DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12770 AT1G12770 |
| fragaria_vesca | FvH4_2g15280 FvH4_2g15280 FvH4_2g15280 |
| malus_domestica | MD10G1007800.v1.1 |
| prunus_persica | Prupe.8G011400_v2.0.a1 |
| pyrus_communis | pycom10g00490 |
| rosa_chinensis | RchiOBHm_Chr6g0278021 |
| rosa_laevigata | RLG00000013248 |
| rosa_multiflora | Rmu_co8373311.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00190590 |
| rosa_rugosa | Rorug06G0114100.1 |
| rosa_samantha | Rh6AG223800 Rh6BG227900 Rh6CG230400 Rh6DG221400 |
| rosa_wichuraiana | Rw6G019550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1470 |
| Acc36I | ACCTGC | 1 cut(s) | 634 |
| Acc65I | GGTACC | 1 cut(s) | 722 |
| AccB1I | GGYRCC | 1 cut(s) | 722 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 981 |
| AccI | GTMKAC | 1 cut(s) | 1073 |
| AciI | CCGC | 2 cut(s) | 491, 913 |
| AclWI | GGATC | 3 cut(s) | 986, 1079, 1320 |
| AcsI | RAATTY | 2 cut(s) | 187, 1371 |
| AcuI | CTGAAG | 1 cut(s) | 501 |
| AfaI | GTAC | 3 cut(s) | 724, 951, 1510 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 732, 787, 850, 981 |
| AflIII | ACRYGT | 3 cut(s) | 67, 856, 1182 |
| AgsI | TTSAA | 7 cut(s) | 272, 361, 380, 428, 1031, 1270, 1354 |
| AjnI | CCWGG | 2 cut(s) | 532, 974 |
| Alw26I | GTCTC | 3 cut(s) | 48, 149, 873 |
| AlwI | GGATC | 3 cut(s) | 986, 1079, 1320 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 981 |
| Ama87I | CYCGRG | 1 cut(s) | 727 |
| AoxI | GGCC | 1 cut(s) | 487 |
| ApoI | RAATTY | 2 cut(s) | 187, 1371 |
| AseI | ATTAAT | 1 cut(s) | 1056 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 736, 1349 |
| Asp718I | GGTACC | 1 cut(s) | 722 |
| AspLEI | GCGC | 1 cut(s) | 1471 |
| AspS9I | GGNCC | 4 cut(s) | 488, 623, 890, 1049 |
| AsuC2I | CCSGG | 2 cut(s) | 728, 729 |
| AsuHPI | GGTGA | 5 cut(s) | 527, 533, 539, 1390, 1612 |
| AvaI | CYCGRG | 1 cut(s) | 727 |
| AvaII | GGWCC | 3 cut(s) | 623, 890, 1049 |
| BaeGI | GKGCMC | 1 cut(s) | 990 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1500, 1533 |
| BanI | GGYRCC | 1 cut(s) | 722 |
| BauI | CACGAG | 1 cut(s) | 1281 |
| BbsI | GAAGAC | 2 cut(s) | 1222, 1258 |
| BccI | CCATC | 7 cut(s) | 479, 506, 512, 518, 1051, 1096, 1141 |
| BceAI | ACGGC | 2 cut(s) | 765, 790 |
| BciT130I | CCWGG | 2 cut(s) | 534, 976 |
| BclI | TGATCA | 2 cut(s) | 139, 805 |
| BcnI | CCSGG | 2 cut(s) | 728, 729 |
| BcoDI | GTCTC | 3 cut(s) | 48, 149, 873 |
| BfaI | CTAG | 1 cut(s) | 75 |
| BfmI | CTRYAG | 1 cut(s) | 1559 |
| BfuAI | ACCTGC | 1 cut(s) | 634 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 914 |
| BlpI | GCTNAGC | 2 cut(s) | 918, 1571 |
| Bme1390I | CCNGG | 4 cut(s) | 534, 728, 729, 976 |
| Bme18I | GGWCC | 3 cut(s) | 623, 890, 1049 |
| BmeT110I | CYCGRG | 1 cut(s) | 727 |
| BmgT120I | GGNCC | 4 cut(s) | 488, 623, 890, 1049 |
| BmiI | GGNNCC | 5 cut(s) | 89, 570, 724, 901, 1051 |
| BmrFI | CCNGG | 4 cut(s) | 534, 728, 729, 976 |
| BmrI | ACTGGG | 1 cut(s) | 168 |
| BmsI | GCATC | 2 cut(s) | 1201, 1480 |
| BmuI | ACTGGG | 1 cut(s) | 168 |
| BpiI | GAAGAC | 2 cut(s) | 1222, 1258 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1114, 1146 |
| BpmI | CTGGAG | 1 cut(s) | 1295 |
| Bpu10I | CCTNAGC | 1 cut(s) | 442 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 918, 1571 |
| BpuMI | CCSGG | 2 cut(s) | 728, 729 |
| Bsa29I | ATCGAT | 1 cut(s) | 670 |
| BsaJI | CCNNGG | 6 cut(s) | 124, 219, 533, 726, 727, 772 |
| BsaWI | WCCGGW | 1 cut(s) | 843 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 732, 787, 850, 981 |
| Bse118I | RCCGGY | 1 cut(s) | 4 |
| Bse1I | ACTGG | 4 cut(s) | 163, 873, 1077, 1492 |
| BseBI | CCWGG | 2 cut(s) | 534, 976 |
| BseCI | ATCGAT | 1 cut(s) | 670 |
| BseDI | CCNNGG | 6 cut(s) | 124, 219, 533, 726, 727, 772 |
| BseGI | GGATG | 4 cut(s) | 471, 1002, 1088, 1414 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 732, 787, 850, 981 |
| BseMII | CTCAG | 6 cut(s) | 101, 456, 683, 909, 1121, 1640 |
| BseNI | ACTGG | 4 cut(s) | 163, 873, 1077, 1492 |
| BseSI | GKGCMC | 1 cut(s) | 990 |
| BseYI | CCCAGC | 4 cut(s) | 251, 583, 755, 981 |
| BsgI | GTGCAG | 2 cut(s) | 771, 1121 |
| BshFI | GGCC | 1 cut(s) | 489 |
| BshNI | GGYRCC | 1 cut(s) | 722 |
| BshVI | ATCGAT | 1 cut(s) | 670 |
| BsiHKCI | CYCGRG | 1 cut(s) | 727 |
| BsiSI | CCGG | 3 cut(s) | 5, 728, 844 |
| BslFI | GGGAC | 1 cut(s) | 188 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 732, 787, 850, 981 |
| BsmAI | GTCTC | 3 cut(s) | 48, 149, 873 |
| BsmFI | GGGAC | 1 cut(s) | 188 |
| BsmI | GAATGC | 1 cut(s) | 85 |
| BsnI | GGCC | 1 cut(s) | 489 |
| BsoBI | CYCGRG | 1 cut(s) | 727 |
| Bsp1286I | GDGCHC | 1 cut(s) | 990 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 918, 1571 |
| BspACI | CCGC | 2 cut(s) | 491, 913 |
| BspANI | GGCC | 1 cut(s) | 489 |
| BspCNI | CTCAG | 6 cut(s) | 102, 455, 684, 910, 1120, 1641 |
| BspDI | ATCGAT | 1 cut(s) | 670 |
| BspHI | TCATGA | 3 cut(s) | 142, 412, 1233 |
| BspLI | GGNNCC | 5 cut(s) | 89, 570, 724, 901, 1051 |
| BspMAI | CTGCAG | 1 cut(s) | 1563 |
| BspMI | ACCTGC | 1 cut(s) | 634 |
| BspPI | GGATC | 3 cut(s) | 986, 1079, 1320 |
| BspT107I | GGYRCC | 1 cut(s) | 722 |
| BsrFI | RCCGGY | 1 cut(s) | 4 |
| BsrI | ACTGG | 4 cut(s) | 163, 873, 1077, 1492 |
| BssAI | RCCGGY | 1 cut(s) | 4 |
| BssECI | CCNNGG | 6 cut(s) | 124, 219, 533, 726, 727, 772 |
| BssSI | CACGAG | 1 cut(s) | 1281 |
| BssT1I | CCWWGG | 1 cut(s) | 219 |
| Bst2BI | CACGAG | 1 cut(s) | 1281 |
| Bst2UI | CCWGG | 2 cut(s) | 534, 976 |
| Bst4CI | ACNGT | 6 cut(s) | 151, 931, 949, 1071, 1264, 1513 |
| Bst6I | CTCTTC | 2 cut(s) | 1524, 1623 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 121, 491, 915 |
| BstDEI | CTNAG | 9 cut(s) | 110, 442, 692, 793, 918, 1107, 1245, 1571, 1649 |
| BstDSI | CCRYGG | 1 cut(s) | 772 |
| BstF5I | GGATG | 4 cut(s) | 471, 1002, 1088, 1414 |
| BstHHI | GCGC | 1 cut(s) | 1471 |
| BstMAI | GTCTC | 3 cut(s) | 48, 149, 873 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 589, 914, 919, 1211, 1475, 1564, 1567, 1643 |
| BstNI | CCWGG | 2 cut(s) | 534, 976 |
| BstNSI | RCATGY | 3 cut(s) | 71, 841, 860 |
| BstSCI | CCNGG | 4 cut(s) | 532, 726, 727, 974 |
| BstSFI | CTRYAG | 1 cut(s) | 1559 |
| BstSLI | GKGCMC | 1 cut(s) | 990 |
| BstV2I | GAAGAC | 2 cut(s) | 1222, 1258 |
| BstX2I | RGATCY | 1 cut(s) | 1312 |
| BstYI | RGATCY | 1 cut(s) | 1312 |
| Bsu15I | ATCGAT | 1 cut(s) | 670 |
| BsuRI | GGCC | 1 cut(s) | 489 |
| BsuTUI | ATCGAT | 1 cut(s) | 670 |
| BtgI | CCRYGG | 1 cut(s) | 772 |
| BtsCI | GGATG | 4 cut(s) | 471, 1002, 1088, 1414 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 5 cut(s) | 384, 689, 880, 966, 1449 |
| BveI | ACCTGC | 1 cut(s) | 634 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 121, 491, 915 |
| CaiI | CAGNNNCTG | 1 cut(s) | 981 |
| CciI | TCATGA | 3 cut(s) | 142, 412, 1233 |
| CfoI | GCGC | 1 cut(s) | 1471 |
| Cfr10I | RCCGGY | 1 cut(s) | 4 |
| Cfr13I | GGNCC | 4 cut(s) | 488, 623, 890, 1049 |
| Cfr9I | CCCGGG | 1 cut(s) | 727 |
| ClaI | ATCGAT | 1 cut(s) | 670 |
| CseI | GACGC | 1 cut(s) | 911 |
| Csp6I | GTAC | 3 cut(s) | 723, 950, 1509 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 312, 347 |
| CviQI | GTAC | 3 cut(s) | 723, 950, 1509 |
| DdeI | CTNAG | 9 cut(s) | 110, 442, 692, 793, 918, 1107, 1245, 1571, 1649 |
| Eam1104I | CTCTTC | 2 cut(s) | 1524, 1623 |
| EarI | CTCTTC | 2 cut(s) | 1524, 1623 |
| Eco130I | CCWWGG | 1 cut(s) | 219 |
| Eco47I | GGWCC | 3 cut(s) | 623, 890, 1049 |
| Eco57I | CTGAAG | 1 cut(s) | 501 |
| Eco88I | CYCGRG | 1 cut(s) | 727 |
| EcoO109I | RGGNCCY | 1 cut(s) | 623 |
| EcoRI | GAATTC | 2 cut(s) | 187, 1371 |
| EcoRII | CCWGG | 2 cut(s) | 532, 974 |
| EcoT14I | CCWWGG | 1 cut(s) | 219 |
| ErhI | CCWWGG | 1 cut(s) | 219 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 341, 373, 888, 920 |
| FaqI | GGGAC | 1 cut(s) | 188 |
| FauI | CCCGC | 2 cut(s) | 498, 906 |
| FbaI | TGATCA | 2 cut(s) | 139, 805 |
| FblI | GTMKAC | 1 cut(s) | 1073 |
| FokI | GGATG | 4 cut(s) | 458, 989, 1075, 1421 |
| FspAI | RTGCGCAY | 1 cut(s) | 1470 |
| FspBI | CTAG | 1 cut(s) | 75 |
| FspI | TGCGCA | 1 cut(s) | 1470 |
| GlaI | GCGC | 1 cut(s) | 1470 |
| GsaI | CCCAGC | 4 cut(s) | 255, 587, 759, 985 |
| GsuI | CTGGAG | 1 cut(s) | 1295 |
| HaeIII | GGCC | 1 cut(s) | 489 |
| HapII | CCGG | 3 cut(s) | 5, 728, 844 |
| HgaI | GACGC | 1 cut(s) | 911 |
| HhaI | GCGC | 1 cut(s) | 1471 |
| Hin6I | GCGC | 1 cut(s) | 1469 |
| HinP1I | GCGC | 1 cut(s) | 1469 |
| HincII | GTYRAC | 2 cut(s) | 1074, 1180 |
| HindII | GTYRAC | 2 cut(s) | 1074, 1180 |
| HindIII | AAGCTT | 1 cut(s) | 761 |
| HpaII | CCGG | 3 cut(s) | 5, 728, 844 |
| HphI | GGTGA | 5 cut(s) | 527, 533, 539, 1390, 1612 |
| Hpy166II | GTNNAC | 5 cut(s) | 530, 1074, 1180, 1322, 1599 |
| Hpy8I | GTNNAC | 5 cut(s) | 530, 1074, 1180, 1322, 1599 |
| HpyAV | CCTTC | 7 cut(s) | 61, 343, 347, 582, 726, 1498, 1627 |
| HpyCH4III | ACNGT | 6 cut(s) | 151, 931, 949, 1071, 1264, 1513 |
| HpyCH4IV | ACGT | 1 cut(s) | 1184 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 589, 914, 919, 1211, 1475, 1564, 1567, 1643 |
| HpyF3I | CTNAG | 9 cut(s) | 110, 442, 692, 793, 918, 1107, 1245, 1571, 1649 |
| HpySE526I | ACGT | 1 cut(s) | 1184 |
| HspAI | GCGC | 1 cut(s) | 1469 |
| KpnI | GGTACC | 1 cut(s) | 726 |
| KroI | GCCGGC | 1 cut(s) | 4 |
| KroNI | GCCGGC | 1 cut(s) | 6 |
| Ksp22I | TGATCA | 2 cut(s) | 139, 805 |
| LmnI | GCTCC | 5 cut(s) | 33, 574, 580, 905, 978 |
| LweI | GCATC | 2 cut(s) | 1201, 1480 |
| MaeI | CTAG | 1 cut(s) | 75 |
| MaeII | ACGT | 1 cut(s) | 1184 |
| MaeIII | GTNAC | 4 cut(s) | 1156, 1164, 1378, 1516 |
| MfeI | CAATTG | 1 cut(s) | 1581 |
| MflI | RGATCY | 1 cut(s) | 1312 |
| MhlI | GDGCHC | 1 cut(s) | 990 |
| MlyI | GAGTC | 7 cut(s) | 50, 121, 358, 875, 1099, 1448, 1541 |
| MmeI | TCCRAC | 3 cut(s) | 392, 419, 1463 |
| MroNI | GCCGGC | 1 cut(s) | 4 |
| MroXI | GAANNNNTTC | 2 cut(s) | 736, 1349 |
| MseI | TTAA | 5 cut(s) | 131, 291, 405, 822, 1056 |
| MslI | CAYNNNNRTG | 1 cut(s) | 96 |
| MspA1I | CMGCKG | 2 cut(s) | 251, 755 |
| MspI | CCGG | 3 cut(s) | 5, 728, 844 |
| MspR9I | CCNGG | 4 cut(s) | 534, 728, 729, 976 |
| MunI | CAATTG | 1 cut(s) | 1581 |
| Mva1269I | GAATGC | 1 cut(s) | 85 |
| MvaI | CCWGG | 2 cut(s) | 534, 976 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 589, 914, 919, 1211, 1475, 1564, 1567, 1643 |
| NaeI | GCCGGC | 1 cut(s) | 6 |
| NciI | CCSGG | 2 cut(s) | 728, 729 |
| NgoMIV | GCCGGC | 1 cut(s) | 4 |
| NlaIV | GGNNCC | 5 cut(s) | 89, 570, 724, 901, 1051 |
| NmeAIII | GCCGAG | 1 cut(s) | 105 |
| NmuCI | GTSAC | 1 cut(s) | 1378 |
| NsbI | TGCGCA | 1 cut(s) | 1470 |
| NspI | RCATGY | 3 cut(s) | 71, 841, 860 |
| PagI | TCATGA | 3 cut(s) | 142, 412, 1233 |
| PciI | ACATGT | 2 cut(s) | 67, 856 |
| PctI | GAATGC | 1 cut(s) | 85 |
| PdiI | GCCGGC | 1 cut(s) | 6 |
| PdmI | GAANNNNTTC | 2 cut(s) | 736, 1349 |
| PfeI | GAWTC | 3 cut(s) | 278, 424, 1031 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 981 |
| PleI | GAGTC | 7 cut(s) | 49, 120, 358, 875, 1099, 1448, 1540 |
| PpsI | GAGTC | 7 cut(s) | 49, 120, 358, 875, 1099, 1448, 1540 |
| PpuMI | RGGWCCY | 1 cut(s) | 623 |
| PscI | ACATGT | 2 cut(s) | 67, 856 |
| PshBI | ATTAAT | 1 cut(s) | 1056 |
| Psp5II | RGGWCCY | 1 cut(s) | 623 |
| Psp6I | CCWGG | 2 cut(s) | 532, 974 |
| PspFI | CCCAGC | 4 cut(s) | 251, 583, 755, 981 |
| PspGI | CCWGG | 2 cut(s) | 532, 974 |
| PspN4I | GGNNCC | 5 cut(s) | 89, 570, 724, 901, 1051 |
| PspPI | GGNCC | 4 cut(s) | 488, 623, 890, 1049 |
| PspPPI | RGGWCCY | 1 cut(s) | 623 |
| PstI | CTGCAG | 1 cut(s) | 1563 |
| PstNI | CAGNNNCTG | 1 cut(s) | 981 |
| PsuI | RGATCY | 1 cut(s) | 1312 |
| PvuII | CAGCTG | 2 cut(s) | 251, 755 |
| RsaI | GTAC | 3 cut(s) | 724, 951, 1510 |
| RsaNI | GTAC | 3 cut(s) | 723, 950, 1509 |
| RseI | CAYNNNNRTG | 1 cut(s) | 96 |
| SalI | GTCGAC | 1 cut(s) | 1072 |
| SaqAI | TTAA | 5 cut(s) | 131, 291, 405, 822, 1056 |
| Sau96I | GGNCC | 4 cut(s) | 488, 623, 890, 1049 |
| SchI | GAGTC | 7 cut(s) | 50, 121, 358, 875, 1099, 1448, 1541 |
| ScrFI | CCNGG | 4 cut(s) | 534, 728, 729, 976 |
| SduI | GDGCHC | 1 cut(s) | 990 |
| SfaNI | GCATC | 2 cut(s) | 1201, 1480 |
| SfcI | CTRYAG | 1 cut(s) | 1559 |
| SinI | GGWCC | 3 cut(s) | 623, 890, 1049 |
| SmaI | CCCGGG | 1 cut(s) | 729 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 96 |
| SsiI | CCGC | 2 cut(s) | 491, 913 |
| SspMI | CTAG | 1 cut(s) | 75 |
| StyD4I | CCNGG | 4 cut(s) | 532, 726, 727, 974 |
| StyI | CCWWGG | 1 cut(s) | 219 |
| TaaI | ACNGT | 6 cut(s) | 151, 931, 949, 1071, 1264, 1513 |
| TaiI | ACGT | 1 cut(s) | 1187 |
| TaqI | TCGA | 5 cut(s) | 281, 575, 670, 1073, 1474 |
| TfiI | GAWTC | 3 cut(s) | 278, 424, 1031 |
| Tru1I | TTAA | 5 cut(s) | 131, 291, 405, 822, 1056 |
| Tru9I | TTAA | 5 cut(s) | 131, 291, 405, 822, 1056 |
| TscAI | CASTG | 5 cut(s) | 391, 696, 880, 966, 1456 |
| TseFI | GTSAC | 1 cut(s) | 1378 |
| Tsp45I | GTSAC | 1 cut(s) | 1378 |
| TspDTI | ATGAA | 7 cut(s) | 159, 807, 1190, 1222, 1250, 1401, 1451 |
| TspGWI | ACGGA | 1 cut(s) | 1210 |
| TspMI | CCCGGG | 1 cut(s) | 727 |
| TspRI | CASTG | 5 cut(s) | 391, 696, 880, 966, 1456 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 981 |
| VpaK11BI | GGWCC | 3 cut(s) | 623, 890, 1049 |
| VspI | ATTAAT | 1 cut(s) | 1056 |
| XapI | RAATTY | 2 cut(s) | 187, 1371 |
| XceI | RCATGY | 3 cut(s) | 71, 841, 860 |
| XmaI | CCCGGG | 1 cut(s) | 727 |
| XmiI | GTMKAC | 1 cut(s) | 1073 |
| XmnI | GAANNNNTTC | 2 cut(s) | 736, 1349 |
| XspI | CTAG | 1 cut(s) | 75 |