Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

3256009 .. 3269722

Gene Structure 13714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG033000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATTCTCAAGGTTCTGAGGGAGCAAATGGACGATGGCGATGCAGCCAAGGCAGGGAGGAGGAGTTTCAAGCAGCGACTGAGATTGACCGGAATCGGGTGTTGCGGCGCCGCCTGGGTTAGGTTCAAACCTTACAAACCCTCAAGCTCACCGCAATTCCTTTACTGCAACCCGTCTTCTTCTTTCCGCTCTGTTTTCAAACCATTATCGAAAAACTTCCTCTACCGCCATAGCCACACACCAAGACCTCAAATTCCTCTCAAGGGCTTCTCAGCTTCAGCCGTACAAGCCACTGTCGCTACAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGAAAGCGATAGATTTCAAGTGGATAAAGGAGAACAAGGATGCTGTTGCTTGGGTAGGGCTTGAAAGGAGTTCTGTTGGACATTGGTGGCTGGATAATATAAGAAAGGGTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTTAGCAAGCTTGTTCATATCTCTTTGGGAGGTGGAGGTGTGAGAATCAGAGTCTATGATCAAATAATGCACTATGTGAACTGTCACTTGGCTGCACATTTGGAAGTTGTCAATCAACGCAATGCTGATTTGATCACATGTATCGAAATATGGTCTTCAATCGGTCATCTCTACTTAACACAACAGCTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

231

Amino Acids

26.12

Weight (kDa)

9.74

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	189
AciI	CCGC	6 cut(s)	105, 111, 152, 187, 226, 344
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	577
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	4 cut(s)	54, 96, 120, 263
AflIII	ACRYGT	1 cut(s)	638
AgsI	TTSAA	7 cut(s)	70, 127, 199, 367, 413, 464, 660
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	5 cut(s)	147, 275, 502, 511, 688
AluI	AGCT	5 cut(s)	147, 275, 502, 511, 688
AlwNI	CAGNNNCTG	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	44, 73, 499, 593
ApoI	RAATTY	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	107
BbsI	GAAGAC	2 cut(s)	168, 648
BbvI	GCAGC	4 cut(s)	56, 85, 511, 580
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	115
BclI	TGATCA	2 cut(s)	559, 633
BfaI	CTAG	2 cut(s)	495, 689
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	6 cut(s)	45, 74, 106, 111, 500, 594
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	6 cut(s)	46, 75, 107, 112, 501, 595
Bme1390I	CCNGG	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	31, 379
BpiI	GAAGAC	2 cut(s)	168, 648
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuEI	CTTGAG	2 cut(s)	127, 245
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	48, 114
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 96, 120, 263
Bse3DI	GCAATG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	48, 114
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	4 cut(s)	54, 96, 120, 263
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	8, 71, 285
BseRI	GAGGAG	2 cut(s)	73, 76
BseXI	GCAGC	4 cut(s)	56, 85, 511, 580
BsgI	GTGCAG	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	4 cut(s)	54, 96, 120, 263
Bsp143I	GATC	2 cut(s)	559, 633
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	6 cut(s)	105, 111, 152, 187, 226, 344
BspCNI	CTCAG	3 cut(s)	9, 72, 284
BspLI	GGNNCC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	48, 114
BssMI	GATC	2 cut(s)	559, 633
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	295, 584
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	4 cut(s)	17, 80, 271, 503
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	394
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	562, 636
BstMBI	GATC	2 cut(s)	559, 633
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 287, 296, 311, 508
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	56, 85, 511, 580
BstV2I	GAAGAC	2 cut(s)	168, 648
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	291, 353
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	1 cut(s)	639
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	4 cut(s)	17, 80, 271, 503
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	2 cut(s)	561, 635
DpnII	GATC	2 cut(s)	559, 633
DraIII	CACNNNGTG	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	261
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	48
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	642
FatI	CATG	1 cut(s)	638
FbaI	TGATCA	2 cut(s)	559, 633
Fnu4HI	GCNGC	6 cut(s)	45, 74, 106, 111, 500, 594
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	6 cut(s)	45, 74, 106, 111, 500, 594
FspBI	CTAG	2 cut(s)	495, 689
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	45, 74, 106, 111, 500, 594
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	642
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	4 cut(s)	4, 93, 546, 552
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	2 cut(s)	18, 551
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	2 cut(s)	295, 584
HpyCH4V	TGCA	4 cut(s)	44, 168, 571, 596
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 287, 296, 311, 508
HpyF3I	CTNAG	4 cut(s)	17, 80, 271, 503
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	642
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
Ksp22I	TGATCA	2 cut(s)	559, 633
Kzo9I	GATC	2 cut(s)	559, 633
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	6 cut(s)	39, 100, 103, 127, 336, 425
Lsp1109I	GCAGC	4 cut(s)	56, 85, 511, 580
LweI	GCATC	2 cut(s)	31, 379
MaeI	CTAG	2 cut(s)	495, 689
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	2 cut(s)	561, 635
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	2 cut(s)	559, 633
MboII	GAAGA	4 cut(s)	168, 171, 476, 648
MluCI	AATT	2 cut(s)	155, 252
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	9 cut(s)	12, 51, 54, 151, 230, 258, 267, 524, 530
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	677
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	5 cut(s)	50, 287, 296, 311, 508
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	2 cut(s)	559, 633
NlaIII	CATG	1 cut(s)	642
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	584
NspI	RCATGY	1 cut(s)	642
PciI	ACATGT	1 cut(s)	638
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	4, 93, 546
PkrI	GCNGC	6 cut(s)	46, 75, 107, 112, 501, 595
PleI	GAGTC	1 cut(s)	560
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	6 cut(s)	45, 74, 106, 111, 500, 594
Sau3AI	GATC	2 cut(s)	559, 633
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	1 cut(s)	115
SfaNI	GCATC	2 cut(s)	31, 379
SfcI	CTRYAG	1 cut(s)	300
SfoI	GGCGCC	1 cut(s)	109
SmlI	CTYRAG	3 cut(s)	8, 142, 260
SmoI	CTYRAG	3 cut(s)	8, 142, 260
Sse9I	AATT	2 cut(s)	155, 252
SsiI	CCGC	6 cut(s)	105, 111, 152, 187, 226, 344
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	495, 689
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	295, 584
TaqI	TCGA	2 cut(s)	209, 645
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	2 cut(s)	155, 252
TauI	GCSGC	2 cut(s)	108, 113
TfiI	GAWTC	3 cut(s)	4, 93, 546
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	2 cut(s)	298, 353
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	4 cut(s)	44, 73, 499, 593
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	3 cut(s)	353, 495, 506
TspRI	CASTG	2 cut(s)	298, 353
XagI	CCTNNNNNAGG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	642
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	495, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.