Rorug06G0093300
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011817
Physical Location & Seq
Reverse (-)
12434310 .. 12435618
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0093300.1

Sequence Viewer

Length: 1041 bp
ATGCAATCTCTTCGTCTTCCTCTCTTTCACTTCCTCCACCGCACCACCTCACCACTAAAGCCAACAAGACCCTTCTTCCAAATCCGCCTCCACACTCGTTTCCAAGCCTCATCGAATCATCATCCATCGCAAACGACACAACCCATCAAAAACGACACCGTCACTCACGAGTTCCGCTTCTTCCGGGTATACGAATCCGGCCGGGTCGAGAAATTCCACCAAACCCATAAAATCCCACCCTCCGACGACCCGATTTCCGGAGTCCGATCCAAAGACGTCGTCATCTCCTCCGAACCCGCCATCTCAGCCCGCATCTTCCTCCCCTTGATCCGCGACCCGACCCGGAAACTCCCCGTCCTCTTCCACGTCCACGGCGGCGGCTTCTCCTTCGAATCCGCATTCTCCCCTCACATACACAACTACGTCAGGACTCTATCCTCCGAGGCTGACGTCATCGCCGTCTCGGTCGAGTACAGGCTGGCACCGGAGCACCCGATCCCGGCCTGCTACGACGATTCATGGGCCGCTCTGAGATGGGTCGCGGATCATCGTATCGGAAACGGACCCGAGCCCTGGTTGAACAATTACGCCGACTTTGACAGGGTCTTTGTGGCCGGGGACAGCGCCGGAGGAAACATTTCGCATTATCTGGCGGCTCGGGTCGGGTCGTTGGGTTTACCCGGAGTGAAATTAGTCGGGGCGGTTCTGGTGCATCCGTATTTTGGTGGGACTGATGATGATGCCATGTGGCTGTACATGTGTGGCGATAACAATGGGTTGCAGGATAGGAGGTTGAGGCCTAGCGTAGAGGATCTGAGAAGGCTTGGGTGTGAGAAGGTGTTGGTGTTTGTTGCTGAGAAGGATCATTTGAATGGTGTGGGGAAGAAATATGTGGAGGAATTGAAGAAGAGTGGGTGGAAAGGGAGTGTGGAGATTGTAGAGAATGAAGGAGAGGATCATTGCTTCCATTTAGAGGATCTCAACTATGAGAAAGCTGTGGCTTTGATTAGGAGGTTTGCTTCATTCATTAAGCACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

346

Amino Acids

39.2

Weight (kDa)

7.36

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 104 - 217 4.4e-07 Carboxylesterase family
BD-FAE PF20434 114 - 218 3.6e-10 BD-FAE
Abhydrolase_3 PF07859 120 - 323 4.6e-44 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76890
fragaria_vesca FvH4_2g13840
malus_domestica MD05G1024500.v1.1 MD10G1025200.v1.1
prunus_persica Prupe.8G028800_v2.0.a1 Prupe.8G028800_v2.0.a1
pyrus_communis pycom05g01570 pycom10g01660
rosa_chinensis RchiOBHm_Chr6g0275491
rosa_laevigata RLG00000013460
rosa_multiflora Rmu_sc0006527.1_g000008 Rmu_sc0033082.1_g000001
rosa_roxburghii Rroxscaffold_7G00193230
rosa_rugosa Rorug06G0093300
rosa_samantha Rh6AG206000 Rh6BG209000 Rh6CG211200 Rh6DG201500
rosa_wichuraiana Rw6G017870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 279, 453
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 527
AccI GTMKAC 1 cut(s) 189
AccII CGCG 2 cut(s) 333, 542
AccIII TCCGGA 1 cut(s) 257
AclWI GGATC 8 cut(s) 261, 322, 490, 552, 819, 870, 963, 984
AcoI YGGCCR 2 cut(s) 199, 612
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 2 cut(s) 276, 450
AfaI GTAC 2 cut(s) 473, 755
AfiI CCNNNNNNNGG 5 cut(s) 257, 499, 573, 722, 973
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 3 cut(s) 580, 871, 904
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 1 cut(s) 572
AluBI AGCT 1 cut(s) 995
AluI AGCT 1 cut(s) 995
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 8 cut(s) 261, 322, 490, 552, 819, 870, 963, 984
Ama87I CYCGRG 2 cut(s) 566, 657
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 5 cut(s) 199, 501, 522, 612, 797
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 4 cut(s) 264, 296, 590, 622
Asp700I GAANNNNTTC 1 cut(s) 637
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 2 cut(s) 522, 563
AsuC2I CCSGG 6 cut(s) 185, 203, 343, 500, 616, 681
AsuHPI GGTGA 1 cut(s) 42
AsuII TTCGAA 1 cut(s) 390
AvaI CYCGRG 2 cut(s) 566, 657
AvaII GGWCC 1 cut(s) 563
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 573
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 492
BccI CCATC 4 cut(s) 133, 152, 308, 528
BceAI ACGGC 2 cut(s) 388, 443
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 574
BcnI CCSGG 6 cut(s) 185, 203, 343, 500, 616, 681
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 1 cut(s) 801
BfoI RGCGCY 1 cut(s) 627
BisI GCNGC 4 cut(s) 376, 379, 525, 654
BlsI GCNGC 4 cut(s) 377, 380, 526, 655
Bme1390I CCNGG 7 cut(s) 185, 203, 343, 500, 574, 616, 681
Bme18I GGWCC 1 cut(s) 563
BmeT110I CYCGRG 2 cut(s) 566, 657
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 522, 563
BmiI GGNNCC 2 cut(s) 483, 565
BmrFI CCNGG 7 cut(s) 185, 203, 343, 500, 574, 616, 681
BmsI GCATC 3 cut(s) 321, 721, 730
BpiI GAAGAC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 390
BpuMI CCSGG 6 cut(s) 185, 203, 343, 500, 616, 681
BsaHI GRCGYC 2 cut(s) 276, 450
BsaJI CCNNGG 4 cut(s) 370, 441, 572, 615
BsaWI WCCGGW 2 cut(s) 257, 484
Bsc4I CCNNNNNNNGG 5 cut(s) 257, 499, 573, 722, 973
Bse1I ACTGG 1 cut(s) 1036
Bse3DI GCAATG 1 cut(s) 958
BseAI TCCGGA 1 cut(s) 257
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 4 cut(s) 370, 441, 572, 615
BseGI GGATG 2 cut(s) 121, 712
BseLI CCNNNNNNNGG 5 cut(s) 257, 499, 573, 722, 973
BseMI GCAATG 1 cut(s) 958
BseMII CTCAG 4 cut(s) 318, 521, 806, 846
BseNI ACTGG 1 cut(s) 1036
BseRI GAGGAG 1 cut(s) 277
BseX3I CGGCCG 1 cut(s) 199
Bsh1236I CGCG 2 cut(s) 333, 542
Bsh1285I CGRYCG 2 cut(s) 202, 468
BshFI GGCC 5 cut(s) 201, 503, 524, 614, 799
BshNI GGYRCC 1 cut(s) 481
BsiEI CGRYCG 2 cut(s) 202, 468
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 2 cut(s) 566, 657
BslFI GGGAC 2 cut(s) 632, 742
BslI CCNNNNNNNGG 5 cut(s) 257, 499, 573, 722, 973
BsmAI GTCTC 1 cut(s) 466
BsmBI CGTCTC 1 cut(s) 466
BsmFI GGGAC 2 cut(s) 632, 742
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 5 cut(s) 201, 503, 524, 614, 799
BsoBI CYCGRG 2 cut(s) 566, 657
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 492, 573
Bsp13I TCCGGA 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 753
Bsp143I GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
BspANI GGCC 5 cut(s) 201, 503, 524, 614, 799
BspCNI CTCAG 4 cut(s) 317, 522, 807, 847
BspEI TCCGGA 1 cut(s) 257
BspFNI CGCG 2 cut(s) 333, 542
BspLI GGNNCC 2 cut(s) 483, 565
BspPI GGATC 8 cut(s) 261, 322, 490, 552, 819, 870, 963, 984
BspT104I TTCGAA 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 481
BsrBI CCGCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 958
BsrGI TGTACA 1 cut(s) 753
BsrI ACTGG 1 cut(s) 1036
BssECI CCNNGG 4 cut(s) 370, 441, 572, 615
BssMI GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
BssNAI GTATAC 1 cut(s) 190
BssNI GRCGYC 2 cut(s) 276, 450
BssSI CACGAG 1 cut(s) 167
Bst1107I GTATAC 1 cut(s) 190
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 3 cut(s) 15, 365, 902
BstACI GRCGYC 2 cut(s) 276, 450
BstAUI TGTACA 1 cut(s) 753
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 310, 480, 505
BstDEI CTNAG 4 cut(s) 304, 530, 815, 855
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 121, 712
BstFNI CGCG 2 cut(s) 333, 542
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 8 cut(s) 269, 330, 498, 547, 814, 865, 958, 979
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
BstMCI CGRYCG 2 cut(s) 202, 468
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 574
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 7 cut(s) 183, 201, 341, 498, 572, 614, 679
BstUI CGCG 2 cut(s) 333, 542
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 2 cut(s) 811, 976
BstYI RGATCY 2 cut(s) 811, 976
BstZ17I GTATAC 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 5 cut(s) 201, 503, 524, 614, 799
BtgI CCRYGG 1 cut(s) 370
BtgZI GCGATG 2 cut(s) 111, 439
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 121, 712
Cac8I GCNNGC 3 cut(s) 310, 480, 505
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 2 cut(s) 522, 563
Csp6I GTAC 2 cut(s) 472, 754
CviAII CATG 3 cut(s) 519, 745, 757
CviQI GTAC 2 cut(s) 472, 754
DdeI CTNAG 4 cut(s) 304, 530, 815, 855
DpnI GATC 8 cut(s) 268, 329, 497, 546, 813, 864, 957, 978
DpnII GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
EaeI YGGCCR 2 cut(s) 199, 612
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 3 cut(s) 15, 365, 902
EarI CTCTTC 3 cut(s) 15, 365, 902
EciI GGCGGA 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 563
Eco52I CGGCCG 1 cut(s) 199
Eco88I CYCGRG 2 cut(s) 566, 657
EcoRII CCWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 573
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 3 cut(s) 522, 748, 760
FaiI YATR 8 cut(s) 190, 228, 413, 520, 746, 758, 891, 987
FaqI GGGAC 2 cut(s) 632, 742
FatI CATG 3 cut(s) 518, 744, 756
FauI CCCGC 2 cut(s) 304, 317
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 376, 379, 525, 654
FokI GGATG 2 cut(s) 108, 699
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 4 cut(s) 376, 379, 525, 654
FspBI CTAG 1 cut(s) 801
GlaI GCGC 1 cut(s) 625
GluI GCNGC 4 cut(s) 376, 379, 525, 654
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 5 cut(s) 201, 503, 524, 614, 799
HhaI GCGC 1 cut(s) 626
Hin1I GRCGYC 2 cut(s) 276, 450
Hin1II CATG 3 cut(s) 522, 748, 760
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HinfI GANTC 6 cut(s) 115, 194, 261, 392, 430, 515
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 3 cut(s) 190, 370, 677
Hpy188I TCNGA 7 cut(s) 244, 266, 292, 442, 531, 557, 816
Hpy188III TCNNGA 4 cut(s) 167, 208, 258, 427
Hpy8I GTNNAC 3 cut(s) 190, 370, 677
Hpy99I CGWCG 3 cut(s) 248, 281, 515
HpyAV CCTTC 6 cut(s) 82, 397, 813, 829, 853, 941
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 4 cut(s) 276, 366, 423, 450
HpyCH4V TGCA 3 cut(s) 4, 712, 781
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 4 cut(s) 304, 530, 815, 855
HpySE526I ACGT 4 cut(s) 276, 366, 423, 450
Hsp92I GRCGYC 2 cut(s) 276, 450
Hsp92II CATG 3 cut(s) 522, 748, 760
HspAI GCGC 1 cut(s) 624
Kpn2I TCCGGA 1 cut(s) 257
Kzo9I GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
LmnI GCTCC 1 cut(s) 487
LweI GCATC 3 cut(s) 321, 721, 730
MaeI CTAG 1 cut(s) 801
MaeII ACGT 4 cut(s) 276, 366, 423, 450
MaeIII GTNAC 1 cut(s) 160
MalI GATC 8 cut(s) 268, 329, 497, 546, 813, 864, 957, 978
MbiI CCGCTC 1 cut(s) 527
MboI GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
MboII GAAGA 8 cut(s) 8, 67, 172, 307, 352, 895, 916, 919
MflI RGATCY 2 cut(s) 811, 976
MhlI GDGCHC 2 cut(s) 492, 573
MluCI AATT 4 cut(s) 212, 583, 689, 899
MlyI GAGTC 2 cut(s) 270, 424
MmeI TCCRAC 1 cut(s) 267
MroI TCCGGA 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 637
MseI TTAA 1 cut(s) 1029
MslI CAYNNNNRTG 1 cut(s) 870
MspR9I CCNGG 7 cut(s) 185, 203, 343, 500, 574, 616, 681
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 1 cut(s) 574
MvnI CGCG 2 cut(s) 333, 542
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 6 cut(s) 185, 203, 343, 500, 616, 681
NdeII GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
NlaIII CATG 3 cut(s) 522, 748, 760
NlaIV GGNNCC 2 cut(s) 483, 565
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 760
NspV TTCGAA 1 cut(s) 390
PceI AGGCCT 1 cut(s) 799
PciI ACATGT 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 637
PfeI GAWTC 4 cut(s) 115, 194, 392, 515
PflFI GACNNNGTC 3 cut(s) 158, 278, 602
PkrI GCNGC 4 cut(s) 377, 380, 526, 655
PleI GAGTC 2 cut(s) 269, 424
PpsI GAGTC 2 cut(s) 269, 424
PscI ACATGT 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 572
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 2 cut(s) 483, 565
PspPI GGNCC 2 cut(s) 522, 563
PsuI RGATCY 2 cut(s) 811, 976
PsyI GACNNNGTC 3 cut(s) 158, 278, 602
RsaI GTAC 2 cut(s) 473, 755
RsaNI GTAC 2 cut(s) 472, 754
RseI CAYNNNNRTG 1 cut(s) 870
SaqAI TTAA 1 cut(s) 1029
SatI GCNGC 4 cut(s) 376, 379, 525, 654
Sau3AI GATC 8 cut(s) 266, 327, 495, 544, 811, 862, 955, 976
Sau96I GGNCC 2 cut(s) 522, 563
SchI GAGTC 2 cut(s) 270, 424
ScrFI CCNGG 7 cut(s) 185, 203, 343, 500, 574, 616, 681
SduI GDGCHC 2 cut(s) 492, 573
SetI ASST 9 cut(s) 50, 279, 369, 426, 453, 794, 840, 997, 1016
SfaNI GCATC 3 cut(s) 321, 721, 730
SfuI TTCGAA 1 cut(s) 390
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 870
Sse9I AATT 4 cut(s) 212, 583, 689, 899
SseBI AGGCCT 1 cut(s) 799
SspMI CTAG 1 cut(s) 801
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 7 cut(s) 183, 201, 341, 498, 572, 614, 679
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 4 cut(s) 279, 369, 426, 453
TaqI TCGA 4 cut(s) 113, 207, 390, 468
TaqII GACCGA 1 cut(s) 454
TasI AATT 4 cut(s) 212, 583, 689, 899
TatI WGTACW 2 cut(s) 471, 753
TauI GCSGC 4 cut(s) 378, 381, 527, 656
TfiI GAWTC 4 cut(s) 115, 194, 392, 515
Tru1I TTAA 1 cut(s) 1029
Tru9I TTAA 1 cut(s) 1029
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 4 cut(s) 507, 960, 1011, 1015
TspGWI ACGGA 2 cut(s) 576, 705
Tth111I GACNNNGTC 3 cut(s) 158, 278, 602
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 760
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 637
XspI CTAG 1 cut(s) 801
ZraI GACGTC 2 cut(s) 277, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.