Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

21007988 .. 21036902

Gene Structure 28915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG134200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTTGGAACTGAAGATATGGCTGAAACTGGTGACGCCTCAACCAATAACGTGGGCTCGGCTGATAGCAAAGGCTCTTCGGAAGAAGCTCAATCAGAAAGCGGCAATCAAGAGAGAGATGGCCGCATTGATCACTCTTTGCCCCCACTAGAAAACTCCATGATTGAGATTGACATGGATGACTTGGGTGAGAACCAACTTCATAACACATCGAGCATCGGCCAACAACTTGCCATATCAAACAATTTTTCCAAGGATGTCGAAGACACCGATGTGCTTGGCCTAGAAACACTACTTACCCATCAAACATTGGTTCAGGTGGGAAAATCTCGAAGCAGTATAACCCTAGAATTGGCTCTTCTCAACCAACTGAACCACATCCCCCTATGTTCGGAACACTTACCTCTCCTCCTAATGATGGGATGTGTCAAAGTGAGCAAGCTATCGTTTGCGCTCCATCTTCGGCCGAGGCTTGTGGATCATACAGCGGGTATGAAACCGCAGTGGAAAGCCATAGATTTCAAGTGGATAAGGGAGAACAAGCATGTTGTTACTTGGTATTGCAGCCTAGTTTCATTGAATTTGGGTGATATCTGCGCACACCACCTATTCGATGGAATGCCTCACATAACCCTTCACTTTAATTGGGTAGGGCTTGAAAGAAGTTCTGTTAGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAAGGTTGTTCATAACTATTTGGGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

260

Amino Acids

29.22

Weight (kDa)

5.3

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	598
AciI	CCGC	4 cut(s)	102, 124, 488, 500
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	3 cut(s)	121, 220, 464
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	3 cut(s)	352, 391, 418
AgsI	TTSAA	4 cut(s)	523, 580, 659, 710
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	89, 442, 748
AluI	AGCT	3 cut(s)	89, 442, 748
AlwI	GGATC	1 cut(s)	486
AoxI	GGCC	4 cut(s)	121, 220, 280, 464
ApeKI	GCWGC	2 cut(s)	564, 745
ApoI	RAATTY	1 cut(s)	580
AspLEI	GCGC	2 cut(s)	454, 599
AsuHPI	GGTGA	3 cut(s)	44, 200, 599
AsuNHI	GCTAGC	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	576, 757
BccI	CCATC	5 cut(s)	113, 309, 412, 465, 608
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	6 cut(s)	149, 284, 347, 569, 741, 749
BisI	GCNGC	4 cut(s)	103, 124, 565, 746
BlsI	GCNGC	4 cut(s)	104, 125, 566, 747
BmsI	GCATC	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	252, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 391, 418
Bse1I	ACTGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	252, 467
BseGI	GGATG	4 cut(s)	184, 262, 378, 428
BseLI	CCNNNNNNNGG	3 cut(s)	352, 391, 418
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	398
BseX3I	CGGCCG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	576, 757
Bsh1285I	CGRYCG	1 cut(s)	467
BshFI	GGCC	4 cut(s)	123, 222, 282, 466
BsiEI	CGRYCG	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	352, 391, 418
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	4 cut(s)	123, 222, 282, 466
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	130, 478
BspACI	CCGC	4 cut(s)	102, 124, 488, 500
BspANI	GGCC	4 cut(s)	123, 222, 282, 466
BspOI	GCTAGC	1 cut(s)	752
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	2 cut(s)	82, 363
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	252, 467
BssMI	GATC	2 cut(s)	130, 478
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	252
Bst6I	CTCTTC	2 cut(s)	82, 363
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	440, 750
BstF5I	GGATG	4 cut(s)	184, 262, 378, 428
BstHHI	GCGC	2 cut(s)	454, 599
BstKTI	GATC	2 cut(s)	133, 481
BstMBI	GATC	2 cut(s)	130, 478
BstMCI	CGRYCG	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	576, 757
BstV2I	GAAGAC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstZI	CGGCCG	1 cut(s)	464
BsuRI	GGCC	4 cut(s)	123, 222, 282, 466
BtsCI	GGATG	4 cut(s)	184, 262, 378, 428
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	440, 750
CfoI	GCGC	2 cut(s)	454, 599
CseI	GACGC	1 cut(s)	44
CviAII	CATG	3 cut(s)	160, 175, 545
DpnI	GATC	2 cut(s)	132, 480
DpnII	GATC	2 cut(s)	130, 478
EaeI	YGGCCR	3 cut(s)	121, 220, 464
EagI	CGGCCG	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	82, 363
EarI	CTCTTC	2 cut(s)	82, 363
EclXI	CGGCCG	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	592
Eco52I	CGGCCG	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	3 cut(s)	163, 178, 548
FatI	CATG	3 cut(s)	159, 174, 544
FauI	CCCGC	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	103, 124, 565, 746
FokI	GGATG	4 cut(s)	191, 269, 365, 435
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	103, 124, 565, 746
FspBI	CTAG	6 cut(s)	149, 284, 347, 569, 741, 749
FspI	TGCGCA	1 cut(s)	598
GlaI	GCGC	2 cut(s)	453, 598
GluI	GCNGC	4 cut(s)	103, 124, 565, 746
HaeIII	GGCC	4 cut(s)	123, 222, 282, 466
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	454, 599
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	163, 178, 548
Hin6I	GCGC	2 cut(s)	452, 597
HinP1I	GCGC	2 cut(s)	452, 597
HphI	GGTGA	3 cut(s)	44, 200, 599
Hpy188I	TCNGA	3 cut(s)	82, 97, 394
Hpy188III	TCNNGA	2 cut(s)	110, 330
HpyAV	CCTTC	2 cut(s)	644, 707
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	564
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	163, 178, 548
HspAI	GCGC	2 cut(s)	452, 597
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	130, 478
LguI	GCTCTTC	2 cut(s)	82, 363
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	3 cut(s)	15, 302, 671
Lsp1109I	GCAGC	2 cut(s)	576, 757
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	6 cut(s)	149, 284, 347, 569, 741, 749
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	32, 550
MalI	GATC	2 cut(s)	132, 480
MboI	GATC	2 cut(s)	130, 478
MboII	GAAGA	7 cut(s)	26, 69, 95, 275, 350, 452, 722
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	4 cut(s)	244, 350, 580, 643
MnlI	CCTC	6 cut(s)	49, 414, 419, 462, 633, 769
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	624
NdeII	GATC	2 cut(s)	130, 478
NheI	GCTAGC	1 cut(s)	748
NlaIII	CATG	3 cut(s)	163, 178, 548
NmeAIII	GCCGAG	2 cut(s)	38, 492
NmuCI	GTSAC	1 cut(s)	32
NsbI	TGCGCA	1 cut(s)	598
NspI	RCATGY	1 cut(s)	548
OliI	CACNNNNGTG	1 cut(s)	272
PciSI	GCTCTTC	2 cut(s)	82, 363
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	624
PkrI	GCNGC	4 cut(s)	104, 125, 566, 747
RseI	CAYNNNNRTG	1 cut(s)	272
SapI	GCTCTTC	2 cut(s)	82, 363
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	4 cut(s)	103, 124, 565, 746
Sau3AI	GATC	2 cut(s)	130, 478
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	9 cut(s)	54, 91, 321, 406, 444, 609, 750, 758, 780
SfaNI	GCATC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	244, 350, 580, 643
SsiI	CCGC	4 cut(s)	102, 124, 488, 500
SspMI	CTAG	6 cut(s)	149, 284, 347, 569, 741, 749
StyI	CCWWGG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	4 cut(s)	212, 261, 331, 612
TasI	AATT	4 cut(s)	244, 350, 580, 643
TauI	GCSGC	2 cut(s)	105, 126
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	1 cut(s)	509
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	564, 745
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	5 cut(s)	191, 509, 564, 741, 751
TspRI	CASTG	1 cut(s)	509
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	6 cut(s)	149, 284, 347, 569, 741, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.