Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

52724081 .. 52728141

Gene Structure 4061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG410900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTCCGACAAGGAGGAAGACGAGGGCTGGTTTTACCATCAAGATCAAGAAGGAGGAACAAAAAGAAGTTGAGGCCTCGGAGCATTTGTCGGATACCCATGATGATGGTGTCGCCGCTGCTGACCGTCGTCTTTTCGGAACCACAGAAGAGCCGCATGGGGATGAATCTAACGACGATGAGGATGACGCCGATAGGTTCAAACCTTACACACCGTCAAGCTCGCCGCAATTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACATACCAAGACCTCAAGTTCCTCTCTTCTTCGACGTAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGAAAGCGATAGATTTCAAGTGGATAAGGGAGAACAAGGATGTTGTTGCTTGGTATTGCAGCCTAGTTTCATTGAATTTGGGTGATATCTGGTATGAGTCTGCTAGCAGGCTTGTTCATAACTCTTTGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCGACAAGCTCGTTGAGTTGAGAGGCCAACTCAATTCATTGCAAGAAGCTACAGGTGGGAAGCGGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGGTTCCTCAGGCTGCTGCTGCTTTGGCTCTTCAAATGGAATTTATGAAGTGTTTGGATGCTATGAGAGTTGATGATACGATCACGTATCGGAAAGTTGTTTTCACTTTGGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

274

Amino Acids

31.0

Weight (kDa)

7.05

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	175 - 244	2.1e-13	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	7 cut(s)	117, 155, 227, 241, 262, 389, 655
AcsI	RAATTY	2 cut(s)	469, 746
AcyI	GRCGYC	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	7 cut(s)	202, 274, 412, 469, 534, 704, 740
AluBI	AGCT	4 cut(s)	222, 530, 601, 641
AluI	AGCT	4 cut(s)	222, 530, 601, 641
AoxI	GGCC	2 cut(s)	75, 616
ApeKI	GCWGC	7 cut(s)	119, 453, 686, 689, 719, 722, 725
ApoI	RAATTY	2 cut(s)	469, 746
AsuHPI	GGTGA	1 cut(s)	488
AsuNHI	GCTAGC	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	714
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BbsI	GAAGAC	2 cut(s)	26, 243
BbvI	GCAGC	7 cut(s)	106, 465, 673, 676, 706, 709, 712
BccI	CCATC	2 cut(s)	47, 101
BciVI	GTATCC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	458, 498
BfmI	CTRYAG	1 cut(s)	642
BfuI	GTATCC	1 cut(s)	88
BmiI	GGNNCC	3 cut(s)	6, 142, 711
BmsI	GCATC	1 cut(s)	754
BmtI	GCTAGC	1 cut(s)	501
BoxI	GACNNNNGTC	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	26, 243
BplI	GAGNNNNNCTC	2 cut(s)	606, 638
BpuEI	CTTGAG	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	792
BsaBI	GATNNNNATC	1 cut(s)	662
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse21I	CCTNAGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	629
Bse8I	GATNNNNATC	1 cut(s)	662
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	4 cut(s)	169, 190, 439, 769
BseJI	GATNNNNATC	1 cut(s)	662
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	1 cut(s)	728
BseXI	GCAGC	7 cut(s)	106, 465, 673, 676, 706, 709, 712
BshFI	GGCC	2 cut(s)	77, 618
BsnI	GGCC	2 cut(s)	77, 618
Bsp143I	GATC	3 cut(s)	45, 670, 786
BspACI	CCGC	7 cut(s)	117, 155, 227, 241, 262, 389, 655
BspANI	GGCC	2 cut(s)	77, 618
BspCNI	CTCAG	1 cut(s)	727
BspLI	GGNNCC	3 cut(s)	6, 142, 711
BspOI	GCTAGC	1 cut(s)	501
BspQI	GCTCTTC	3 cut(s)	144, 705, 741
BsrBI	CCGCTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	629
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	45, 670, 786
BssNI	GRCGYC	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	128, 216, 580
Bst6I	CTCTTC	4 cut(s)	144, 341, 705, 741
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	792
BstC8I	GCNNGC	3 cut(s)	224, 499, 503
BstDEI	CTNAG	1 cut(s)	714
BstF5I	GGATG	4 cut(s)	169, 190, 439, 769
BstKTI	GATC	3 cut(s)	48, 673, 789
BstMBI	GATC	3 cut(s)	45, 670, 786
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 695, 725, 731
BstNSI	RCATGY	1 cut(s)	591
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	7 cut(s)	106, 465, 673, 676, 706, 709, 712
BstV2I	GAAGAC	2 cut(s)	26, 243
BstXI	CCANNNNNNTGG	1 cut(s)	107
Bsu36I	CCTNAGG	1 cut(s)	714
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	77, 618
BtsCI	GGATG	4 cut(s)	169, 190, 439, 769
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	3 cut(s)	224, 499, 503
CseI	GACGC	1 cut(s)	197
CviAII	CATG	3 cut(s)	101, 158, 588
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	3 cut(s)	47, 672, 788
DpnII	GATC	3 cut(s)	45, 670, 786
Eam1104I	CTCTTC	4 cut(s)	144, 341, 705, 741
EarI	CTCTTC	4 cut(s)	144, 341, 705, 741
Eco147I	AGGCCT	1 cut(s)	77
Eco32I	GATATC	2 cut(s)	481, 660
Eco81I	CCTNAGG	1 cut(s)	714
EcoRV	GATATC	2 cut(s)	481, 660
FaeI	CATG	3 cut(s)	104, 161, 591
FatI	CATG	3 cut(s)	100, 157, 587
FblI	GTMKAC	1 cut(s)	594
FokI	GGATG	4 cut(s)	176, 197, 446, 776
FspBI	CTAG	2 cut(s)	458, 498
HaeIII	GGCC	2 cut(s)	77, 618
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	104, 161, 591
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	2 cut(s)	167, 491
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	5 cut(s)	9, 82, 94, 140, 798
Hpy188III	TCNNGA	3 cut(s)	43, 49, 534
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	3 cut(s)	132, 179, 347
HpyAV	CCTTC	2 cut(s)	46, 301
HpyCH4III	ACNGT	3 cut(s)	128, 216, 580
HpyCH4IV	ACGT	2 cut(s)	345, 791
HpyCH4V	TGCA	2 cut(s)	453, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 695, 725, 731
HpyF3I	CTNAG	1 cut(s)	714
HpySE526I	ACGT	2 cut(s)	345, 791
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	104, 161, 591
Kzo9I	GATC	3 cut(s)	45, 670, 786
LguI	GCTCTTC	3 cut(s)	144, 705, 741
LmnI	GCTCC	3 cut(s)	10, 82, 269
LpnPI	CCDG	6 cut(s)	15, 381, 469, 487, 630, 701
Lsp1109I	GCAGC	7 cut(s)	106, 465, 673, 676, 706, 709, 712
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	2 cut(s)	458, 498
MaeII	ACGT	2 cut(s)	345, 791
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	3 cut(s)	47, 672, 788
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	3 cut(s)	45, 670, 786
MboII	GAAGA	8 cut(s)	31, 161, 243, 246, 328, 331, 692, 728
MluCI	AATT	4 cut(s)	230, 469, 625, 746
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	2 cut(s)	32, 72
MslI	CAYNNNNRTG	2 cut(s)	105, 162
MspA1I	CMGCKG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	356, 695, 725, 731
NdeII	GATC	3 cut(s)	45, 670, 786
NheI	GCTAGC	1 cut(s)	497
NlaIII	CATG	3 cut(s)	104, 161, 591
NlaIV	GGNNCC	3 cut(s)	6, 142, 711
NspI	RCATGY	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	77
PciI	ACATGT	1 cut(s)	587
PciSI	GCTCTTC	3 cut(s)	144, 705, 741
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PfeI	GAWTC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	792
PscI	ACATGT	1 cut(s)	587
PshAI	GACNNNNGTC	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	6, 142, 711
RseI	CAYNNNNRTG	2 cut(s)	105, 162
SalI	GTCGAC	1 cut(s)	593
SapI	GCTCTTC	3 cut(s)	144, 705, 741
Sau3AI	GATC	3 cut(s)	45, 670, 786
SchI	GAGTC	1 cut(s)	500
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	2 cut(s)	105, 162
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	4 cut(s)	230, 469, 625, 746
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	7 cut(s)	117, 155, 227, 241, 262, 389, 655
SspMI	CTAG	2 cut(s)	458, 498
StuI	AGGCCT	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	128, 216, 580
TaiI	ACGT	2 cut(s)	348, 794
TaqI	TCGA	2 cut(s)	342, 594
TasI	AATT	4 cut(s)	230, 469, 625, 746
TauI	GCSGC	3 cut(s)	119, 157, 229
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	398
TseI	GCWGC	7 cut(s)	119, 453, 686, 689, 719, 722, 725
TspDTI	ATGAA	6 cut(s)	180, 398, 453, 500, 618, 767
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	398
XapI	RAATTY	2 cut(s)	469, 746
XceI	RCATGY	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	2 cut(s)	458, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.