Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Reverse (-)

13338244 .. 13343631

Gene Structure 5388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCGGTGGTGTGGAAAGGGTGGGGCAGTCTGCAACCCAGTGCAGATGGTGGCCCCTGCTATTTGTTGTTTGGAAGAATATCAAGGTGCCCACCCGGGTTGTGGCTGCGTTGGGACGGCAGATTCAGTCTGCATCTTCGTCATTATAGGTGGAAGCGCTGTCCCTTCGAGTCGCCTGTTGATCATTAAGAAACAGTTGGTGGAAGTTGATGTTGAGAGTGATTGTGCTGTTCTTGTAGATGCAATGAAGGTTGTTAATGAAGAGGGGACTTCTGCTGATAGTGTGATGGAGGATTGTCGACACTTTAGCTCTGTAATCCAGTCTCCAGCCTACCATCCTGTGTATAGAGAAGCAAATTTGTCGGATACCCATGCTGATGGTGTCGCCGCTGCTGACCGTCGTCTTTTCGGAACCACAGAAGAGCCGCATGGGGATGAATCTAACAACGATGAGGATGACGCCGATAGGTTCAAACCTTACACACCGTCAAGCTCGCCGCAATTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACATACCAAGACCTCAAGTTCCTCTCTTCTTCGACATAGCACCAAAAGCAACAAGCCCAGATGAGAAGGTTCTCCCTTTTCATAAACTCGGTATGAAACCGCAGTGGAAAGCGATAGATTTCAAGTGGATAAGGGAGAACAAGGATGTTGTTGCTTGGGTAGGGCTTGAAAGGAGTTCTGTTGGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAGGCTTGTTCATAACTCTTTGTTCCATGCAGCTTTGTTGTGCCATTGGTAACAAGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCGACAAGCTCGTTGAGTTGAGAGGCCAACTCAATTCATTGCAAGAAGCCACAGGTGGGAAGCAGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGGTTCCTCAGGCTGCTGCTGCTTTGGCTCTTCAAATGGAATTTATGAGGTGTTTGGATGCTATGAGAGTTGATGATACGATCACGTATCGGAAAGTTGTTTTCATTTTGGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

400

Amino Acids

44.05

Weight (kDa)

5.96

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	299 - 369	1.6e-13	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	534
AccI	GTMKAC	2 cut(s)	298, 969
AciI	CCGC	7 cut(s)	4, 387, 425, 497, 511, 532, 680
AcsI	RAATTY	2 cut(s)	355, 1121
AcyI	GRCGYC	1 cut(s)	459
AfeI	AGCGCT	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	101, 1023
AflIII	ACRYGT	1 cut(s)	962
AgsI	TTSAA	8 cut(s)	472, 544, 703, 749, 800, 909, 1079, 1115
AluBI	AGCT	6 cut(s)	309, 492, 838, 874, 905, 976
AluI	AGCT	6 cut(s)	309, 492, 838, 874, 905, 976
Alw26I	GTCTC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	157
AoxI	GGCC	2 cut(s)	51, 991
ApeKI	GCWGC	9 cut(s)	105, 389, 835, 871, 1061, 1064, 1094, 1097, 1100
ApoI	RAATTY	2 cut(s)	355, 1121
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	2 cut(s)	95, 96
AsuNHI	GCTAGC	1 cut(s)	838
AvaI	CYCGRG	1 cut(s)	94
AxyI	CCTNAGG	1 cut(s)	1089
BaeGI	GKGCMC	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	9 cut(s)	92, 376, 847, 883, 1048, 1051, 1081, 1084, 1087
BccI	CCATC	4 cut(s)	40, 280, 342, 371
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciVI	GTATCC	1 cut(s)	358
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	2 cut(s)	95, 96
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	831, 839
BfoI	RGCGCY	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	358
Bme1390I	CCNGG	2 cut(s)	95, 96
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	4 cut(s)	54, 88, 412, 1086
BmrFI	CCNGG	2 cut(s)	95, 96
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	3 cut(s)	141, 229, 1129
BmtI	GCTAGC	1 cut(s)	842
BmuI	ACTGGG	1 cut(s)	32
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	981, 1013
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	579
BpuMI	CCSGG	2 cut(s)	95, 96
BsaAI	YACGTR	1 cut(s)	1167
BsaBI	GATNNNNATC	1 cut(s)	1037
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 1023
Bse1I	ACTGG	2 cut(s)	38, 319
Bse21I	CCTNAGG	1 cut(s)	1089
Bse3DI	GCAATG	2 cut(s)	249, 1004
Bse8I	GATNNNNATC	1 cut(s)	1037
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	5 cut(s)	334, 439, 460, 730, 1144
BseJI	GATNNNNATC	1 cut(s)	1037
BseLI	CCNNNNNNNGG	2 cut(s)	101, 1023
BseMI	GCAATG	2 cut(s)	249, 1004
BseMII	CTCAG	1 cut(s)	1103
BseNI	ACTGG	2 cut(s)	38, 319
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	9 cut(s)	92, 376, 847, 883, 1048, 1051, 1081, 1084, 1087
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	53, 993
BshNI	GGYRCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	3 cut(s)	127, 146, 280
BslI	CCNNNNNNNGG	2 cut(s)	101, 1023
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	3 cut(s)	127, 146, 280
BsnI	GGCC	2 cut(s)	53, 993
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	180, 1045, 1161
BspACI	CCGC	7 cut(s)	4, 387, 425, 497, 511, 532, 680
BspANI	GGCC	2 cut(s)	53, 993
BspCNI	CTCAG	1 cut(s)	1102
BspLI	GGNNCC	4 cut(s)	54, 88, 412, 1086
BspOI	GCTAGC	1 cut(s)	842
BspQI	GCTCTTC	3 cut(s)	414, 1080, 1116
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	534
BsrDI	GCAATG	2 cut(s)	249, 1004
BsrI	ACTGG	2 cut(s)	38, 319
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	180, 1045, 1161
BssNI	GRCGYC	1 cut(s)	459
Bst4CI	ACNGT	4 cut(s)	195, 398, 486, 955
Bst6I	CTCTTC	5 cut(s)	255, 414, 611, 1080, 1116
BstACI	GRCGYC	1 cut(s)	459
BstBAI	YACGTR	1 cut(s)	1167
BstC8I	GCNNGC	3 cut(s)	494, 840, 844
BstDEI	CTNAG	1 cut(s)	1089
BstF5I	GGATG	5 cut(s)	334, 439, 460, 730, 1144
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	3 cut(s)	183, 1048, 1164
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	180, 1045, 1161
BstMWI	GCNNNNNNNGC	4 cut(s)	626, 1070, 1100, 1106
BstNSI	RCATGY	1 cut(s)	966
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	93, 94
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	9 cut(s)	92, 376, 847, 883, 1048, 1051, 1081, 1084, 1087
BstV2I	GAAGAC	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	377
Bsu36I	CCTNAGG	1 cut(s)	1089
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	53, 993
BtsCI	GGATG	5 cut(s)	334, 439, 460, 730, 1144
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	2 cut(s)	45, 689
Cac8I	GCNNGC	3 cut(s)	494, 840, 844
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	52
Cfr9I	CCCGGG	1 cut(s)	94
CseI	GACGC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	4 cut(s)	371, 428, 868, 963
DdeI	CTNAG	1 cut(s)	1089
DpnI	GATC	3 cut(s)	182, 1047, 1163
DpnII	GATC	3 cut(s)	180, 1045, 1161
Eam1104I	CTCTTC	5 cut(s)	255, 414, 611, 1080, 1116
EarI	CTCTTC	5 cut(s)	255, 414, 611, 1080, 1116
Eco32I	GATATC	1 cut(s)	1035
Eco47III	AGCGCT	1 cut(s)	157
Eco81I	CCTNAGG	1 cut(s)	1089
Eco88I	CYCGRG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	1035
FaeI	CATG	4 cut(s)	374, 431, 871, 966
FaqI	GGGAC	3 cut(s)	127, 146, 280
FatI	CATG	4 cut(s)	370, 427, 867, 962
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	2 cut(s)	298, 969
FokI	GGATG	5 cut(s)	321, 446, 467, 737, 1151
FspBI	CTAG	2 cut(s)	831, 839
GlaI	GCGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	53, 993
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	4 cut(s)	374, 431, 871, 966
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	299, 970
HindII	GTYRAC	2 cut(s)	299, 970
HinfI	GANTC	3 cut(s)	122, 169, 437
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	299, 970
Hpy188I	TCNGA	3 cut(s)	364, 410, 1173
Hpy188III	TCNNGA	1 cut(s)	909
Hpy8I	GTNNAC	2 cut(s)	299, 970
Hpy99I	CGWCG	1 cut(s)	402
HpyAV	CCTTC	5 cut(s)	174, 241, 571, 640, 797
HpyCH4III	ACNGT	4 cut(s)	195, 398, 486, 955
HpyCH4IV	ACGT	1 cut(s)	1166
HpyCH4V	TGCA	6 cut(s)	33, 43, 132, 242, 871, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	626, 1070, 1100, 1106
HpyF3I	CTNAG	1 cut(s)	1089
HpySE526I	ACGT	1 cut(s)	1166
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	374, 431, 871, 966
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	180, 1045, 1161
LguI	GCTCTTC	3 cut(s)	414, 1080, 1116
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	9 cut(s)	92, 376, 847, 883, 1048, 1051, 1081, 1084, 1087
LweI	GCATC	3 cut(s)	141, 229, 1129
MaeI	CTAG	2 cut(s)	831, 839
MaeII	ACGT	1 cut(s)	1166
MaeIII	GTNAC	2 cut(s)	890, 898
MalI	GATC	3 cut(s)	182, 1047, 1163
MbiI	CCGCTC	1 cut(s)	534
MboI	GATC	3 cut(s)	180, 1045, 1161
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	4 cut(s)	355, 500, 1000, 1121
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	2 cut(s)	342, 742
MseI	TTAA	2 cut(s)	186, 255
MslI	CAYNNNNRTG	2 cut(s)	375, 432
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	95, 96
MwoI	GCNNNNNNNGC	4 cut(s)	626, 1070, 1100, 1106
NciI	CCSGG	2 cut(s)	95, 96
NdeII	GATC	3 cut(s)	180, 1045, 1161
NheI	GCTAGC	1 cut(s)	838
NlaIII	CATG	4 cut(s)	374, 431, 871, 966
NlaIV	GGNNCC	4 cut(s)	54, 88, 412, 1086
NspI	RCATGY	1 cut(s)	966
PciI	ACATGT	1 cut(s)	962
PciSI	GCTCTTC	3 cut(s)	414, 1080, 1116
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PfeI	GAWTC	2 cut(s)	122, 437
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	1167
PscI	ACATGT	1 cut(s)	962
PshAI	GACNNNNGTC	1 cut(s)	399
PspN4I	GGNNCC	4 cut(s)	54, 88, 412, 1086
PspPI	GGNCC	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	375, 432
SalI	GTCGAC	2 cut(s)	297, 968
SapI	GCTCTTC	3 cut(s)	414, 1080, 1116
SaqAI	TTAA	2 cut(s)	186, 255
Sau3AI	GATC	3 cut(s)	180, 1045, 1161
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	95, 96
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	3 cut(s)	141, 229, 1129
SmaI	CCCGGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	2 cut(s)	375, 432
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	4 cut(s)	355, 500, 1000, 1121
SsiI	CCGC	7 cut(s)	4, 387, 425, 497, 511, 532, 680
SspMI	CTAG	2 cut(s)	831, 839
StyD4I	CCNGG	2 cut(s)	93, 94
TaaI	ACNGT	4 cut(s)	195, 398, 486, 955
TaiI	ACGT	1 cut(s)	1169
TaqI	TCGA	4 cut(s)	167, 298, 612, 969
TasI	AATT	4 cut(s)	355, 500, 1000, 1121
TauI	GCSGC	3 cut(s)	389, 427, 499
TfiI	GAWTC	2 cut(s)	122, 437
Tru1I	TTAA	2 cut(s)	186, 255
Tru9I	TTAA	2 cut(s)	186, 255
TscAI	CASTG	2 cut(s)	45, 689
TseI	GCWGC	9 cut(s)	105, 389, 835, 871, 1061, 1064, 1094, 1097, 1100
TspDTI	ATGAA	9 cut(s)	260, 273, 450, 650, 689, 831, 841, 993, 1174
TspGWI	ACGGA	1 cut(s)	526
TspMI	CCCGGG	1 cut(s)	94
TspRI	CASTG	2 cut(s)	45, 689
XapI	RAATTY	2 cut(s)	355, 1121
XceI	RCATGY	1 cut(s)	966
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmaI	CCCGGG	1 cut(s)	94
XmiI	GTMKAC	2 cut(s)	298, 969
XspI	CTAG	2 cut(s)	831, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.