Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

77815072 .. 77825340

Gene Structure 10269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021740

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGTTGTCCAGATTTGTCGGATACCCATGCTGATGGTGTCGCCGCTGCTGACCGTCGTCTTTTAGGAACCACAGAAGAGCCGCATGGGGATGAATCTAACGACGATGAGGATGACGCCGATAGGTTCAAACCTTACACACCGTCAAGCTCGCCGCAATTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACATACCAAGACCTCAAGTTCCTCTCTTCTTCGACATAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGAAAGCGATAGATTTCAAGTGGATAAGGGAGAACAAGGATGTTGTTGCTTGGGTAGGGCTTGAAAGGAGTTCTGTTGGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAGGCTTGTTCATAACTCTTTGTTCCATGCAGCTTTGTCGTGCCATTGGTAACAAGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCGACAAGCTCGTTGAGTTGAGAGGCCAACTCAATTCATTGCAAGAAGCTACAGGTGGGAAGCGGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGGTTCCTCAGGCTGCTGCTGCTTTGGCTCTTCAAATGGAATTTATGAGGTGTTTGGATGCTATGAGAGTTGATGATACGATCACGTATCGGAAAGGGTTTCTGAATCCAAATGAAGTTCACATTTTCGGCTATGCAAGGACTAAGATTTCTTATGATGAGCTAAGAAGCCGCATACGTGGATATCTCATCCAAGGAGCTTCGTCCAAGGACTTGGATGATGTAACCAAATTTTTGCAACTGGAGGGAAGAGATATAAGTGATGCTGTGGGAGAGTGGCCAACACAGTTTCTAAGCTGCTACAACATTTTTATTCGTTTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

348

Amino Acids

39.19

Weight (kDa)

7.03

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	178 - 248	9.4e-14	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	8 cut(s)	45, 83, 155, 169, 190, 317, 667, 889
AcoI	YGGCCR	1 cut(s)	995
AcsI	RAATTY	2 cut(s)	758, 947
AcyI	GRCGYC	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	8 cut(s)	130, 202, 340, 386, 437, 546, 716, 752
AluBI	AGCT	9 cut(s)	150, 475, 511, 542, 613, 653, 880, 917, 1014
AluI	AGCT	9 cut(s)	150, 475, 511, 542, 613, 653, 880, 917, 1014
AoxI	GGCC	2 cut(s)	628, 995
ApeKI	GCWGC	9 cut(s)	47, 472, 508, 698, 701, 731, 734, 737, 1014
ApoI	RAATTY	2 cut(s)	758, 947
AsuNHI	GCTAGC	1 cut(s)	475
AxyI	CCTNAGG	1 cut(s)	726
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BalI	TGGCCA	1 cut(s)	997
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	9 cut(s)	34, 484, 520, 685, 688, 718, 721, 724, 1001
BccI	CCATC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciVI	GTATCC	1 cut(s)	16
BfaI	CTAG	2 cut(s)	468, 476
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	70, 723
BmsI	GCATC	2 cut(s)	766, 970
BmtI	GCTAGC	1 cut(s)	479
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	618, 650
BpmI	CTGGAG	1 cut(s)	980
BpuEI	CTTGAG	1 cut(s)	237
BsaAI	YACGTR	2 cut(s)	804, 896
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	910, 924
Bse1I	ACTGG	1 cut(s)	963
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	674
BseDI	CCNNGG	2 cut(s)	910, 924
BseGI	GGATG	6 cut(s)	97, 118, 367, 781, 906, 940
BseJI	GATNNNNATC	1 cut(s)	674
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	1 cut(s)	963
BseXI	GCAGC	9 cut(s)	34, 484, 520, 685, 688, 718, 721, 724, 1001
BshFI	GGCC	2 cut(s)	630, 997
BsnI	GGCC	2 cut(s)	630, 997
Bsp143I	GATC	2 cut(s)	682, 798
BspACI	CCGC	8 cut(s)	45, 83, 155, 169, 190, 317, 667, 889
BspANI	GGCC	2 cut(s)	630, 997
BspCNI	CTCAG	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	70, 723
BspOI	GCTAGC	1 cut(s)	479
BspQI	GCTCTTC	3 cut(s)	72, 717, 753
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	641
BsrI	ACTGG	1 cut(s)	963
BssECI	CCNNGG	2 cut(s)	910, 924
BssMI	GATC	2 cut(s)	682, 798
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	910, 924
Bst4CI	ACNGT	4 cut(s)	56, 144, 592, 1005
Bst6I	CTCTTC	5 cut(s)	72, 269, 717, 753, 961
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	2 cut(s)	804, 896
BstC8I	GCNNGC	3 cut(s)	152, 477, 481
BstDEI	CTNAG	4 cut(s)	726, 861, 881, 1010
BstF5I	GGATG	6 cut(s)	97, 118, 367, 781, 906, 940
BstKTI	GATC	2 cut(s)	685, 801
BstMBI	GATC	2 cut(s)	682, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 707, 737, 743
BstNSI	RCATGY	1 cut(s)	603
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	9 cut(s)	34, 484, 520, 685, 688, 718, 721, 724, 1001
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	2 cut(s)	35, 931
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	630, 997
BtsCI	GGATG	6 cut(s)	97, 118, 367, 781, 906, 940
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	152, 477, 481
CseI	GACGC	1 cut(s)	125
CviAII	CATG	4 cut(s)	29, 86, 505, 600
DdeI	CTNAG	4 cut(s)	726, 861, 881, 1010
DpnI	GATC	2 cut(s)	684, 800
DpnII	GATC	2 cut(s)	682, 798
EaeI	YGGCCR	1 cut(s)	995
Eam1104I	CTCTTC	5 cut(s)	72, 269, 717, 753, 961
EarI	CTCTTC	5 cut(s)	72, 269, 717, 753, 961
Eco130I	CCWWGG	2 cut(s)	910, 924
Eco32I	GATATC	2 cut(s)	672, 902
Eco81I	CCTNAGG	1 cut(s)	726
EcoRV	GATATC	2 cut(s)	672, 902
EcoT14I	CCWWGG	2 cut(s)	910, 924
ErhI	CCWWGG	2 cut(s)	910, 924
FaeI	CATG	4 cut(s)	32, 89, 508, 603
FatI	CATG	4 cut(s)	28, 85, 504, 599
FblI	GTMKAC	1 cut(s)	606
FokI	GGATG	6 cut(s)	104, 125, 374, 788, 893, 947
FspBI	CTAG	2 cut(s)	468, 476
GsuI	CTGGAG	1 cut(s)	980
HaeIII	GGCC	2 cut(s)	630, 997
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	32, 89, 508, 603
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	2 cut(s)	95, 823
Hpy166II	GTNNAC	3 cut(s)	607, 838, 1037
Hpy188I	TCNGA	3 cut(s)	22, 810, 822
Hpy188III	TCNNGA	2 cut(s)	11, 546
Hpy8I	GTNNAC	3 cut(s)	607, 838, 1037
Hpy99I	CGWCG	2 cut(s)	60, 107
HpyAV	CCTTC	2 cut(s)	229, 434
HpyCH4III	ACNGT	4 cut(s)	56, 144, 592, 1005
HpyCH4IV	ACGT	3 cut(s)	803, 895, 1039
HpyCH4V	TGCA	4 cut(s)	508, 646, 854, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 707, 737, 743
HpyF3I	CTNAG	4 cut(s)	726, 861, 881, 1010
HpySE526I	ACGT	3 cut(s)	803, 895, 1039
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	32, 89, 508, 603
Kzo9I	GATC	2 cut(s)	682, 798
LguI	GCTCTTC	3 cut(s)	72, 717, 753
LmnI	GCTCC	2 cut(s)	197, 914
LpnPI	CCDG	7 cut(s)	24, 309, 398, 465, 642, 713, 944
Lsp1109I	GCAGC	9 cut(s)	34, 484, 520, 685, 688, 718, 721, 724, 1001
LweI	GCATC	2 cut(s)	766, 970
MaeI	CTAG	2 cut(s)	468, 476
MaeII	ACGT	3 cut(s)	803, 895, 1039
MaeIII	GTNAC	3 cut(s)	527, 535, 940
MalI	GATC	2 cut(s)	684, 800
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	2 cut(s)	682, 798
MboII	GAAGA	9 cut(s)	89, 171, 174, 256, 259, 449, 704, 740, 978
MlsI	TGGCCA	1 cut(s)	997
MluCI	AATT	4 cut(s)	158, 637, 758, 947
MluNI	TGGCCA	1 cut(s)	997
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	9 cut(s)	103, 233, 261, 270, 585, 620, 735, 759, 955
Mox20I	TGGCCA	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	997
MslI	CAYNNNNRTG	2 cut(s)	33, 90
Msp20I	TGGCCA	1 cut(s)	997
MspA1I	CMGCKG	1 cut(s)	47
MwoI	GCNNNNNNNGC	4 cut(s)	284, 707, 737, 743
NdeII	GATC	2 cut(s)	682, 798
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	4 cut(s)	32, 89, 508, 603
NlaIV	GGNNCC	2 cut(s)	70, 723
NspI	RCATGY	1 cut(s)	603
PciI	ACATGT	1 cut(s)	599
PciSI	GCTCTTC	3 cut(s)	72, 717, 753
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	95, 823
Ppu21I	YACGTR	2 cut(s)	804, 896
PscI	ACATGT	1 cut(s)	599
PshAI	GACNNNNGTC	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	70, 723
RseI	CAYNNNNRTG	2 cut(s)	33, 90
SalI	GTCGAC	1 cut(s)	605
SapI	GCTCTTC	3 cut(s)	72, 717, 753
Sau3AI	GATC	2 cut(s)	682, 798
SfaNI	GCATC	2 cut(s)	766, 970
SfcI	CTRYAG	1 cut(s)	654
SmiMI	CAYNNNNRTG	2 cut(s)	33, 90
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	4 cut(s)	158, 637, 758, 947
SsiI	CCGC	8 cut(s)	45, 83, 155, 169, 190, 317, 667, 889
SspMI	CTAG	2 cut(s)	468, 476
StyI	CCWWGG	2 cut(s)	910, 924
TaaI	ACNGT	4 cut(s)	56, 144, 592, 1005
TaiI	ACGT	3 cut(s)	806, 898, 1042
TaqI	TCGA	2 cut(s)	270, 606
TasI	AATT	4 cut(s)	158, 637, 758, 947
TauI	GCSGC	4 cut(s)	47, 85, 157, 891
TfiI	GAWTC	2 cut(s)	95, 823
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	9 cut(s)	47, 472, 508, 698, 701, 731, 734, 737, 1014
TspDTI	ATGAA	6 cut(s)	108, 326, 468, 478, 630, 846
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	326
XapI	RAATTY	2 cut(s)	758, 947
XceI	RCATGY	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	2 cut(s)	468, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.