Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

16031161 .. 16091608

Gene Structure 60448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGGCTTGATGAATATTTGGACCCCTTTGAGGTAGAACACCAGATAGGAAGTTTTGGGGCAGCACTAGCAAAACATGGCAACTTCAAGAATAACAGGCATAAGGTGTTGAGATGGACAAGAGCGCTGTCGGAAGTTGCAAATCTATCTGGGTGGACTTTCACAAGCGGCCACACACCAAGACCTCAAGTTCCTCTCTTCTTATCAGCCTCGGCCGTACAAGCCACTGTCGCTACAGCTCCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGAAAGCCATAGATTTCAAGTGGATAAGGGAGAACAAGCATGTTGTTACTTGGGTAGGGCTTGAAAGAAGTTCTGTTAGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAAGGTTGTTCATAACTATTTGGGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

156

Amino Acids

17.88

Weight (kDa)

9.52

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	8 - 56	6.4e-07	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	168, 278
AcoI	YGGCCR	2 cut(s)	169, 213
AfaI	GTAC	1 cut(s)	219
AfeI	AGCGCT	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	88, 301, 347, 398
AluBI	AGCT	2 cut(s)	239, 436
AluI	AGCT	2 cut(s)	239, 436
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	2 cut(s)	169, 213
ApeKI	GCWGC	2 cut(s)	62, 433
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	22
AsuNHI	GCTAGC	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	74, 445
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	68, 429, 437
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	3 cut(s)	63, 169, 434
BlsI	GCNGC	3 cut(s)	64, 170, 435
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	24
BmtI	GCTAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	74, 445
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	171, 215
BsiEI	CGRYCG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	31
BsnI	GGCC	2 cut(s)	171, 215
BspACI	CCGC	2 cut(s)	168, 278
BspANI	GGCC	2 cut(s)	171, 215
BspLI	GGNNCC	1 cut(s)	24
BspOI	GCTAGC	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 221, 230, 245
BstNSI	RCATGY	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	74, 445
BstZI	CGGCCG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	171, 215
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	225, 287
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	77, 323
CviQI	GTAC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	169, 213
EagI	CGGCCG	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	213
FaeI	CATG	2 cut(s)	80, 326
FaiI	YATR	9 cut(s)	78, 102, 272, 293, 324, 383, 414, 422, 452
FatI	CATG	2 cut(s)	76, 322
Fnu4HI	GCNGC	3 cut(s)	63, 169, 434
Fsp4HI	GCNGC	3 cut(s)	63, 169, 434
FspBI	CTAG	3 cut(s)	68, 429, 437
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	3 cut(s)	63, 169, 434
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	171, 215
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	80, 326
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 221, 230, 245
Hsp92II	CATG	2 cut(s)	80, 326
HspAI	GCGC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	56, 82, 135, 270, 359
Lsp1109I	GCAGC	2 cut(s)	74, 445
MaeI	CTAG	3 cut(s)	68, 429, 437
MaeIII	GTNAC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	190, 410
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	5 cut(s)	25, 195, 204, 220, 457
MwoI	GCNNNNNNNGC	4 cut(s)	68, 221, 230, 245
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	80, 326
NlaIV	GGNNCC	1 cut(s)	24
NmeAIII	GCCGAG	1 cut(s)	191
NspI	RCATGY	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	64, 170, 435
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SatI	GCNGC	3 cut(s)	63, 169, 434
Sau96I	GGNCC	1 cut(s)	22
SetI	ASST	8 cut(s)	36, 108, 187, 241, 271, 438, 446, 468
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SsiI	CCGC	2 cut(s)	168, 278
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	3 cut(s)	68, 429, 437
TaaI	ACNGT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	171
TscAI	CASTG	2 cut(s)	232, 287
TseI	GCWGC	2 cut(s)	62, 433
TspDTI	ATGAA	4 cut(s)	27, 287, 429, 439
TspRI	CASTG	2 cut(s)	232, 287
VpaK11BI	GGWCC	1 cut(s)	22
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	3 cut(s)	68, 429, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.