Prupe.8G028800_v2.0.a1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
2613603 .. 2616785
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G028800.1

Sequence Viewer

Length: 1773 bp
ATGCCTGCAGTTGATGTGCCTGTGCCTGACAGCTCATCCACTATGCTGGCGGCAGGGAGCTCCAGCGGCGAAGGCGTGGTGGGGGTAGTTCGTGAAGGCAGTCATGAAACGACTGCCGTTTTGTCAAATTCAGTCCAAGAAGACAAGGACGGCAGAGTTGATGATCTGAGGGACCGGAATTTATATGGAGGAAACCGATGGCCTCGCCAAGAAACCCTGGCGCTGTTGAAGATACGGTCGCAAATGGATGCTGCTTTTCGTGACTCTAGTCTCAAAGCTCCATTATGGGAAGATGTTTCAAGGAAGCTAGGTGAGCATGGTTATTACCGAAGTGCCAAGAAATGCAAGGAGAAATTCGAAAACGTTTATAAGTACCACAGGAGAACCAAAGAAGGCCGATCTGGGAAACAAGAAGGAAAAACTTATCGATTTTTCGATGAACTTGAAGCTTTTGATCAACAAAACAATCACCCTTCAGTTCCACCAAAACCTCAAGTGCTCTTGTGGCCCAACAACCACCACCATCCAAACAACCCAACTGTAGTCTCTCATGTGATCACTTCTGTTGTTCCTCTTTCCTCAACACCAAACATGATGGCCACAACAAATGGTTCTCATCTAAATGGCTCTCACATCTCACCCCCACCAATAAATTCTTTGCCACCACAAGTTACAAAACCTGTGAATCTCTATCATCAAAATCTTAATGGTTTCAAGCCAAGCTTGGCAACAAGCAATCTGTTTTCGAGTTCTACTTCGTCTACCGCCTCAGATGAAGAGTTTCAAGTTCAACAGAGCGGTAAGAAAAAGAGGAAGTGGAAGTACTTCTTCAGAAGGCTGACCAAAGAGGTGCTAGAAAAGCAAGAGAAGCTGCAGGAGAAATTCTTAGAAGCTATAGCGAAAAGTGAGCACCAACGAACAGTGAGAGAAGAAGCTTGGAGAATGCAAGAGATGGCAAGATTAGATAAAGAACATCAAATTTTAGCCCAAGAGAGATCTTCAGCAGCAGCAAAAGATGCTGCGGTTATTGAATTCTTGCAAAAAGTTTCGGGACAACAAAATGTGACGAATAATATTCAAGCGATTGAGGTCAACCGCACAATACCATCTCGGCCTCAGCCATTGCCAGTACTAATGCCACCACCGCCTCCAGCTCCGGTGGCGGTGATCACAACAAGTTTCGAGGTTCCAAGACTGGATAAAGGCGATAATTCAACTATTCCTCCAGGGTCTACAAGATGGCCAAGAGTTGAAGTTGAGGCTTTGATAAATCTAAGGACATGTCTTGATGTGAGGTACCAAGAAGCTGGGCCTAAAGGTTCTCTTTGGGAGGAGATATCGGCGGGGATGAGGCGGCTTGGATACAATAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATCAATAAGTATTTCAAGAAGGTGAAGGAGAGCAGCAAAACAAGGCCTGAAGATTCAAAAACATGTCCATATTTTAACCAGCTGGAGGACTTGTACAGAAAGAAGAACATGAATAATTCTAGTCATGTTGGTTATGTGGAGAAACCCCTTCCTCAAGCAATATTGCAGCCATTGATCAAGGTCCAGCCAGATCAGCCGGTCTTCGAAGCTATCGAAAGGGAAAACGGGGATAAAAATGAAGAAGACGAAGACGGAGAAAGTACCGAGGAAGAAGATCATCTTGATCGTAGCAATGATGATGATCAAGATGAACAGATGGGGATAGTGACCAATTACAAAGAGTCATCAATGGAGATGGTGGAGTCATGA

Protein Analysis

591

Amino Acids

66.96

Weight (kDa)

6.77

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011817)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
Acc65I GGTACC 1 cut(s) 1296
AccB1I GGYRCC 1 cut(s) 1296
AccBSI CCGCTC 1 cut(s) 798
AccI GTMKAC 2 cut(s) 761, 1232
AclI AACGTT 1 cut(s) 363
AcoI YGGCCR 2 cut(s) 597, 1241
AcsI RAATTY 7 cut(s) 127, 178, 353, 652, 881, 978, 1031
AcuI CTGAAG 4 cut(s) 459, 814, 984, 1473
AfaI GTAC 6 cut(s) 374, 824, 1131, 1298, 1499, 1666
AfiI CCNNNNNNNGG 1 cut(s) 1489
AflIII ACRYGT 2 cut(s) 1280, 1466
AjnI CCWGG 2 cut(s) 216, 1225
Alw21I GWGCWC 3 cut(s) 62, 501, 912
Alw26I GTCTC 2 cut(s) 275, 550
AoxI GGCC 8 cut(s) 200, 394, 506, 597, 1112, 1241, 1310, 1448
ApeKI GCWGC 7 cut(s) 251, 871, 1004, 1007, 1019, 1437, 1570
ApoI RAATTY 7 cut(s) 127, 178, 353, 652, 881, 978, 1031
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
Asp700I GAANNNNTTC 2 cut(s) 780, 824
Asp718I GGTACC 1 cut(s) 1296
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 4 cut(s) 172, 507, 1310, 1585
AsuHPI GGTGA 5 cut(s) 323, 461, 630, 1177, 1438
AsuII TTCGAA 2 cut(s) 357, 1608
AvaII GGWCC 2 cut(s) 172, 1585
BalI TGGCCA 2 cut(s) 599, 1243
BanI GGYRCC 1 cut(s) 1296
BanII GRGCYC 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 806, 838
BbsI GAAGAC 4 cut(s) 147, 1597, 1653, 1659
Bbv12I GWGCWC 3 cut(s) 62, 501, 912
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 7 cut(s) 238, 858, 1006, 1016, 1019, 1449, 1582
BccI CCATC 8 cut(s) 192, 531, 589, 946, 1114, 1233, 1714, 1753
BceAI ACGGC 2 cut(s) 101, 166
BciT130I CCWGG 2 cut(s) 218, 1227
BciVI GTATCC 1 cut(s) 1355
BclI TGATCA 5 cut(s) 454, 555, 1167, 1578, 1705
BcoDI GTCTC 2 cut(s) 275, 550
BfaI CTAG 4 cut(s) 267, 308, 854, 1524
BfmI CTRYAG 4 cut(s) 6, 540, 872, 894
BfoI RGCGCY 1 cut(s) 224
BfuI GTATCC 1 cut(s) 1355
BglII AGATCT 1 cut(s) 995
BmcAI AGTACT 2 cut(s) 824, 1131
Bme1390I CCNGG 2 cut(s) 218, 1227
Bme18I GGWCC 2 cut(s) 172, 1585
BmgT120I GGNCC 4 cut(s) 172, 507, 1310, 1585
BmiI GGNNCC 3 cut(s) 173, 1188, 1298
BmrFI CCNGG 2 cut(s) 218, 1227
BmsI GCATC 2 cut(s) 238, 1006
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 4 cut(s) 147, 1597, 1653, 1659
BpmI CTGGAG 4 cut(s) 46, 1134, 1209, 1508
Bpu10I CCTNAGC 1 cut(s) 1116
Bpu14I TTCGAA 2 cut(s) 357, 1608
BpuEI CTTGAG 2 cut(s) 477, 1542
Bsa29I ATCGAT 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 1704
BsaJI CCNNGG 3 cut(s) 216, 1226, 1668
BsaWI WCCGGW 2 cut(s) 174, 1156
BsaXI ACNNNNNCTCC 4 cut(s) 1207, 1237, 1481, 1511
Bsc4I CCNNNNNNNGG 1 cut(s) 1489
Bse118I RCCGGY 1 cut(s) 1600
Bse1I ACTGG 2 cut(s) 1127, 1200
Bse3DI GCAATG 2 cut(s) 1121, 1702
Bse8I GATNNNNATC 1 cut(s) 1704
BseBI CCWGG 2 cut(s) 218, 1227
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 3 cut(s) 216, 1226, 1668
BseGI GGATG 4 cut(s) 35, 253, 523, 1353
BseJI GATNNNNATC 1 cut(s) 1704
BseLI CCNNNNNNNGG 1 cut(s) 1489
BseMI GCAATG 2 cut(s) 1121, 1702
BseMII CTCAG 3 cut(s) 158, 783, 1130
BseNI ACTGG 2 cut(s) 1127, 1200
BseRI GAGGAG 1 cut(s) 1346
BseXI GCAGC 7 cut(s) 238, 858, 1006, 1016, 1019, 1449, 1582
BseYI CCCAGC 1 cut(s) 1307
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 8 cut(s) 202, 396, 508, 599, 1114, 1243, 1312, 1450
BshNI GGYRCC 1 cut(s) 1296
BshVI ATCGAT 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 3 cut(s) 62, 501, 912
BsiSI CCGG 3 cut(s) 175, 1157, 1601
BslFI GGGAC 2 cut(s) 185, 1065
BslI CCNNNNNNNGG 1 cut(s) 1489
BsmAI GTCTC 2 cut(s) 275, 550
BsmFI GGGAC 2 cut(s) 185, 1065
BsmI GAATGC 1 cut(s) 948
BsnI GGCC 8 cut(s) 202, 396, 508, 599, 1114, 1243, 1312, 1450
Bsp119I TTCGAA 2 cut(s) 357, 1608
Bsp1286I GDGCHC 3 cut(s) 62, 501, 912
Bsp1407I TGTACA 1 cut(s) 1497
BspANI GGCC 8 cut(s) 202, 396, 508, 599, 1114, 1243, 1312, 1450
BspCNI CTCAG 3 cut(s) 159, 782, 1129
BspDI ATCGAT 1 cut(s) 427
BspHI TCATGA 2 cut(s) 103, 1769
BspLI GGNNCC 3 cut(s) 173, 1188, 1298
BspMAI CTGCAG 2 cut(s) 10, 876
BspT104I TTCGAA 2 cut(s) 357, 1608
BspT107I GGYRCC 1 cut(s) 1296
BsrBI CCGCTC 1 cut(s) 798
BsrDI GCAATG 2 cut(s) 1121, 1702
BsrFI RCCGGY 1 cut(s) 1600
BsrGI TGTACA 1 cut(s) 1497
BsrI ACTGG 2 cut(s) 1127, 1200
BssAI RCCGGY 1 cut(s) 1600
BssECI CCNNGG 3 cut(s) 216, 1226, 1668
Bst2UI CCWGG 2 cut(s) 218, 1227
Bst4CI ACNGT 3 cut(s) 237, 541, 922
Bst6I CTCTTC 1 cut(s) 771
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstAUI TGTACA 1 cut(s) 1497
BstBI TTCGAA 2 cut(s) 357, 1608
BstC8I GCNNGC 2 cut(s) 6, 48
BstDEI CTNAG 5 cut(s) 167, 769, 886, 1116, 1274
BstF5I GGATG 4 cut(s) 35, 253, 523, 1353
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 275, 550
BstMCI CGRYCG 1 cut(s) 239
BstNI CCWGG 2 cut(s) 218, 1227
BstNSI RCATGY 2 cut(s) 1284, 1470
BstPAI GACNNNNGTC 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 216, 1225
BstSFI CTRYAG 4 cut(s) 6, 540, 872, 894
BstV1I GCAGC 7 cut(s) 238, 858, 1006, 1016, 1019, 1449, 1582
BstV2I GAAGAC 4 cut(s) 147, 1597, 1653, 1659
BstX2I RGATCY 1 cut(s) 995
BstXI CCANNNNNNTGG 2 cut(s) 46, 1307
BstYI RGATCY 1 cut(s) 995
Bsu15I ATCGAT 1 cut(s) 427
BsuI GTATCC 1 cut(s) 1355
BsuRI GGCC 8 cut(s) 202, 396, 508, 599, 1114, 1243, 1312, 1450
BsuTUI ATCGAT 1 cut(s) 427
BtsCI GGATG 4 cut(s) 35, 253, 523, 1353
BtsIMutI CAGTG 1 cut(s) 927
Cac8I GCNNGC 2 cut(s) 6, 48
CciI TCATGA 2 cut(s) 103, 1769
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 1600
Cfr13I GGNCC 4 cut(s) 172, 507, 1310, 1585
ClaI ATCGAT 1 cut(s) 427
Csp6I GTAC 6 cut(s) 373, 823, 1130, 1297, 1498, 1665
CviAII CATG 9 cut(s) 104, 317, 551, 592, 1281, 1467, 1513, 1529, 1770
CviQI GTAC 6 cut(s) 373, 823, 1130, 1297, 1498, 1665
DdeI CTNAG 5 cut(s) 167, 769, 886, 1116, 1274
EaeI YGGCCR 2 cut(s) 597, 1241
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Ecl136II GAGCTC 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 1450
Eco24I GRGCYC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 1338
Eco47I GGWCC 2 cut(s) 172, 1585
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 4 cut(s) 459, 814, 984, 1473
EcoICRI GAGCTC 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 1031
EcoRII CCWGG 2 cut(s) 216, 1225
EcoRV GATATC 1 cut(s) 1338
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 9 cut(s) 107, 320, 554, 595, 1284, 1470, 1516, 1532, 1773
FalI AAGNNNNNCTT 8 cut(s) 707, 739, 812, 844, 1308, 1340, 1668, 1700
FaqI GGGAC 2 cut(s) 185, 1065
FatI CATG 9 cut(s) 103, 316, 550, 591, 1280, 1466, 1512, 1528, 1769
FauI CCCGC 1 cut(s) 1336
FbaI TGATCA 5 cut(s) 454, 555, 1167, 1578, 1705
FblI GTMKAC 2 cut(s) 761, 1232
FokI GGATG 4 cut(s) 22, 260, 510, 1360
FriOI GRGCYC 1 cut(s) 62
FspBI CTAG 4 cut(s) 267, 308, 854, 1524
GlaI GCGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 1311
GsuI CTGGAG 4 cut(s) 46, 1134, 1209, 1508
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 8 cut(s) 202, 396, 508, 599, 1114, 1243, 1312, 1450
HapII CCGG 3 cut(s) 175, 1157, 1601
HhaI GCGC 1 cut(s) 223
Hin1II CATG 9 cut(s) 107, 320, 554, 595, 1284, 1470, 1516, 1532, 1773
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 1 cut(s) 1093
HindII GTYRAC 1 cut(s) 1093
HindIII AAGCTT 3 cut(s) 447, 721, 933
HinfI GANTC 5 cut(s) 263, 685, 1457, 1745, 1766
HpaII CCGG 3 cut(s) 175, 1157, 1601
HphI GGTGA 5 cut(s) 323, 461, 630, 1177, 1438
Hpy166II GTNNAC 3 cut(s) 762, 1093, 1233
Hpy188I TCNGA 3 cut(s) 168, 772, 833
Hpy188III TCNNGA 9 cut(s) 92, 104, 260, 1050, 1286, 1420, 1685, 1709, 1770
Hpy8I GTNNAC 3 cut(s) 762, 1093, 1233
HpyAV CCTTC 9 cut(s) 65, 89, 386, 407, 483, 828, 1417, 1423, 1562
HpyCH4III ACNGT 3 cut(s) 237, 541, 922
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 8 cut(s) 8, 345, 874, 946, 1039, 1376, 1386, 1570
HpyF3I CTNAG 5 cut(s) 167, 769, 886, 1116, 1274
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 9 cut(s) 107, 320, 554, 595, 1284, 1470, 1516, 1532, 1773
HspAI GCGC 1 cut(s) 221
KpnI GGTACC 1 cut(s) 1300
Ksp22I TGATCA 5 cut(s) 454, 555, 1167, 1578, 1705
LmnI GCTCC 4 cut(s) 57, 65, 283, 1159
Lsp1109I GCAGC 7 cut(s) 238, 858, 1006, 1016, 1019, 1449, 1582
LweI GCATC 2 cut(s) 238, 1006
MaeI CTAG 4 cut(s) 267, 308, 854, 1524
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 4 cut(s) 260, 670, 1063, 1729
MbiI CCGCTC 1 cut(s) 798
MflI RGATCY 1 cut(s) 995
MhlI GDGCHC 3 cut(s) 62, 501, 912
MlsI TGGCCA 2 cut(s) 599, 1243
MluNI TGGCCA 2 cut(s) 599, 1243
MlyI GAGTC 2 cut(s) 257, 1754
Mox20I TGGCCA 2 cut(s) 599, 1243
MroXI GAANNNNTTC 2 cut(s) 780, 824
MscI TGGCCA 2 cut(s) 599, 1243
MseI TTAA 2 cut(s) 705, 1479
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 2 cut(s) 599, 1243
MspA1I CMGCKG 2 cut(s) 66, 1486
MspI CCGG 3 cut(s) 175, 1157, 1601
MspR9I CCNGG 2 cut(s) 218, 1227
Mva1269I GAATGC 1 cut(s) 948
MvaI CCWGG 2 cut(s) 218, 1227
NlaIII CATG 9 cut(s) 107, 320, 554, 595, 1284, 1470, 1516, 1532, 1773
NlaIV GGNNCC 3 cut(s) 173, 1188, 1298
NmeAIII GCCGAG 1 cut(s) 1090
NmuCI GTSAC 3 cut(s) 260, 1063, 1729
NspI RCATGY 2 cut(s) 1284, 1470
NspV TTCGAA 2 cut(s) 357, 1608
PagI TCATGA 2 cut(s) 103, 1769
PceI AGGCCT 1 cut(s) 1450
PciI ACATGT 2 cut(s) 1280, 1466
PcsI WCGNNNNNNNCGW 1 cut(s) 1614
PctI GAATGC 1 cut(s) 948
PdmI GAANNNNTTC 2 cut(s) 780, 824
PfeI GAWTC 2 cut(s) 685, 1457
PleI GAGTC 2 cut(s) 257, 1753
PpsI GAGTC 2 cut(s) 257, 1753
PscI ACATGT 2 cut(s) 1280, 1466
PshAI GACNNNNGTC 1 cut(s) 267
PsiI TTATAA 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 62
Psp1406I AACGTT 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 216, 1225
PspFI CCCAGC 1 cut(s) 1307
PspGI CCWGG 2 cut(s) 216, 1225
PspN4I GGNNCC 3 cut(s) 173, 1188, 1298
PspPI GGNCC 4 cut(s) 172, 507, 1310, 1585
PstI CTGCAG 2 cut(s) 10, 876
PsuI RGATCY 1 cut(s) 995
PvuII CAGCTG 1 cut(s) 1486
RsaI GTAC 6 cut(s) 374, 824, 1131, 1298, 1499, 1666
RsaNI GTAC 6 cut(s) 373, 823, 1130, 1297, 1498, 1665
RseI CAYNNNNRTG 1 cut(s) 621
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 705, 1479
Sau96I GGNCC 4 cut(s) 172, 507, 1310, 1585
ScaI AGTACT 2 cut(s) 824, 1131
SchI GAGTC 2 cut(s) 257, 1754
ScrFI CCNGG 2 cut(s) 218, 1227
SduI GDGCHC 3 cut(s) 62, 501, 912
SfaNI GCATC 2 cut(s) 238, 1006
SfcI CTRYAG 4 cut(s) 6, 540, 872, 894
SfuI TTCGAA 2 cut(s) 357, 1608
SinI GGWCC 2 cut(s) 172, 1585
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 2 cut(s) 492, 1557
SmoI CTYRAG 2 cut(s) 492, 1557
SseBI AGGCCT 1 cut(s) 1450
SspI AATATT 2 cut(s) 1075, 1566
SspMI CTAG 4 cut(s) 267, 308, 854, 1524
SstI GAGCTC 1 cut(s) 62
StuI AGGCCT 1 cut(s) 1450
StyD4I CCNGG 2 cut(s) 216, 1225
TaaI ACNGT 3 cut(s) 237, 541, 922
TaiI ACGT 1 cut(s) 366
TaqI TCGA 7 cut(s) 357, 427, 435, 746, 1182, 1608, 1617
TatI WGTACW 3 cut(s) 822, 1129, 1497
TauI GCSGC 3 cut(s) 53, 69, 1357
TfiI GAWTC 2 cut(s) 685, 1457
Tru1I TTAA 2 cut(s) 705, 1479
Tru9I TTAA 2 cut(s) 705, 1479
TscAI CASTG 1 cut(s) 927
TseFI GTSAC 3 cut(s) 260, 1063, 1729
TseI GCWGC 7 cut(s) 251, 871, 1004, 1007, 1019, 1437, 1570
Tsp45I GTSAC 3 cut(s) 260, 1063, 1729
TspDTI ATGAA 6 cut(s) 120, 453, 789, 1529, 1656, 1728
TspGWI ACGGA 1 cut(s) 1671
TspRI CASTG 1 cut(s) 927
VpaK11BI GGWCC 2 cut(s) 172, 1585
XapI RAATTY 7 cut(s) 127, 178, 353, 652, 881, 978, 1031
XceI RCATGY 2 cut(s) 1284, 1470
XmiI GTMKAC 2 cut(s) 761, 1232
XmnI GAANNNNTTC 2 cut(s) 780, 824
XspI CTAG 4 cut(s) 267, 308, 854, 1524
ZrmI AGTACT 2 cut(s) 824, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.