Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Reverse (-)

12060140 .. 12061609

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTCGACATGAATAAGAAGGAAAAATTCTTCAGGAGTCCCTCAAGTCCGATCCCTAACACCAAGCGAAAATTAATTGATGATTTTGAACAGAAAGTTGCAGCTGGTTGTAGTTCTCAAGATCATGAAGGCTACAAATGTAAGAAAACGAAGCCTAATTATCATGAAAAGCCTTCCATAAGAAACCAAGTTCAAGATATCCTGGCAAATCTAGAAGCCAAAAGTCCATTCTTTTTGAAGTGTATGATACCTTCTGATGTTGTCAAGAACAAGTCTAGTTTGACGTTGCCCAAGCAATTCTGCATTGAACATTTGCAAAAACATGATAGAAAATTAATCTTGGAACATGAAAGTGGGAGAGAATATATAGTGAATTATCTTGGGAAATATAGACGACTGAGTGGTGGGTGGAGAAGGTTTTGTACCGATAGCAGATTACTTGAAGGTGATCTCTTAGTTTTCCAGTGGGTGAGGCTTTTGAGGTTTAAGGTTTACAAGGTCGAACAAGAGACTCTGAATGAAGTTAATGCTGCCTTTACCCTGTTGGGGTTGAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

186

Amino Acids

21.75

Weight (kDa)

9.48

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	78 - 158	2.4e-17	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	5 cut(s)	89, 194, 238, 308, 443
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	101, 530
ApoI	RAATTY	1 cut(s)	26
AseI	ATTAAT	2 cut(s)	74, 335
AsuHPI	GGTGA	2 cut(s)	458, 481
BarI	GAAGNNNNNNTAC	4 cut(s)	235, 267, 406, 438
BbvI	GCAGC	2 cut(s)	113, 517
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	2 cut(s)	212, 276
BisI	GCNGC	2 cut(s)	102, 531
BlsI	GCNGC	2 cut(s)	103, 532
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	28, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	463
BseXI	GCAGC	2 cut(s)	113, 517
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	51, 121, 448
BspCNI	CTCAG	1 cut(s)	390
BspHI	TCATGA	2 cut(s)	124, 163
BspPI	GGATC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	463
BssMI	GATC	3 cut(s)	51, 121, 448
Bst2UI	CCWGG	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	398, 454
BstKTI	GATC	3 cut(s)	54, 124, 451
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	3 cut(s)	51, 121, 448
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	113, 517
BtsIMutI	CAGTG	1 cut(s)	470
CciI	TCATGA	2 cut(s)	124, 163
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	5 cut(s)	10, 125, 164, 323, 347
CviJI	RGCY	6 cut(s)	104, 132, 154, 172, 218, 475
CviKI_1	RGCY	6 cut(s)	104, 132, 154, 172, 218, 475
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	2 cut(s)	398, 454
DpnI	GATC	3 cut(s)	53, 123, 450
DpnII	GATC	3 cut(s)	51, 121, 448
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	199
FaeI	CATG	5 cut(s)	13, 128, 167, 326, 350
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	5 cut(s)	9, 124, 163, 322, 346
Fnu4HI	GCNGC	2 cut(s)	102, 531
Fsp4HI	GCNGC	2 cut(s)	102, 531
FspBI	CTAG	2 cut(s)	212, 276
GluI	GCNGC	2 cut(s)	102, 531
Hin1II	CATG	5 cut(s)	13, 128, 167, 326, 350
HinfI	GANTC	3 cut(s)	37, 511, 553
HphI	GGTGA	2 cut(s)	458, 481
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	3 cut(s)	51, 256, 516
Hpy188III	TCNNGA	7 cut(s)	34, 119, 125, 164, 194, 212, 265
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	6 cut(s)	13, 122, 183, 261, 408, 437
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	101, 303, 316
HpyF3I	CTNAG	2 cut(s)	398, 454
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	5 cut(s)	13, 128, 167, 326, 350
Kzo9I	GATC	3 cut(s)	51, 121, 448
LpnPI	CCDG	6 cut(s)	19, 90, 188, 215, 476, 554
Lsp1109I	GCAGC	2 cut(s)	113, 517
MaeI	CTAG	2 cut(s)	212, 276
MaeII	ACGT	1 cut(s)	284
MalI	GATC	3 cut(s)	53, 123, 450
MboI	GATC	3 cut(s)	51, 121, 448
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	7 cut(s)	26, 71, 75, 157, 296, 332, 373
MlyI	GAGTC	2 cut(s)	46, 505
MnlI	CCTC	3 cut(s)	52, 465, 474
MseI	TTAA	4 cut(s)	74, 335, 486, 525
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	3 cut(s)	51, 121, 448
NlaIII	CATG	5 cut(s)	13, 128, 167, 326, 350
PagI	TCATGA	2 cut(s)	124, 163
PkrI	GCNGC	2 cut(s)	103, 532
PleI	GAGTC	2 cut(s)	45, 505
PpsI	GAGTC	2 cut(s)	45, 505
PshBI	ATTAAT	2 cut(s)	74, 335
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	74, 335, 486, 525
SatI	GCNGC	2 cut(s)	102, 531
Sau3AI	GATC	3 cut(s)	51, 121, 448
SchI	GAGTC	2 cut(s)	46, 505
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	8 cut(s)	106, 253, 287, 419, 448, 485, 492, 501
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	43, 117
SmoI	CTYRAG	2 cut(s)	43, 117
Sse9I	AATT	7 cut(s)	26, 71, 75, 157, 296, 332, 373
SspMI	CTAG	2 cut(s)	212, 276
StyD4I	CCNGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	6, 501
TasI	AATT	7 cut(s)	26, 71, 75, 157, 296, 332, 373
Tru1I	TTAA	4 cut(s)	74, 335, 486, 525
Tru9I	TTAA	4 cut(s)	74, 335, 486, 525
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	2 cut(s)	101, 530
TspDTI	ATGAA	5 cut(s)	26, 141, 180, 363, 534
TspRI	CASTG	1 cut(s)	470
VspI	ATTAAT	2 cut(s)	74, 335
XapI	RAATTY	1 cut(s)	26
XbaI	TCTAGA	1 cut(s)	211
XspI	CTAG	2 cut(s)	212, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.