Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

56596049 .. 56598523

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGTTGTCCAGATTTGTCGGATACCCATGCTGATGGTGTCGCCGCTGCTGACCGTCGTCTTTTCGGAACCACAGAAGAGCCGCATGGGGATGAATCTAACGACGATGAGGATGACGCCGATAGGTTCAAACCTTACACACCGTCAAGCTCGCCGCAATTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACATACCAAGACCTCAAGTTCCTCTCTTCTTCGACATAGCACCAAAAGCAACAAGCCCAGATGAGAAGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCGACAAGCTCGTTGAGTTGAGAGGCCAACTCAATTCATTGCAAGAAGCCACAGGTGGGAAGCAGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGGTTCCTCAGGCTGCTGCTGCTTTGGCTCTTCAAATGGAATTTATGAGGTGTTTAGATGCTATGAGAGTTGATGATACGATCACGTATCGGAAAGTTGTTTTCACTTTGGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

203

Amino Acids

22.45

Weight (kDa)

5.51

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	101 - 172	3.2e-14	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	5 cut(s)	45, 83, 155, 169, 190
AcsI	RAATTY	1 cut(s)	530
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	130, 202, 318, 488, 524
AluBI	AGCT	3 cut(s)	150, 314, 385
AluI	AGCT	3 cut(s)	150, 314, 385
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	6 cut(s)	47, 470, 473, 503, 506, 509
ApoI	RAATTY	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	498
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	6 cut(s)	34, 457, 460, 490, 493, 496
BccI	CCATC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	9 cut(s)	45, 48, 83, 155, 471, 474, 504, 507, 510
BlsI	GCNGC	9 cut(s)	46, 49, 84, 156, 472, 475, 505, 508, 511
BmiI	GGNNCC	2 cut(s)	70, 495
BmsI	GCATC	1 cut(s)	538
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpuEI	CTTGAG	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	576
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse21I	CCTNAGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	446
BseGI	GGATG	2 cut(s)	97, 118
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	512
BseXI	GCAGC	6 cut(s)	34, 457, 460, 490, 493, 496
BshFI	GGCC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	432
BsnI	GGCC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	454, 570
BspACI	CCGC	5 cut(s)	45, 83, 155, 169, 190
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	70, 495
BspQI	GCTCTTC	3 cut(s)	72, 489, 525
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	413
BssMI	GATC	2 cut(s)	454, 570
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	56, 144, 364
Bst6I	CTCTTC	4 cut(s)	72, 269, 489, 525
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	576
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	97, 118
BstKTI	GATC	2 cut(s)	457, 573
BstMBI	GATC	2 cut(s)	454, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 479, 509, 515
BstNSI	RCATGY	1 cut(s)	375
BstPAI	GACNNNNGTC	1 cut(s)	57
BstV1I	GCAGC	6 cut(s)	34, 457, 460, 490, 493, 496
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	97, 118
Cac8I	GCNNGC	1 cut(s)	152
CseI	GACGC	1 cut(s)	125
CviAII	CATG	3 cut(s)	29, 86, 372
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	2 cut(s)	456, 572
DpnII	GATC	2 cut(s)	454, 570
Eam1104I	CTCTTC	4 cut(s)	72, 269, 489, 525
EarI	CTCTTC	4 cut(s)	72, 269, 489, 525
Eco32I	GATATC	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	444
FaeI	CATG	3 cut(s)	32, 89, 375
FaiI	YATR	8 cut(s)	30, 87, 234, 242, 275, 373, 536, 554
FatI	CATG	3 cut(s)	28, 85, 371
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	9 cut(s)	45, 48, 83, 155, 471, 474, 504, 507, 510
FokI	GGATG	2 cut(s)	104, 125
Fsp4HI	GCNGC	9 cut(s)	45, 48, 83, 155, 471, 474, 504, 507, 510
GluI	GCNGC	9 cut(s)	45, 48, 83, 155, 471, 474, 504, 507, 510
HaeIII	GGCC	1 cut(s)	402
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	32, 89, 375
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	22, 68, 582
Hpy188III	TCNNGA	2 cut(s)	11, 318
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	2 cut(s)	60, 107
HpyAV	CCTTC	2 cut(s)	229, 298
HpyCH4III	ACNGT	3 cut(s)	56, 144, 364
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 479, 509, 515
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	575
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	32, 89, 375
Kzo9I	GATC	2 cut(s)	454, 570
LguI	GCTCTTC	3 cut(s)	72, 489, 525
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	4 cut(s)	24, 309, 414, 485
Lsp1109I	GCAGC	6 cut(s)	34, 457, 460, 490, 493, 496
LweI	GCATC	1 cut(s)	538
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	456, 572
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	2 cut(s)	454, 570
MboII	GAAGA	7 cut(s)	89, 171, 174, 256, 259, 476, 512
MluCI	AATT	3 cut(s)	158, 409, 530
MnlI	CCTC	8 cut(s)	103, 233, 261, 270, 357, 392, 507, 531
MslI	CAYNNNNRTG	2 cut(s)	33, 90
MspA1I	CMGCKG	1 cut(s)	47
MwoI	GCNNNNNNNGC	4 cut(s)	284, 479, 509, 515
NdeII	GATC	2 cut(s)	454, 570
NlaIII	CATG	3 cut(s)	32, 89, 375
NlaIV	GGNNCC	2 cut(s)	70, 495
NspI	RCATGY	1 cut(s)	375
PciI	ACATGT	1 cut(s)	371
PciSI	GCTCTTC	3 cut(s)	72, 489, 525
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	9 cut(s)	46, 49, 84, 156, 472, 475, 505, 508, 511
Ppu21I	YACGTR	1 cut(s)	576
PscI	ACATGT	1 cut(s)	371
PshAI	GACNNNNGTC	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	70, 495
RseI	CAYNNNNRTG	2 cut(s)	33, 90
SalI	GTCGAC	1 cut(s)	377
SapI	GCTCTTC	3 cut(s)	72, 489, 525
SatI	GCNGC	9 cut(s)	45, 48, 83, 155, 471, 474, 504, 507, 510
Sau3AI	GATC	2 cut(s)	454, 570
SfaNI	GCATC	1 cut(s)	538
SmiMI	CAYNNNNRTG	2 cut(s)	33, 90
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	158, 409, 530
SsiI	CCGC	5 cut(s)	45, 83, 155, 169, 190
TaaI	ACNGT	3 cut(s)	56, 144, 364
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	2 cut(s)	270, 378
TasI	AATT	3 cut(s)	158, 409, 530
TauI	GCSGC	3 cut(s)	47, 85, 157
TfiI	GAWTC	1 cut(s)	95
TseI	GCWGC	6 cut(s)	47, 470, 473, 503, 506, 509
TspDTI	ATGAA	2 cut(s)	108, 402
TspGWI	ACGGA	1 cut(s)	184
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.