, 716
MflI	RGATCY	2 cut(s)	209, 424
MluCI	AATT	4 cut(s)	407, 524, 650, 714
MnlI	CCTC	7 cut(s)	34, 102, 329, 394, 464, 631, 652
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	4 cut(s)	183, 384, 555, 756
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	612
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	6, 209, 298, 424
NlaIII	CATG	7 cut(s)	65, 121, 148, 175, 237, 262, 616
NlaIV	GGNNCC	2 cut(s)	131, 211
NmuCI	GTSAC	3 cut(s)	85, 484, 538
NsbI	TGCGCA	1 cut(s)	60
NspI	RCATGY	2 cut(s)	65, 148
PaeI	GCATGC	1 cut(s)	65
PciI	ACATGT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	729
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	158, 367
PkrI	GCNGC	3 cut(s)	256, 268, 340
PscI	ACATGT	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	131, 211
PsuI	RGATCY	2 cut(s)	209, 424
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	4 cut(s)	183, 384, 555, 756
SatI	GCNGC	3 cut(s)	255, 267, 339
Sau3AI	GATC	4 cut(s)	6, 209, 298, 424
SetI	ASST	8 cut(s)	92, 168, 309, 314, 390, 405, 562, 691
SfaNI	GCATC	7 cut(s)	46, 265, 325, 360, 369, 574, 730
SfcI	CTRYAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	3 cut(s)	91, 152, 417
SmoI	CTYRAG	3 cut(s)	91, 152, 417
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	4 cut(s)	407, 524, 650, 714
SsiI	CCGC	4 cut(s)	72, 254, 267, 578
SspMI	CTAG	2 cut(s)	135, 342
StyI	CCWWGG	2 cut(s)	270, 612
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	67, 747
TasI	AATT	4 cut(s)	407, 524, 650, 714
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	2 cut(s)	257, 269
TfiI	GAWTC	2 cut(s)	158, 367
Tru1I	TTAA	4 cut(s)	183, 384, 555, 756
Tru9I	TTAA	4 cut(s)	183, 384, 555, 756
TscAI	CASTG	3 cut(s)	43, 81, 493
TseFI	GTSAC	3 cut(s)	85, 484, 538
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	3 cut(s)	85, 484, 538
TspDTI	ATGAA	5 cut(s)	106, 275, 370, 588, 657
TspRI	CASTG	3 cut(s)	43, 81, 493
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	2 cut(s)	65, 148
XmiI	GTMKAC	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	135, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.