Prupe.8G032500_v2.0.a1

Protein of unknown function (DUF677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017725
Physical Location & Seq
Forward (+)
3056138 .. 3058192
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G032500.1

Sequence Viewer

Length: 1095 bp
ATGTGGGCAAAACTTAAAGCTTCTTCAAAGATTGCGAAAGGGAAGGAAGTGATAAGACAAGTTCGAAAAAGCTTCAATCTGAACGAGGAGTACCTGAGTGCATTTAGAACCAAATCATATGCAGACTTCTACAATAAGGCTCAATTGCTTGTAAACGAGCCATCATCTTCTTTTAGTTACAGCCATGATCACAAATTCTCAGAAGTCCTCCTAGAACCTGGTCAAGAAGCCATACCTGGTATTCTTGAATCCGAAATTCTTTCGAAGGTGCCTGAATTGAAAGGCCTTATGCTCAACTACTTTGACATCAGTGCTGAGGCCTCAAAAATATGTAGCCACCTCTTAAAAAGCATCAAACGGATCCAATCCAACTACCGCGTCGTTCAACAAGCACTTGATAAATTTGAGGACTACTCCCCGAACAAAATCAAATCGTTTGTTTCTGAGCTAAACTTGTTCATTCTCCAAAACAACATTAACCCTTTCTCAAATCCTAATAACCATGACTTTGAGCTCATTCATGACAAGTACTCGTTGGTTTTGCACCACCTGAAGTTGATGAGAAAAAAGGTGTCGCGGAAGATTAAGCTCATCAAATTTTTCAAAAAGGCTTCTGGGATTTGCATAACAGCAGCTTGCAGTTTGATTGCTATATCAGCTGTTGTTCTAGCCGTACATACTCTCACTGCCTTGCTCATGGGACCAGCCATCTTCAGCTGCCCATTTAAGCGCTTAAAGAAAAAGTTGAGTAGTATCCCGTTTTTGAGAAGTAGGATTCTTACCAAAGTCGGAGAGCAACTTGATGTAGCCGCCAAGGGGACTTATATTCTGAACAGGGATTTCGACACAATAAGCCGACTTGTGGCAAGGATTCATGATGAGGTTGAACACAACAAGTCAATGATTCGGTTCTGCTTGGAGAGGAGAGAGGATAAGTTTTCGTTGCAAGTTGTGAAGGAGCTTAAGAAGAGTGATATTGGATTCAGAAAGCAAGTGGAGGAGCTTCAAGAGCATGTGTATTTGTGTCTTGTGACTATCAATAGAGCTAGAGCTTTGGTTATCAAGGAGATGAAAAAATCTTGTGTAGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

365

Amino Acids

41.78

Weight (kDa)

9.63

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017725)

Species Orthologous Gene IDs
malus_domestica MD10G1026400.v1.1
prunus_persica Prupe.8G032500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0275241
rosa_laevigata RLG00000013483
rosa_multiflora Rmu_sc0022221.1_g000007 Rmu_ssc0000041.1_g000027
rosa_roxburghii Rroxscaffold_7G00193520
rosa_rugosa Rorug06G0090500
rosa_samantha Rh6AG203800 Rh6CG209300 Rh6DG199300
rosa_wichuraiana Rw6G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 1086
AccII CGCG 2 cut(s) 378, 577
AciI CCGC 3 cut(s) 376, 577, 810
AclWI GGATC 2 cut(s) 355, 368
AcsI RAATTY 4 cut(s) 194, 255, 401, 596
AcuI CTGAAG 2 cut(s) 572, 697
AfaI GTAC 3 cut(s) 92, 530, 675
AfeI AGCGCT 1 cut(s) 731
AfiI CCNNNNNNNGG 2 cut(s) 816, 862
AflII CTTAAG 1 cut(s) 962
AgsI TTSAA 8 cut(s) 27, 76, 248, 280, 386, 604, 887, 1007
AjnI CCWGG 2 cut(s) 217, 235
Alw21I GWGCWC 1 cut(s) 516
AlwI GGATC 2 cut(s) 355, 368
Aor51HI AGCGCT 1 cut(s) 731
AoxI GGCC 2 cut(s) 283, 318
ApeKI GCWGC 2 cut(s) 632, 717
ApoI RAATTY 4 cut(s) 194, 255, 401, 596
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 1 cut(s) 701
AsuII TTCGAA 2 cut(s) 64, 263
AvaII GGWCC 1 cut(s) 701
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 516
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 644, 704
BccI CCATC 2 cut(s) 169, 716
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 2 cut(s) 219, 237
BciVI GTATCC 1 cut(s) 764
BclI TGATCA 1 cut(s) 187
BfaI CTAG 3 cut(s) 212, 668, 1047
BfoI RGCGCY 1 cut(s) 733
BfrI CTTAAG 1 cut(s) 962
BfuI GTATCC 1 cut(s) 764
BisI GCNGC 3 cut(s) 633, 718, 810
BlsI GCNGC 3 cut(s) 634, 719, 811
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 2 cut(s) 219, 237
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 3 cut(s) 270, 362, 702
BmrFI CCNGG 2 cut(s) 219, 237
BmsI GCATC 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 398, 430
Bpu10I CCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 2 cut(s) 64, 263
BsaJI CCNNGG 1 cut(s) 813
Bsc4I CCNNNNNNNGG 2 cut(s) 816, 862
BseBI CCWGG 2 cut(s) 219, 237
BseDI CCNNGG 1 cut(s) 813
BseLI CCNNNNNNNGG 2 cut(s) 816, 862
BseMII CTCAG 4 cut(s) 86, 213, 306, 435
BseRI GAGGAG 3 cut(s) 101, 937, 1013
BseXI GCAGC 2 cut(s) 644, 704
Bsh1236I CGCG 2 cut(s) 378, 577
BshFI GGCC 2 cut(s) 285, 320
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 516
BslFI GGGAC 2 cut(s) 714, 832
BslI CCNNNNNNNGG 2 cut(s) 816, 862
BsmFI GGGAC 2 cut(s) 714, 832
BsnI GGCC 2 cut(s) 285, 320
Bsp119I TTCGAA 2 cut(s) 64, 263
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 187, 360
BspACI CCGC 3 cut(s) 376, 577, 810
BspANI GGCC 2 cut(s) 285, 320
BspCNI CTCAG 4 cut(s) 87, 212, 307, 436
BspFNI CGCG 2 cut(s) 378, 577
BspHI TCATGA 2 cut(s) 520, 874
BspLI GGNNCC 3 cut(s) 270, 362, 702
BspPI GGATC 2 cut(s) 355, 368
BspT104I TTCGAA 2 cut(s) 64, 263
BspT107I GGYRCC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 962
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 2 cut(s) 187, 360
BssT1I CCWWGG 1 cut(s) 813
Bst2UI CCWGG 2 cut(s) 219, 237
Bst6I CTCTTC 1 cut(s) 962
BstAFI CTTAAG 1 cut(s) 962
BstBI TTCGAA 2 cut(s) 64, 263
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 4 cut(s) 95, 199, 315, 444
BstFNI CGCG 2 cut(s) 378, 577
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 2 cut(s) 190, 363
BstMBI GATC 2 cut(s) 187, 360
BstMWI GCNNNNNNNGC 2 cut(s) 656, 1009
BstNI CCWGG 2 cut(s) 219, 237
BstNSI RCATGY 1 cut(s) 1016
BstSCI CCNGG 2 cut(s) 217, 235
BstUI CGCG 2 cut(s) 378, 577
BstV1I GCAGC 2 cut(s) 644, 704
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 2 cut(s) 285, 320
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 316, 684
Cac8I GCNNGC 1 cut(s) 637
CciI TCATGA 2 cut(s) 520, 874
CfoI GCGC 1 cut(s) 732
Cfr13I GGNCC 1 cut(s) 701
CseI GACGC 1 cut(s) 367
CsiI ACCWGGT 2 cut(s) 217, 235
Csp6I GTAC 3 cut(s) 91, 529, 674
CviAII CATG 6 cut(s) 185, 503, 521, 697, 875, 1013
CviQI GTAC 3 cut(s) 91, 529, 674
DdeI CTNAG 4 cut(s) 95, 199, 315, 444
DpnI GATC 2 cut(s) 189, 362
DpnII GATC 2 cut(s) 187, 360
Eam1104I CTCTTC 1 cut(s) 962
EarI CTCTTC 1 cut(s) 962
Ecl136II GAGCTC 1 cut(s) 514
Eco130I CCWWGG 1 cut(s) 813
Eco147I AGGCCT 2 cut(s) 285, 320
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 701
Eco47III AGCGCT 1 cut(s) 731
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 2 cut(s) 572, 697
EcoICRI GAGCTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 217, 235
EcoT14I CCWWGG 1 cut(s) 813
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 813
FaeI CATG 6 cut(s) 188, 506, 524, 700, 878, 1016
FaqI GGGAC 2 cut(s) 714, 832
FatI CATG 6 cut(s) 184, 502, 520, 696, 874, 1012
FauNDI CATATG 1 cut(s) 118
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 1086
Fnu4HI GCNGC 3 cut(s) 633, 718, 810
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 3 cut(s) 633, 718, 810
FspBI CTAG 3 cut(s) 212, 668, 1047
GlaI GCGC 1 cut(s) 731
GluI GCNGC 3 cut(s) 633, 718, 810
HaeII RGCGCY 1 cut(s) 733
HaeIII GGCC 2 cut(s) 285, 320
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 732
Hin1II CATG 6 cut(s) 188, 506, 524, 700, 878, 1016
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HindIII AAGCTT 2 cut(s) 18, 70
HinfI GANTC 5 cut(s) 248, 775, 871, 904, 981
Hpy166II GTNNAC 2 cut(s) 154, 1087
Hpy188I TCNGA 7 cut(s) 81, 202, 253, 445, 791, 831, 986
Hpy188III TCNNGA 5 cut(s) 224, 245, 521, 875, 1007
Hpy8I GTNNAC 2 cut(s) 154, 1087
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 37, 259, 949
HpyCH4V TGCA 6 cut(s) 101, 122, 544, 624, 639, 946
HpyF10VI GCNNNNNNNGC 2 cut(s) 656, 1009
HpyF3I CTNAG 4 cut(s) 95, 199, 315, 444
Hsp92II CATG 6 cut(s) 188, 506, 524, 700, 878, 1016
HspAI GCGC 1 cut(s) 730
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 187, 360
LmnI GCTCC 2 cut(s) 958, 1000
Lsp1109I GCAGC 2 cut(s) 644, 704
LweI GCATC 1 cut(s) 360
MabI ACCWGGT 2 cut(s) 217, 235
MaeI CTAG 3 cut(s) 212, 668, 1047
MaeIII GTNAC 2 cut(s) 176, 1030
MalI GATC 2 cut(s) 189, 362
MboI GATC 2 cut(s) 187, 360
MboII GAAGA 5 cut(s) 15, 159, 592, 703, 979
MfeI CAATTG 2 cut(s) 143, 1090
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 7 cut(s) 143, 194, 255, 275, 401, 596, 1090
MmeI TCCRAC 2 cut(s) 393, 769
MseI TTAA 7 cut(s) 15, 344, 477, 585, 726, 734, 963
MspA1I CMGCKG 2 cut(s) 659, 717
MspCI CTTAAG 1 cut(s) 962
MspR9I CCNGG 2 cut(s) 219, 237
MunI CAATTG 2 cut(s) 143, 1090
MvaI CCWGG 2 cut(s) 219, 237
MvnI CGCG 2 cut(s) 378, 577
MwoI GCNNNNNNNGC 2 cut(s) 656, 1009
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 187, 360
NlaIII CATG 6 cut(s) 188, 506, 524, 700, 878, 1016
NlaIV GGNNCC 3 cut(s) 270, 362, 702
NmuCI GTSAC 1 cut(s) 1030
NspI RCATGY 1 cut(s) 1016
NspV TTCGAA 2 cut(s) 64, 263
PagI TCATGA 2 cut(s) 520, 874
PceI AGGCCT 2 cut(s) 285, 320
PfeI GAWTC 5 cut(s) 248, 775, 871, 904, 981
PkrI GCNGC 3 cut(s) 634, 719, 811
Psp124BI GAGCTC 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 217, 235
PspGI CCWGG 2 cut(s) 217, 235
PspN4I GGNNCC 3 cut(s) 270, 362, 702
PspPI GGNCC 1 cut(s) 701
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
PsuI RGATCY 1 cut(s) 360
PvuII CAGCTG 2 cut(s) 659, 717
RsaI GTAC 3 cut(s) 92, 530, 675
RsaNI GTAC 3 cut(s) 91, 529, 674
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 7 cut(s) 15, 344, 477, 585, 726, 734, 963
SatI GCNGC 3 cut(s) 633, 718, 810
Sau3AI GATC 2 cut(s) 187, 360
Sau96I GGNCC 1 cut(s) 701
ScaI AGTACT 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 219, 237
SduI GDGCHC 1 cut(s) 516
SexAI ACCWGGT 2 cut(s) 217, 235
SfaNI GCATC 1 cut(s) 360
SfuI TTCGAA 2 cut(s) 64, 263
SinI GGWCC 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
Sse9I AATT 7 cut(s) 143, 194, 255, 275, 401, 596, 1090
SseBI AGGCCT 2 cut(s) 285, 320
SsiI CCGC 3 cut(s) 376, 577, 810
SspMI CTAG 3 cut(s) 212, 668, 1047
SstI GAGCTC 1 cut(s) 516
StuI AGGCCT 2 cut(s) 285, 320
StyD4I CCNGG 2 cut(s) 217, 235
StyI CCWWGG 1 cut(s) 813
TaqI TCGA 3 cut(s) 64, 263, 843
TasI AATT 7 cut(s) 143, 194, 255, 275, 401, 596, 1090
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 812
TfiI GAWTC 5 cut(s) 248, 775, 871, 904, 981
Tru1I TTAA 7 cut(s) 15, 344, 477, 585, 726, 734, 963
Tru9I TTAA 7 cut(s) 15, 344, 477, 585, 726, 734, 963
TscAI CASTG 2 cut(s) 316, 691
TseFI GTSAC 1 cut(s) 1030
TseI GCWGC 2 cut(s) 632, 717
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 4 cut(s) 448, 509, 863, 1085
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 2 cut(s) 316, 691
Vha464I CTTAAG 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 701
XapI RAATTY 4 cut(s) 194, 255, 401, 596
XceI RCATGY 1 cut(s) 1016
XmiI GTMKAC 1 cut(s) 1086
XspI CTAG 3 cut(s) 212, 668, 1047
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.