Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

17733565 .. 17739254

Gene Structure 5690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGCAAAACCGAAATGTCCAAATGAGATTTTGGGTTAAAATGCTTGAAGAATCAACTTTTAATCACCATAGCTCGCGATCTTTTCGTTCACCACTACCGAGAATCACGGTTTGGTCAATGGCAATGGCTGAGTATGGTGGAGTAATATGCAAATGCATAGCAAGAGGAGCTTCGATTCGGACAACGAAGCATCCCAATTTCCAAAACATTTCGAGAAATTCTCTCTTAAAAAATGGCCTTGAGCACTTGCCGGAAAAAGTACTAGCCACCTTAACCACCAAAGAGCCGCACGGGGATGAATCTAACAACGATGAGGATGATCCCGACGGGTTCAAACCTTACACAACTTCAAGCTCGCCGCGGTTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACACACCAAGACCTCAAGTTCCTCTCTTCTTCGTCACGCACCAAAAGCAACAAGTCCGGATGAGAAAGGTAGGGCTTGAAAGGAGTTCTGTTGGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAGCACATACTGATTTAATAACCCATTTGAGTTGTCCAACTTGCTTGGTTATTCCTAGTCCTTTTTCATATGACACAAAGACTATGCCGGTATATGAGAGTGAGGACTGGGAAGGAAGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

246

Amino Acids

28.37

Weight (kDa)

9.01

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	399
AccII	CGCG	2 cut(s)	79, 364
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	5 cut(s)	290, 362, 364, 376, 397
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	50, 337, 354, 409, 524, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	4 cut(s)	75, 173, 357, 613
AluI	AGCT	4 cut(s)	75, 173, 357, 613
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	610, 617
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	59, 84
AsuNHI	GCTAGC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	622, 629
BfaI	CTAG	4 cut(s)	266, 606, 614, 672
BisI	GCNGC	4 cut(s)	290, 362, 611, 618
BlsI	GCNGC	4 cut(s)	291, 363, 612, 619
BmcAI	AGTACT	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	1 cut(s)	202
BmtI	GCTAGC	1 cut(s)	617
BmuI	ACTGGG	1 cut(s)	733
BpiI	GAAGAC	1 cut(s)	378
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BpuEI	CTTGAG	2 cut(s)	263, 444
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	501
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	4 cut(s)	193, 304, 325, 510
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	622, 629
Bsh1236I	CGCG	2 cut(s)	79, 364
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	254, 502, 704
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	80, 322
Bsp68I	TCGCGA	1 cut(s)	79
BspACI	CCGC	5 cut(s)	290, 362, 364, 376, 397
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	501
BspFNI	CGCG	2 cut(s)	79, 364
BspLI	GGNNCC	1 cut(s)	368
BspOI	GCTAGC	1 cut(s)	617
BspPI	GGATC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	728
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	2 cut(s)	80, 322
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	77, 359, 615
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	4 cut(s)	193, 304, 325, 510
BstFNI	CGCG	2 cut(s)	79, 364
BstKTI	GATC	2 cut(s)	83, 325
BstMBI	GATC	2 cut(s)	80, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 490
BstUI	CGCG	2 cut(s)	79, 364
BstV1I	GCAGC	2 cut(s)	622, 629
BstV2I	GAAGAC	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	4 cut(s)	193, 304, 325, 510
BtuMI	TCGCGA	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	77, 359, 615
Cfr10I	RCCGGY	1 cut(s)	703
Cfr42I	CCGCGG	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	263
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	82, 324
DpnII	GATC	2 cut(s)	80, 322
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	161
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FauNDI	CATATG	1 cut(s)	685
Fnu4HI	GCNGC	4 cut(s)	290, 362, 611, 618
FokI	GGATG	4 cut(s)	180, 311, 332, 517
Fsp4HI	GCNGC	4 cut(s)	290, 362, 611, 618
FspBI	CTAG	4 cut(s)	266, 606, 614, 672
GluI	GCNGC	4 cut(s)	290, 362, 611, 618
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	3 cut(s)	254, 502, 704
HinfI	GANTC	4 cut(s)	53, 105, 178, 302
HpaII	CCGG	3 cut(s)	254, 502, 704
HphI	GGTGA	2 cut(s)	59, 84
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	4 cut(s)	78, 216, 326, 502
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	3 cut(s)	436, 572, 722
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	153, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 490
HpyF3I	CTNAG	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	501
KspI	CCGCGG	1 cut(s)	365
Kzo9I	GATC	2 cut(s)	80, 322
LmnI	GCTCC	3 cut(s)	4, 170, 404
LpnPI	CCDG	5 cut(s)	267, 515, 536, 709, 717
Lsp1109I	GCAGC	2 cut(s)	622, 629
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	4 cut(s)	266, 606, 614, 672
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	82, 324
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	2 cut(s)	80, 322
MboII	GAAGA	6 cut(s)	62, 378, 381, 463, 466, 587
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	199, 220
MmeI	TCCRAC	2 cut(s)	517, 677
MnlI	CCTC	6 cut(s)	161, 310, 440, 468, 477, 712
Mph1103I	ATGCAT	1 cut(s)	161
MroI	TCCGGA	1 cut(s)	501
MseI	TTAA	5 cut(s)	39, 63, 230, 275, 632
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	3 cut(s)	254, 502, 704
MvnI	CGCG	2 cut(s)	79, 364
MwoI	GCNNNNNNNGC	2 cut(s)	170, 490
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	2 cut(s)	80, 322
NheI	GCTAGC	1 cut(s)	613
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	478
NruI	TCGCGA	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	161
PfeI	GAWTC	4 cut(s)	53, 105, 178, 302
PkrI	GCNGC	4 cut(s)	291, 363, 612, 619
PspN4I	GGNNCC	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	79
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	297
SacII	CCGCGG	1 cut(s)	365
SaqAI	TTAA	5 cut(s)	39, 63, 230, 275, 632
SatI	GCNGC	4 cut(s)	290, 362, 611, 618
Sau3AI	GATC	2 cut(s)	80, 322
ScaI	AGTACT	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	77, 175, 275, 343, 359, 428, 460, 516, 615
SfaNI	GCATC	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	365
SgrBI	CCGCGG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	242, 459
SmoI	CTYRAG	2 cut(s)	242, 459
Sse9I	AATT	2 cut(s)	199, 220
SsiI	CCGC	5 cut(s)	290, 362, 364, 376, 397
SspMI	CTAG	4 cut(s)	266, 606, 614, 672
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	176, 215
TasI	AATT	2 cut(s)	199, 220
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	2 cut(s)	292, 364
TfiI	GAWTC	4 cut(s)	53, 105, 178, 302
Tru1I	TTAA	5 cut(s)	39, 63, 230, 275, 632
Tru9I	TTAA	5 cut(s)	39, 63, 230, 275, 632
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	610, 617
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	315, 606, 672
TspGWI	ACGGA	1 cut(s)	391
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	4 cut(s)	266, 606, 614, 672
ZrmI	AGTACT	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.