Prupe.8G011400_v2.0.a1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
931783 .. 933514
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G011400.1

Sequence Viewer

Length: 1656 bp
ATGCCGGCATTGATCTCTCCAAAGTTGCTCCTTTTTGGAGAGTCTCTATCCTTCCATAAGTTTCCACATGTTTCTAGGAATGCTTGGTTCCATAGAAGTGTTTGTAGTCTGAGTCTTGCAAGCCTCGGCTTAAAAAATGATCATGAAACAGTAGAGACTGGGAAAATCAACGAAGCCAAGCTGCTGAATTCTCTTACAGAAGTCCCCAAAAGTAAAGCCAAGGGGGTTAGAAGCCATGTAGTCAAGGCAGCTGGGCAACACAGATCGCTTGAAATAGATTCGACTATCTTTAATGCTAAATCATTTTTTGAGCTTGGGCTTCCACCTTTGTTGATAGAGAGGTTAGAGAAGGAAGGCTTCAAGACTCCAACTGATGTTCAAGCCACTGCAATTCCAACAATTCTTAAAGATCATGATGTTGTGATTCAATCTTACACAGGCTCAGGAAAAACATTGGCTTATCTTCTTCCCATCCTCTCTGAAGTTGGCCCGCTAAAGACGAGAACATCTGATGGTGATGGTGATGGTGAACCTGGGAAGAAAACAGACATAGAAGCAGTAATTGTGGCTCCTTCGAGGGAGCTGGGTATGCAAATTGTGAGAGAGTTTGAGAAGATATTAGGACCTGCAAACAAAAAAGTAGTTCAGCAGCTTGTAGGGGGTGCAAATCGATCAAGACAGGAAGAAGCACTGAGGAAAAATAAACCTTGCATTGTTGTTGGTACCCCGGGAAGGATTTCGGAGATTAGTGCAGCTGGGAAGCTTCACACCCACGGCTGCCGTTTCTTGGTCTTAGATGAGGTTGATCAACTGCTTTCATTTAATTTTCGGGAGGACATGCACCGGATATTGGAACATGTTGGGAGGAAATCCAGTGGAGACTCGCATGGACCAAAAGGCTCCCTTGCCAAGCGGGCTGAGCGTCAGACTGTTCTGGTTTCTGCCACAGTACCATTTTCAGTGATACGGGCAGCCAGGAGCTGGGGGCACGATCCACTTCTCATCCAAGCCAAAAAAGTCATTTCCATTGAATCAATTTCTCCATCTGGACCCATTAATTTGTCAGGACAGTCGACCAGTTCTGATCCATCCTCAAATGTGCAGACTCAGGCTGCAATACAGAGCCTACCTCCATCTCTAAAACACTACTACTGCGTTACAAAGTTACAACACAAGGTTGACACGTTGAGAAGATGTGTTCATGCTCTTGATGCCAAGTCCGTTATTGTCTTCATGAACCACACTAAGCAACTAAAAGATACCGTCTTCAAGCTGGAGGCTCGTGGAATGATAGCAGCAGAGCTACATGGGGATCTTGGTAAACTTGGTAGGACAACAACTCTGAAAAAGTTCAAGAATGGGGAGGTTAGAATTCTGGTGACTAATGAACTTTCAGCGAGGGGTTTGGATGTGGCAGAATGTGATCTTGTAGTCAATCTGGACTTACCCACTGACTCTATTCATTATGCGCATCGAGCTGGTCGGACTGGTCGGCTTGGCAGGAAGGGTACTGTCGTAACAATATGTGAAGAGTCAGAAGTTTTTGTTGTGAAGAAGCTGCAGAGGCAGCTTAGCGTTCCAATTGCAACTTGTGAGTTCACAGAGGGCAAGTTTGTTATCACCGAAGAAGAGAAGGCTCTACCAGCTCTGAGGTGA

Protein Analysis

552

Amino Acids

60.31

Weight (kDa)

9.37

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12770 AT1G12770
fragaria_vesca FvH4_2g15280 FvH4_2g15280 FvH4_2g15280
malus_domestica MD10G1007800.v1.1
prunus_persica Prupe.8G011400_v2.0.a1
pyrus_communis pycom10g00490
rosa_chinensis RchiOBHm_Chr6g0278021
rosa_laevigata RLG00000013248
rosa_multiflora Rmu_co8373311.1_g000001
rosa_roxburghii Rroxscaffold_7G00190590
rosa_rugosa Rorug06G0114100.1
rosa_samantha Rh6AG223800 Rh6BG227900 Rh6CG230400 Rh6DG221400
rosa_wichuraiana Rw6G019550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1470
Acc36I ACCTGC 1 cut(s) 634
Acc65I GGTACC 1 cut(s) 722
AccB1I GGYRCC 1 cut(s) 722
AccB7I CCANNNNNTGG 1 cut(s) 981
AccI GTMKAC 1 cut(s) 1073
AciI CCGC 2 cut(s) 491, 913
AclWI GGATC 3 cut(s) 986, 1079, 1320
AcsI RAATTY 2 cut(s) 187, 1371
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 3 cut(s) 724, 951, 1510
AfiI CCNNNNNNNGG 4 cut(s) 732, 787, 850, 981
AflIII ACRYGT 3 cut(s) 67, 856, 1182
AgsI TTSAA 7 cut(s) 272, 361, 380, 428, 1031, 1270, 1354
AjnI CCWGG 2 cut(s) 532, 974
Alw26I GTCTC 3 cut(s) 48, 149, 873
AlwI GGATC 3 cut(s) 986, 1079, 1320
AlwNI CAGNNNCTG 1 cut(s) 981
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 1 cut(s) 487
ApoI RAATTY 2 cut(s) 187, 1371
AseI ATTAAT 1 cut(s) 1056
Asp700I GAANNNNTTC 2 cut(s) 736, 1349
Asp718I GGTACC 1 cut(s) 722
AspLEI GCGC 1 cut(s) 1471
AspS9I GGNCC 4 cut(s) 488, 623, 890, 1049
AsuC2I CCSGG 2 cut(s) 728, 729
AsuHPI GGTGA 5 cut(s) 527, 533, 539, 1390, 1612
AvaI CYCGRG 1 cut(s) 727
AvaII GGWCC 3 cut(s) 623, 890, 1049
BaeGI GKGCMC 1 cut(s) 990
BaeI ACNNNNGTAYC 2 cut(s) 1500, 1533
BanI GGYRCC 1 cut(s) 722
BauI CACGAG 1 cut(s) 1281
BbsI GAAGAC 2 cut(s) 1222, 1258
BccI CCATC 7 cut(s) 479, 506, 512, 518, 1051, 1096, 1141
BceAI ACGGC 2 cut(s) 765, 790
BciT130I CCWGG 2 cut(s) 534, 976
BclI TGATCA 2 cut(s) 139, 805
BcnI CCSGG 2 cut(s) 728, 729
BcoDI GTCTC 3 cut(s) 48, 149, 873
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 1559
BfuAI ACCTGC 1 cut(s) 634
BglI GCCNNNNNGGC 1 cut(s) 914
BlpI GCTNAGC 2 cut(s) 918, 1571
Bme1390I CCNGG 4 cut(s) 534, 728, 729, 976
Bme18I GGWCC 3 cut(s) 623, 890, 1049
BmeT110I CYCGRG 1 cut(s) 727
BmgT120I GGNCC 4 cut(s) 488, 623, 890, 1049
BmiI GGNNCC 5 cut(s) 89, 570, 724, 901, 1051
BmrFI CCNGG 4 cut(s) 534, 728, 729, 976
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 1201, 1480
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 2 cut(s) 1222, 1258
BplI GAGNNNNNCTC 2 cut(s) 1114, 1146
BpmI CTGGAG 1 cut(s) 1295
Bpu10I CCTNAGC 1 cut(s) 442
Bpu1102I GCTNAGC 2 cut(s) 918, 1571
BpuMI CCSGG 2 cut(s) 728, 729
Bsa29I ATCGAT 1 cut(s) 670
BsaJI CCNNGG 6 cut(s) 124, 219, 533, 726, 727, 772
BsaWI WCCGGW 1 cut(s) 843
Bsc4I CCNNNNNNNGG 4 cut(s) 732, 787, 850, 981
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 4 cut(s) 163, 873, 1077, 1492
BseBI CCWGG 2 cut(s) 534, 976
BseCI ATCGAT 1 cut(s) 670
BseDI CCNNGG 6 cut(s) 124, 219, 533, 726, 727, 772
BseGI GGATG 4 cut(s) 471, 1002, 1088, 1414
BseLI CCNNNNNNNGG 4 cut(s) 732, 787, 850, 981
BseMII CTCAG 6 cut(s) 101, 456, 683, 909, 1121, 1640
BseNI ACTGG 4 cut(s) 163, 873, 1077, 1492
BseSI GKGCMC 1 cut(s) 990
BseYI CCCAGC 4 cut(s) 251, 583, 755, 981
BsgI GTGCAG 2 cut(s) 771, 1121
BshFI GGCC 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 722
BshVI ATCGAT 1 cut(s) 670
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 3 cut(s) 5, 728, 844
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 4 cut(s) 732, 787, 850, 981
BsmAI GTCTC 3 cut(s) 48, 149, 873
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 1 cut(s) 990
Bsp1720I GCTNAGC 2 cut(s) 918, 1571
BspACI CCGC 2 cut(s) 491, 913
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 6 cut(s) 102, 455, 684, 910, 1120, 1641
BspDI ATCGAT 1 cut(s) 670
BspHI TCATGA 3 cut(s) 142, 412, 1233
BspLI GGNNCC 5 cut(s) 89, 570, 724, 901, 1051
BspMAI CTGCAG 1 cut(s) 1563
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 3 cut(s) 986, 1079, 1320
BspT107I GGYRCC 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 4 cut(s) 163, 873, 1077, 1492
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 6 cut(s) 124, 219, 533, 726, 727, 772
BssSI CACGAG 1 cut(s) 1281
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 1281
Bst2UI CCWGG 2 cut(s) 534, 976
Bst4CI ACNGT 6 cut(s) 151, 931, 949, 1071, 1264, 1513
Bst6I CTCTTC 2 cut(s) 1524, 1623
BstC8I GCNNGC 4 cut(s) 6, 121, 491, 915
BstDEI CTNAG 9 cut(s) 110, 442, 692, 793, 918, 1107, 1245, 1571, 1649
BstDSI CCRYGG 1 cut(s) 772
BstF5I GGATG 4 cut(s) 471, 1002, 1088, 1414
BstHHI GCGC 1 cut(s) 1471
BstMAI GTCTC 3 cut(s) 48, 149, 873
BstMWI GCNNNNNNNGC 8 cut(s) 589, 914, 919, 1211, 1475, 1564, 1567, 1643
BstNI CCWGG 2 cut(s) 534, 976
BstNSI RCATGY 3 cut(s) 71, 841, 860
BstSCI CCNGG 4 cut(s) 532, 726, 727, 974
BstSFI CTRYAG 1 cut(s) 1559
BstSLI GKGCMC 1 cut(s) 990
BstV2I GAAGAC 2 cut(s) 1222, 1258
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
Bsu15I ATCGAT 1 cut(s) 670
BsuRI GGCC 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 670
BtgI CCRYGG 1 cut(s) 772
BtsCI GGATG 4 cut(s) 471, 1002, 1088, 1414
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 5 cut(s) 384, 689, 880, 966, 1449
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 4 cut(s) 6, 121, 491, 915
CaiI CAGNNNCTG 1 cut(s) 981
CciI TCATGA 3 cut(s) 142, 412, 1233
CfoI GCGC 1 cut(s) 1471
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 4 cut(s) 488, 623, 890, 1049
Cfr9I CCCGGG 1 cut(s) 727
ClaI ATCGAT 1 cut(s) 670
CseI GACGC 1 cut(s) 911
Csp6I GTAC 3 cut(s) 723, 950, 1509
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviQI GTAC 3 cut(s) 723, 950, 1509
DdeI CTNAG 9 cut(s) 110, 442, 692, 793, 918, 1107, 1245, 1571, 1649
Eam1104I CTCTTC 2 cut(s) 1524, 1623
EarI CTCTTC 2 cut(s) 1524, 1623
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 3 cut(s) 623, 890, 1049
Eco57I CTGAAG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 727
EcoO109I RGGNCCY 1 cut(s) 623
EcoRI GAATTC 2 cut(s) 187, 1371
EcoRII CCWGG 2 cut(s) 532, 974
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 888, 920
FaqI GGGAC 1 cut(s) 188
FauI CCCGC 2 cut(s) 498, 906
FbaI TGATCA 2 cut(s) 139, 805
FblI GTMKAC 1 cut(s) 1073
FokI GGATG 4 cut(s) 458, 989, 1075, 1421
FspAI RTGCGCAY 1 cut(s) 1470
FspBI CTAG 1 cut(s) 75
FspI TGCGCA 1 cut(s) 1470
GlaI GCGC 1 cut(s) 1470
GsaI CCCAGC 4 cut(s) 255, 587, 759, 985
GsuI CTGGAG 1 cut(s) 1295
HaeIII GGCC 1 cut(s) 489
HapII CCGG 3 cut(s) 5, 728, 844
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 1471
Hin6I GCGC 1 cut(s) 1469
HinP1I GCGC 1 cut(s) 1469
HincII GTYRAC 2 cut(s) 1074, 1180
HindII GTYRAC 2 cut(s) 1074, 1180
HindIII AAGCTT 1 cut(s) 761
HpaII CCGG 3 cut(s) 5, 728, 844
HphI GGTGA 5 cut(s) 527, 533, 539, 1390, 1612
Hpy166II GTNNAC 5 cut(s) 530, 1074, 1180, 1322, 1599
Hpy8I GTNNAC 5 cut(s) 530, 1074, 1180, 1322, 1599
HpyAV CCTTC 7 cut(s) 61, 343, 347, 582, 726, 1498, 1627
HpyCH4III ACNGT 6 cut(s) 151, 931, 949, 1071, 1264, 1513
HpyCH4IV ACGT 1 cut(s) 1184
HpyF10VI GCNNNNNNNGC 8 cut(s) 589, 914, 919, 1211, 1475, 1564, 1567, 1643
HpyF3I CTNAG 9 cut(s) 110, 442, 692, 793, 918, 1107, 1245, 1571, 1649
HpySE526I ACGT 1 cut(s) 1184
HspAI GCGC 1 cut(s) 1469
KpnI GGTACC 1 cut(s) 726
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 2 cut(s) 139, 805
LmnI GCTCC 5 cut(s) 33, 574, 580, 905, 978
LweI GCATC 2 cut(s) 1201, 1480
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 1184
MaeIII GTNAC 4 cut(s) 1156, 1164, 1378, 1516
MfeI CAATTG 1 cut(s) 1581
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 1 cut(s) 990
MlyI GAGTC 7 cut(s) 50, 121, 358, 875, 1099, 1448, 1541
MmeI TCCRAC 3 cut(s) 392, 419, 1463
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 2 cut(s) 736, 1349
MseI TTAA 5 cut(s) 131, 291, 405, 822, 1056
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 2 cut(s) 251, 755
MspI CCGG 3 cut(s) 5, 728, 844
MspR9I CCNGG 4 cut(s) 534, 728, 729, 976
MunI CAATTG 1 cut(s) 1581
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 2 cut(s) 534, 976
MwoI GCNNNNNNNGC 8 cut(s) 589, 914, 919, 1211, 1475, 1564, 1567, 1643
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 2 cut(s) 728, 729
NgoMIV GCCGGC 1 cut(s) 4
NlaIV GGNNCC 5 cut(s) 89, 570, 724, 901, 1051
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 1378
NsbI TGCGCA 1 cut(s) 1470
NspI RCATGY 3 cut(s) 71, 841, 860
PagI TCATGA 3 cut(s) 142, 412, 1233
PciI ACATGT 2 cut(s) 67, 856
PctI GAATGC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 2 cut(s) 736, 1349
PfeI GAWTC 3 cut(s) 278, 424, 1031
PflMI CCANNNNNTGG 1 cut(s) 981
PleI GAGTC 7 cut(s) 49, 120, 358, 875, 1099, 1448, 1540
PpsI GAGTC 7 cut(s) 49, 120, 358, 875, 1099, 1448, 1540
PpuMI RGGWCCY 1 cut(s) 623
PscI ACATGT 2 cut(s) 67, 856
PshBI ATTAAT 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 532, 974
PspFI CCCAGC 4 cut(s) 251, 583, 755, 981
PspGI CCWGG 2 cut(s) 532, 974
PspN4I GGNNCC 5 cut(s) 89, 570, 724, 901, 1051
PspPI GGNCC 4 cut(s) 488, 623, 890, 1049
PspPPI RGGWCCY 1 cut(s) 623
PstI CTGCAG 1 cut(s) 1563
PstNI CAGNNNCTG 1 cut(s) 981
PsuI RGATCY 1 cut(s) 1312
PvuII CAGCTG 2 cut(s) 251, 755
RsaI GTAC 3 cut(s) 724, 951, 1510
RsaNI GTAC 3 cut(s) 723, 950, 1509
RseI CAYNNNNRTG 1 cut(s) 96
SalI GTCGAC 1 cut(s) 1072
SaqAI TTAA 5 cut(s) 131, 291, 405, 822, 1056
Sau96I GGNCC 4 cut(s) 488, 623, 890, 1049
SchI GAGTC 7 cut(s) 50, 121, 358, 875, 1099, 1448, 1541
ScrFI CCNGG 4 cut(s) 534, 728, 729, 976
SduI GDGCHC 1 cut(s) 990
SfaNI GCATC 2 cut(s) 1201, 1480
SfcI CTRYAG 1 cut(s) 1559
SinI GGWCC 3 cut(s) 623, 890, 1049
SmaI CCCGGG 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 96
SsiI CCGC 2 cut(s) 491, 913
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 4 cut(s) 532, 726, 727, 974
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 6 cut(s) 151, 931, 949, 1071, 1264, 1513
TaiI ACGT 1 cut(s) 1187
TaqI TCGA 5 cut(s) 281, 575, 670, 1073, 1474
TfiI GAWTC 3 cut(s) 278, 424, 1031
Tru1I TTAA 5 cut(s) 131, 291, 405, 822, 1056
Tru9I TTAA 5 cut(s) 131, 291, 405, 822, 1056
TscAI CASTG 5 cut(s) 391, 696, 880, 966, 1456
TseFI GTSAC 1 cut(s) 1378
Tsp45I GTSAC 1 cut(s) 1378
TspDTI ATGAA 7 cut(s) 159, 807, 1190, 1222, 1250, 1401, 1451
TspGWI ACGGA 1 cut(s) 1210
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 5 cut(s) 391, 696, 880, 966, 1456
Van91I CCANNNNNTGG 1 cut(s) 981
VpaK11BI GGWCC 3 cut(s) 623, 890, 1049
VspI ATTAAT 1 cut(s) 1056
XapI RAATTY 2 cut(s) 187, 1371
XceI RCATGY 3 cut(s) 71, 841, 860
XmaI CCCGGG 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 1073
XmnI GAANNNNTTC 2 cut(s) 736, 1349
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.