Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Reverse (-)

54960002 .. 54973117

Gene Structure 13116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG381300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTACACAATGGTGAGAGTGAATAGTGCTGAGGTGCTTGCTATGTTGGACACGGGAGCCACAAATAAATTTGTCGATGCGAGAGAGGCAAAGAGATTGGGACTGAAAGGGGTTCAGAATTCTTGCAAGCTGAAGGCCGTGAACTCGGAGGCCAAACCAGTTCAAGGCACCGCAATGGTGGACTTGAAAGTGGGTGATTGGGAGGGCGAGTGCGGCTTGATGATAGTCCCTCTGAATAACTTTGATCTGATCCTTGGGATCGACTTCTTTGTGAAGGCGAAAGTAGGGTTGGTGCCTTACTTGAGTGGGATTTTCATAAATGATGAGAAATCCCCATGCTTTGTGAAAGCATCGTTTGCGGGTAGCTTGCTGGACAACAAACAAAAACATAAGCACCAAAAGCAACAATGCCCAAATGAGAAAGGTATGAAACCGCAGTTGAAAGCGGTAGATTTCAAGTGGATAAGGGAGAACAAGGATGTTGTTGCTTGGGTAGGGCTTGAAAGGAGTTCTAGTGGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTGGGCAGCTAGCAGGCTTGTTCATAACTCTTTGGGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.12

Weight (kDa)

8.52

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp_protease	PF09668	1 - 94	4.5e-06	Aspartyl protease
Asp_protease_2	PF13650	4 - 89	3e-09	Aspartyl protease
gag-asp_proteas	PF13975	5 - 90	2.8e-10	gag-polyprotein putative aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 292
AciI	CCGC	5 cut(s)	171, 213, 359, 434, 446
AclWI	GGATC	2 cut(s)	244, 266
AcsI	RAATTY	2 cut(s)	68, 118
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	6 cut(s)	164, 187, 442, 457, 503, 554
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	3 cut(s)	130, 366, 592
AluI	AGCT	3 cut(s)	130, 366, 592
AlwI	GGATC	2 cut(s)	244, 266
AoxI	GGCC	2 cut(s)	135, 150
ApeKI	GCWGC	1 cut(s)	589
ApoI	RAATTY	2 cut(s)	68, 118
AsuHPI	GGTGA	2 cut(s)	25, 206
AsuNHI	GCTAGC	1 cut(s)	592
BanI	GGYRCC	2 cut(s)	167, 292
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	601
BceAI	ACGGC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	513, 593
BisI	GCNGC	2 cut(s)	214, 590
BlsI	GCNGC	2 cut(s)	215, 591
BmiI	GGNNCC	3 cut(s)	58, 169, 294
BmsI	GCATC	2 cut(s)	67, 359
BmtI	GCTAGC	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	601
BshFI	GGCC	2 cut(s)	137, 152
BshNI	GGYRCC	2 cut(s)	167, 292
BslFI	GGGAC	2 cut(s)	114, 212
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	114, 212
BsnI	GGCC	2 cut(s)	137, 152
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	244, 249, 258
BspACI	CCGC	5 cut(s)	171, 213, 359, 434, 446
BspANI	GGCC	2 cut(s)	137, 152
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	58, 169, 294
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	2 cut(s)	244, 266
BspT107I	GGYRCC	2 cut(s)	167, 292
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	3 cut(s)	244, 249, 258
BssT1I	CCWWGG	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	5 cut(s)	39, 128, 368, 594, 598
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	247, 252, 261
BstMBI	GATC	3 cut(s)	244, 249, 258
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 213, 356, 400
BstV1I	GCAGC	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	137, 152
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	5 cut(s)	39, 128, 368, 594, 598
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	336
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	246, 251, 260
DpnII	GATC	3 cut(s)	244, 249, 258
Eco130I	CCWWGG	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	339
FaiI	YATR	9 cut(s)	44, 317, 337, 390, 428, 539, 570, 578, 608
FaqI	GGGAC	2 cut(s)	114, 212
FatI	CATG	1 cut(s)	335
FauI	CCCGC	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	214, 590
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	2 cut(s)	214, 590
FspBI	CTAG	2 cut(s)	513, 593
GluI	GCNGC	2 cut(s)	214, 590
HaeIII	GGCC	2 cut(s)	137, 152
Hin1II	CATG	1 cut(s)	339
HphI	GGTGA	2 cut(s)	25, 206
Hpy166II	GTNNAC	4 cut(s)	6, 142, 181, 518
Hpy188I	TCNGA	4 cut(s)	117, 148, 234, 249
Hpy8I	GTNNAC	4 cut(s)	6, 142, 181, 518
HpyAV	CCTTC	3 cut(s)	127, 268, 551
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 213, 356, 400
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	244, 249, 258
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	171, 356, 515, 570, 582
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	2 cut(s)	67, 359
MaeI	CTAG	2 cut(s)	513, 593
MalI	GATC	3 cut(s)	246, 251, 260
MboI	GATC	3 cut(s)	244, 249, 258
MboII	GAAGA	1 cut(s)	566
MluCI	AATT	2 cut(s)	68, 118
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	25, 79, 142, 196, 240, 613
MslI	CAYNNNNRTG	2 cut(s)	11, 173
MwoI	GCNNNNNNNGC	4 cut(s)	86, 213, 356, 400
NdeII	GATC	3 cut(s)	244, 249, 258
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	3 cut(s)	58, 169, 294
OliI	CACNNNNGTG	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	215, 591
PspN4I	GGNNCC	3 cut(s)	58, 169, 294
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	11, 173
SatI	GCNGC	2 cut(s)	214, 590
Sau3AI	GATC	3 cut(s)	244, 249, 258
SetI	ASST	6 cut(s)	36, 132, 368, 427, 594, 624
SfaNI	GCATC	2 cut(s)	67, 359
SmiMI	CAYNNNNRTG	2 cut(s)	11, 173
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	68, 118
SsiI	CCGC	5 cut(s)	171, 213, 359, 434, 446
SspMI	CTAG	2 cut(s)	513, 593
StyI	CCWWGG	1 cut(s)	253
TaqI	TCGA	2 cut(s)	75, 261
TasI	AATT	2 cut(s)	68, 118
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	589
TspDTI	ATGAA	4 cut(s)	304, 443, 585, 595
XapI	RAATTY	2 cut(s)	68, 118
XspI	CTAG	2 cut(s)	513, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.