Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8373311.1

Orthogroup ID

OG0013174

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1133

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8373311.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1133 bp

cctatcctctctgaagtaggccccctaaaggagaaaccatctgatggtgatggtgaatatgggaagagaacagacatagaagcagttattgtggctccttccagggagctgggcatgcagattgtaagggagttcgaaaagatattaggacctgcaaacaagaaaatggttcagcagcttgtagggggtgcaaatcgatcaagacaagaagaagcacttaagaagaataagcctgcgattgttgttgggacaccaggcaggattgcagagattagtgcagctgggaagcttcacacccacggctgccgtttcttggtcttagatgaggttgatcaactgctttcttttaattttcgggaggacatgcaccggatattggaacacgtagggaggaagtccagtgcagagtcacatggaccaaaaggctcacttgccaagcgagctgagcgtcagactattttggtttcagcaacagtaccattttcagtgataagggcagccagtagctgggggcgcgatccacttctggtccaagccaaaaatgtcattccccttgattccatctcgccctctggacccactacattgtcaggacattcgaccagtacaaactcaaactcaaatttgcagggtcattctgcaatagaaagcctacctccatctcttaaacactactactgtgtaacaaagttacaacacaaggttgatgcattgagaagatgtgttcatgctctggatgccaaatctgtcatagccttcatgaaccacactaggcagctaaaagataccgtcttcaagctggaggcccgtggaatgacggcgtcagagctacatggggatcttggtaaacttggtagggcaacaactatgaaaaaattcaaaaagggggaggtgagaattctggtgacaaatgaactttcagcaaggggattggatgtggcagaatgtgatcttgttgtcaatctggacttacccactgacacaattcattatgcacatcgagctggtcggactggtcgtcttggcaggaagggcactgtggtaacaatgtgcgaagaatcagaagttttcgttgtgaggaaactgcagaagcagcttggcattcccattccagcttgtgagtttacagaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009663 GO:0009987 GO:0010496 GO:0010497 GO:0010501 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034330 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0046483 GO:0051179 GO:0051234 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

378

Amino Acids

41.28

Weight (kDa)

9.42

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12770 AT1G12770
fragaria_vesca	FvH4_2g15280 FvH4_2g15280 FvH4_2g15280
malus_domestica	MD10G1007800.v1.1
prunus_persica	Prupe.8G011400_v2.0.a1
pyrus_communis	pycom10g00490
rosa_chinensis	RchiOBHm_Chr6g0278021
rosa_laevigata	RLG00000013248
rosa_multiflora	Rmu_co8373311.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190590
rosa_rugosa	Rorug06G0114100.1
rosa_samantha	Rh6AG223800 Rh6BG227900 Rh6CG230400 Rh6DG221400
rosa_wichuraiana	Rw6G019550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AccB7I	CCANNNNNTGG	2 cut(s)	44, 507
AccII	CGCG	1 cut(s)	516
AclWI	GGATC	2 cut(s)	512, 846
AcsI	RAATTY	3 cut(s)	622, 875, 897
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	821
AfaI	GTAC	2 cut(s)	477, 607
AfiI	CCNNNNNNNGG	5 cut(s)	28, 44, 313, 376, 507
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	796, 880
AhdI	GACNNNNNGTC	1 cut(s)	1017
AjnI	CCWGG	2 cut(s)	101, 253
AlwI	GGATC	2 cut(s)	512, 846
AlwNI	CAGNNNCTG	1 cut(s)	507
AoxI	GGCC	2 cut(s)	19, 804
ApeKI	GCWGC	6 cut(s)	175, 278, 303, 497, 775, 1093
ApoI	RAATTY	3 cut(s)	622, 875, 897
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	6 cut(s)	20, 149, 416, 529, 575, 805
AsuHPI	GGTGA	4 cut(s)	59, 65, 904, 916
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	4 cut(s)	149, 416, 529, 575
BaeGI	GKGCMC	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	784
BbvI	GCAGC	6 cut(s)	187, 290, 290, 509, 787, 1105
BccI	CCATC	5 cut(s)	38, 44, 46, 569, 667
BceAI	ACGGC	3 cut(s)	291, 316, 834
BciT130I	CCWGG	2 cut(s)	103, 255
BclI	TGATCA	1 cut(s)	331
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	1085
BfrI	CTTAAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	6 cut(s)	176, 279, 304, 498, 776, 1094
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	6 cut(s)	177, 280, 305, 499, 777, 1095
Bme1390I	CCNGG	2 cut(s)	103, 255
Bme18I	GGWCC	4 cut(s)	149, 416, 529, 575
BmeRI	GACNNNNNGTC	1 cut(s)	1017
BmgT120I	GGNCC	6 cut(s)	20, 149, 416, 529, 575, 805
BmiI	GGNNCC	3 cut(s)	22, 96, 577
BmrFI	CCNGG	2 cut(s)	103, 255
BmsI	GCATC	2 cut(s)	697, 727
BpiI	GAAGAC	1 cut(s)	784
BpmI	CTGGAG	1 cut(s)	821
Bpu1102I	GCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	196
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	821
BsaJI	CCNNGG	3 cut(s)	102, 298, 808
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 44, 313, 376, 507
Bse1I	ACTGG	4 cut(s)	399, 501, 603, 1018
BseBI	CCWGG	2 cut(s)	103, 255
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	102, 298, 808
BseGI	GGATG	2 cut(s)	742, 940
BseLI	CCNNNNNNNGG	5 cut(s)	28, 44, 313, 376, 507
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	4 cut(s)	399, 501, 603, 1018
BseSI	GKGCMC	1 cut(s)	1037
BseXI	GCAGC	6 cut(s)	187, 290, 290, 509, 787, 1105
BseYI	CCCAGC	3 cut(s)	109, 281, 507
BsgI	GTGCAG	2 cut(s)	297, 423
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	21, 806
BshVI	ATCGAT	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	5 cut(s)	28, 44, 313, 376, 507
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	1101
BsnI	GGCC	2 cut(s)	21, 806
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	1037
Bsp143I	GATC	5 cut(s)	197, 331, 517, 838, 949
Bsp1720I	GCTNAGC	1 cut(s)	444
BspANI	GGCC	2 cut(s)	21, 806
BspCNI	CTCAG	1 cut(s)	436
BspDI	ATCGAT	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	3 cut(s)	22, 96, 577
BspMAI	CTGCAG	1 cut(s)	1089
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	2 cut(s)	512, 846
BspT104I	TTCGAA	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	399, 501, 603, 1018
BssECI	CCNNGG	3 cut(s)	102, 298, 808
BssMI	GATC	5 cut(s)	197, 331, 517, 838, 949
BssNI	GRCGYC	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	103, 255
Bst4CI	ACNGT	4 cut(s)	475, 680, 790, 1039
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	821
BstAFI	CTTAAG	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	116, 234, 441
BstDEI	CTNAG	2 cut(s)	319, 444
BstDSI	CCRYGG	2 cut(s)	298, 808
BstF5I	GGATG	2 cut(s)	742, 940
BstFNI	CGCG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	5 cut(s)	200, 334, 520, 841, 952
BstMBI	GATC	5 cut(s)	197, 331, 517, 838, 949
BstMWI	GCNNNNNNNGC	8 cut(s)	115, 440, 445, 513, 737, 1001, 1032, 1093
BstNI	CCWGG	2 cut(s)	103, 255
BstNSI	RCATGY	2 cut(s)	118, 367
BstSCI	CCNGG	2 cut(s)	101, 253
BstSFI	CTRYAG	1 cut(s)	1085
BstSLI	GKGCMC	1 cut(s)	1037
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	6 cut(s)	187, 290, 290, 509, 787, 1105
BstV2I	GAAGAC	1 cut(s)	784
BstX2I	RGATCY	1 cut(s)	838
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	838
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	21, 806
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	2 cut(s)	298, 808
BtsCI	GGATG	2 cut(s)	742, 940
BtsIMutI	CAGTG	4 cut(s)	406, 492, 975, 1035
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	116, 234, 441
CaiI	CAGNNNCTG	1 cut(s)	507
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	6 cut(s)	20, 149, 416, 529, 575, 805
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	2 cut(s)	437, 810
Csp6I	GTAC	2 cut(s)	476, 606
CviAII	CATG	6 cut(s)	115, 364, 413, 728, 760, 833
CviQI	GTAC	2 cut(s)	476, 606
DdeI	CTNAG	2 cut(s)	319, 444
DpnI	GATC	5 cut(s)	199, 333, 519, 840, 951
DpnII	GATC	5 cut(s)	197, 331, 517, 838, 949
DriI	GACNNNNNGTC	1 cut(s)	1017
Eam1104I	CTCTTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	1017
EarI	CTCTTC	1 cut(s)	59
Eco47I	GGWCC	4 cut(s)	149, 416, 529, 575
Eco57I	CTGAAG	1 cut(s)	33
EcoO109I	RGGNCCY	2 cut(s)	20, 149
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	2 cut(s)	101, 253
EcoT22I	ATGCAT	1 cut(s)	712
FaeI	CATG	6 cut(s)	118, 367, 416, 731, 763, 836
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 414, 446
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	6 cut(s)	114, 363, 412, 727, 759, 832
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	6 cut(s)	176, 279, 304, 498, 776, 1094
FokI	GGATG	2 cut(s)	749, 947
Fsp4HI	GCNGC	6 cut(s)	176, 279, 304, 498, 776, 1094
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	6 cut(s)	176, 279, 304, 498, 776, 1094
GsaI	CCCAGC	3 cut(s)	113, 285, 511
GsuI	CTGGAG	1 cut(s)	821
HaeIII	GGCC	2 cut(s)	21, 806
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	2 cut(s)	437, 810
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	6 cut(s)	118, 367, 416, 731, 763, 836
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	407, 557, 1058
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	4 cut(s)	59, 65, 904, 916
Hpy166II	GTNNAC	2 cut(s)	848, 1125
Hpy188I	TCNGA	6 cut(s)	13, 43, 453, 826, 1011, 1063
Hpy188III	TCNNGA	7 cut(s)	201, 356, 573, 591, 734, 760, 965
Hpy8I	GTNNAC	2 cut(s)	848, 1125
HpyAV	CCTTC	4 cut(s)	108, 766, 1024, 1124
HpyCH4III	ACNGT	4 cut(s)	475, 680, 790, 1039
HpyCH4IV	ACGT	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	8 cut(s)	115, 440, 445, 513, 737, 1001, 1032, 1093
HpyF3I	CTNAG	2 cut(s)	319, 444
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	6 cut(s)	118, 367, 416, 731, 763, 836
HspAI	GCGC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	197, 331, 517, 838, 949
LmnI	GCTCC	2 cut(s)	100, 106
Lsp1109I	GCAGC	6 cut(s)	187, 290, 290, 509, 787, 1105
LweI	GCATC	2 cut(s)	697, 727
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	5 cut(s)	408, 682, 690, 904, 1042
MalI	GATC	5 cut(s)	199, 333, 519, 840, 951
MboI	GATC	5 cut(s)	197, 331, 517, 838, 949
MboII	GAAGA	6 cut(s)	76, 221, 235, 729, 784, 1067
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	1 cut(s)	1037
MluCI	AATT	5 cut(s)	349, 622, 875, 897, 984
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	989
MnlI	CCTC	9 cut(s)	17, 319, 352, 384, 580, 666, 796, 883, 1071
Mph1103I	ATGCAT	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	3 cut(s)	219, 348, 666
MspA1I	CMGCKG	1 cut(s)	281
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	103, 255
Mva1269I	GAATGC	1 cut(s)	1101
MvaI	CCWGG	2 cut(s)	103, 255
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	8 cut(s)	115, 440, 445, 513, 737, 1001, 1032, 1093
NdeII	GATC	5 cut(s)	197, 331, 517, 838, 949
NlaIII	CATG	6 cut(s)	118, 367, 416, 731, 763, 836
NlaIV	GGNNCC	3 cut(s)	22, 96, 577
NmuCI	GTSAC	2 cut(s)	408, 904
NsiI	ATGCAT	1 cut(s)	712
NspI	RCATGY	2 cut(s)	118, 367
NspV	TTCGAA	1 cut(s)	135
PaeI	GCATGC	1 cut(s)	118
PagI	TCATGA	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	1015
PctI	GAATGC	1 cut(s)	1101
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	2 cut(s)	557, 1058
PflFI	GACNNNGTC	1 cut(s)	820
PflMI	CCANNNNNTGG	2 cut(s)	44, 507
PkrI	GCNGC	6 cut(s)	177, 280, 305, 499, 777, 1095
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	385
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	101, 253
PspFI	CCCAGC	3 cut(s)	109, 281, 507
PspGI	CCWGG	2 cut(s)	101, 253
PspN4I	GGNNCC	3 cut(s)	22, 96, 577
PspPI	GGNCC	6 cut(s)	20, 149, 416, 529, 575, 805
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	1089
PstNI	CAGNNNCTG	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	838
PsyI	GACNNNGTC	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	477, 607
RsaNI	GTAC	2 cut(s)	476, 606
SaqAI	TTAA	3 cut(s)	219, 348, 666
SatI	GCNGC	6 cut(s)	176, 279, 304, 498, 776, 1094
Sau3AI	GATC	5 cut(s)	197, 331, 517, 838, 949
Sau96I	GGNCC	6 cut(s)	20, 149, 416, 529, 575, 805
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	103, 255
SduI	GDGCHC	1 cut(s)	1037
SfaNI	GCATC	2 cut(s)	697, 727
SfcI	CTRYAG	1 cut(s)	1085
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	4 cut(s)	149, 416, 529, 575
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	5 cut(s)	349, 622, 875, 897, 984
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	2 cut(s)	101, 253
TaaI	ACNGT	4 cut(s)	475, 680, 790, 1039
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	4 cut(s)	135, 196, 599, 1000
TasI	AATT	5 cut(s)	349, 622, 875, 897, 984
TatI	WGTACW	1 cut(s)	605
TfiI	GAWTC	2 cut(s)	557, 1058
Tru1I	TTAA	3 cut(s)	219, 348, 666
Tru9I	TTAA	3 cut(s)	219, 348, 666
TscAI	CASTG	4 cut(s)	406, 492, 982, 1042
TseFI	GTSAC	2 cut(s)	408, 904
TseI	GCWGC	6 cut(s)	175, 278, 303, 497, 775, 1093
Tsp45I	GTSAC	2 cut(s)	408, 904
TspDTI	ATGAA	6 cut(s)	716, 748, 776, 884, 927, 977
TspRI	CASTG	4 cut(s)	406, 492, 982, 1042
Tth111I	GACNNNGTC	1 cut(s)	820
Van91I	CCANNNNNTGG	2 cut(s)	44, 507
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	4 cut(s)	149, 416, 529, 575
XapI	RAATTY	3 cut(s)	622, 875, 897
XceI	RCATGY	2 cut(s)	118, 367
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.