Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Reverse (-)

12800153 .. 12808893

Gene Structure 8741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAAAACATAAATAAGAAAAGCAGAGGAAGTGTCTTTCCTGTCTCTCTTATATACCTTGATTATCCATGGGTGACAAACGTACGCCCCAATTACAAGAGAGGATTTAGATGCCCTTACCACTCGGATGAATGCTCGGATTGCTGCCAGAACGCTCAAATGGCAAAATTTCGTGGGTTGTTGGAAGGAAGGAACAACAATTATTATAACAGAGGCGGGAAGGACAACGTGCTAGGGATCCACATGGGGGTGGAGGTGATGTTGATCATGATCCCCAAGATCTCGAATTTCTCGAATTGGCTTCTTGAGGTTGAGAGGTTCTTCACTCTAACAAATGTCTTGGAGAATAAGCAAGTTAAGATGGTTTCTCGAAGCCGAAGAAAGATACCGCTTATTGGTGGGATCAGTTGCGAGTTCTCGTCGAGGCAAGGAAAAGAGCGTGTTAGGACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

151

Amino Acids

17.62

Weight (kDa)

9.89

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AciI	CCGC	2 cut(s)	216, 389
AclWI	GGATC	4 cut(s)	232, 245, 265, 410
AcsI	RAATTY	2 cut(s)	167, 286
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	247, 395
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	4 cut(s)	232, 245, 265, 410
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	167, 286
AsuHPI	GGTGA	2 cut(s)	85, 268
BamHI	GGATCC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	355
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	233
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	239
BmsI	GCATC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	326
BsaBI	GATNNNNATC	2 cut(s)	263, 269
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 395
Bse8I	GATNNNNATC	2 cut(s)	263, 269
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	2 cut(s)	263, 269
BseLI	CCNNNNNNNGG	2 cut(s)	247, 395
BseXI	GCAGC	1 cut(s)	131
BsiWI	CGTACG	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	247, 395
BsmAI	GTCTC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	137
Bsp143I	GATC	5 cut(s)	237, 264, 270, 279, 402
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	2 cut(s)	216, 389
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	4 cut(s)	232, 245, 265, 410
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	5 cut(s)	237, 264, 270, 279, 402
BssT1I	CCWWGG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	5 cut(s)	240, 267, 273, 282, 405
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	237, 264, 270, 279, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 161
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	237, 279
BstYI	RGATCY	2 cut(s)	237, 279
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	133
CciI	TCATGA	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	4 cut(s)	69, 244, 268, 450
CviJI	RGCY	2 cut(s)	301, 375
CviKI_1	RGCY	2 cut(s)	301, 375
CviQI	GTAC	1 cut(s)	83
DpnI	GATC	5 cut(s)	239, 266, 272, 281, 404
DpnII	GATC	5 cut(s)	237, 264, 270, 279, 402
Eco130I	CCWWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	72, 247, 271, 453
FaiI	YATR	8 cut(s)	11, 53, 55, 70, 207, 245, 269, 451
FatI	CATG	4 cut(s)	68, 243, 267, 449
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	145
Hin1II	CATG	4 cut(s)	72, 247, 271, 453
HphI	GGTGA	2 cut(s)	85, 268
Hpy188I	TCNGA	2 cut(s)	127, 139
Hpy188III	TCNNGA	5 cut(s)	268, 283, 292, 305, 369
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	3 cut(s)	179, 183, 214
HpyCH4IV	ACGT	2 cut(s)	81, 228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 161
HpySE526I	ACGT	2 cut(s)	81, 228
Hsp92II	CATG	4 cut(s)	72, 247, 271, 453
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	237, 264, 270, 279, 402
LpnPI	CCDG	2 cut(s)	54, 161
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	2 cut(s)	81, 228
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	5 cut(s)	239, 266, 272, 281, 404
MboI	GATC	5 cut(s)	237, 264, 270, 279, 402
MboII	GAAGA	2 cut(s)	313, 390
MflI	RGATCY	2 cut(s)	237, 279
MluCI	AATT	5 cut(s)	91, 167, 199, 286, 295
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	7 cut(s)	20, 95, 206, 247, 301, 309, 417
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	126, 248
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	141, 161
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	5 cut(s)	237, 264, 270, 279, 402
NlaIII	CATG	4 cut(s)	72, 247, 271, 453
NlaIV	GGNNCC	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	73
PagI	TCATGA	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PctI	GAATGC	1 cut(s)	137
Pfl23II	CGTACG	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	146
PsiI	TTATAA	1 cut(s)	207
PspLI	CGTACG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	237, 279
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	2 cut(s)	126, 248
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	5 cut(s)	237, 264, 270, 279, 402
SetI	ASST	6 cut(s)	60, 84, 231, 258, 312, 320
SfaNI	GCATC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	126, 248
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	5 cut(s)	91, 167, 199, 286, 295
SsiI	CCGC	2 cut(s)	216, 389
SspMI	CTAG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	68
TaiI	ACGT	2 cut(s)	84, 231
TaqI	TCGA	4 cut(s)	284, 293, 370, 422
TasI	AATT	5 cut(s)	91, 167, 199, 286, 295
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	17, 144
XapI	RAATTY	2 cut(s)	167, 286
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.