Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

3148612 .. 3152629

Gene Structure 4018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGTTGTCCAGATTTGTCGGATACCCATGCTGATGGTGTCGCCGCTGCTGACCGTCGTCTTTTCGGAACCACAGAAGAGCCGCATGGGGATGAATCTAACGACGATGAGGATGACGCCGATAGGTTCAAACCTTACACACCGTCAAGCTCGCCGCAATTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACATACCAAGACCTCAAGTTCCTCTCTTCTTCGACATAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGAAAGCGATAGATTTCAAGTGGATAAGGGAGAACAAGGATGTTGTTGCTTGGGTAGGGCTTGAAAGGAGTTCTGTTGGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAGGCTTGTTCATAACTCTTTGTTCCATGGAGCTTTGTCGTGCCATTGGTAACAAGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCGACAAGCTCGTTGAGTTGAGAGGCCAACTCAATTCATTGCAAGAAGCTACAGGTGGGAAGCGGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGGTTCCTCAGGCTGCTGCTGCTTTGGCTCTTCAAATGGAATTTATGAGGTGTTTGGATGCTATGAGAGTTGATGATACGATCACGGATATGCAGCTCAGGAGTTTGCCAAGTAGGGGGTTTAAGCCAGGCGAACTAGCAGTAATTTTCAAAGAGGCGGGGTTTCTGAATCCAAATGAAGTTCACATTTTCGGCTATGCAAGGACTAAGATTTCTTATGATGAGCTAAGAAGCCGCATACATATCTCATCCAAGGAGCTTCGTCCAAGGACTTGGATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

334

Amino Acids

37.59

Weight (kDa)

7.61

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	178 - 248	9.5e-14	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	9 cut(s)	45, 83, 155, 169, 190, 317, 667, 875, 952
AcsI	RAATTY	1 cut(s)	758
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	833
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	9 cut(s)	130, 202, 340, 386, 437, 546, 716, 752, 868
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	9 cut(s)	150, 475, 511, 542, 613, 653, 814, 943, 976
AluI	AGCT	9 cut(s)	150, 475, 511, 542, 613, 653, 814, 943, 976
AoxI	GGCC	1 cut(s)	628
ApeKI	GCWGC	8 cut(s)	47, 472, 698, 701, 731, 734, 737, 811
ApoI	RAATTY	1 cut(s)	758
AsuNHI	GCTAGC	1 cut(s)	475
AxyI	CCTNAGG	1 cut(s)	726
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	8 cut(s)	34, 484, 685, 688, 718, 721, 724, 823
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	1 cut(s)	16
BfaI	CTAG	3 cut(s)	468, 476, 854
BfmI	CTRYAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	846
BmiI	GGNNCC	2 cut(s)	70, 723
BmrFI	CCNGG	1 cut(s)	846
BmsI	GCATC	1 cut(s)	766
BmtI	GCTAGC	1 cut(s)	479
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	618, 650
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	504, 969, 983
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	3 cut(s)	504, 969, 983
BseGI	GGATG	6 cut(s)	97, 118, 367, 781, 965, 999
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	2 cut(s)	740, 829
BseXI	GCAGC	8 cut(s)	34, 484, 685, 688, 718, 721, 724, 823
BshFI	GGCC	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	833
BsnI	GGCC	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	682, 798
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	9 cut(s)	45, 83, 155, 169, 190, 317, 667, 875, 952
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	2 cut(s)	739, 828
BspLI	GGNNCC	2 cut(s)	70, 723
BspOI	GCTAGC	1 cut(s)	479
BspQI	GCTCTTC	3 cut(s)	72, 717, 753
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	641
BssECI	CCNNGG	3 cut(s)	504, 969, 983
BssMI	GATC	2 cut(s)	682, 798
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	3 cut(s)	504, 969, 983
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	3 cut(s)	56, 144, 592
Bst6I	CTCTTC	4 cut(s)	72, 269, 717, 753
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	152, 477, 481
BstDEI	CTNAG	4 cut(s)	726, 815, 924, 944
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	6 cut(s)	97, 118, 367, 781, 965, 999
BstKTI	GATC	2 cut(s)	685, 801
BstMBI	GATC	2 cut(s)	682, 798
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 707, 737, 743
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	603
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	844
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	8 cut(s)	34, 484, 685, 688, 718, 721, 724, 823
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	2 cut(s)	35, 990
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	630
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	6 cut(s)	97, 118, 367, 781, 965, 999
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	152, 477, 481
CseI	GACGC	1 cut(s)	125
CviAII	CATG	4 cut(s)	29, 86, 505, 600
DdeI	CTNAG	4 cut(s)	726, 815, 924, 944
DpnI	GATC	2 cut(s)	684, 800
DpnII	GATC	2 cut(s)	682, 798
Eam1104I	CTCTTC	4 cut(s)	72, 269, 717, 753
EarI	CTCTTC	4 cut(s)	72, 269, 717, 753
Eco130I	CCWWGG	3 cut(s)	504, 969, 983
Eco32I	GATATC	1 cut(s)	672
Eco81I	CCTNAGG	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	844
EcoRV	GATATC	1 cut(s)	672
EcoT14I	CCWWGG	3 cut(s)	504, 969, 983
ErhI	CCWWGG	3 cut(s)	504, 969, 983
FaeI	CATG	4 cut(s)	32, 89, 508, 603
FatI	CATG	4 cut(s)	28, 85, 504, 599
FauI	CCCGC	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	606
FokI	GGATG	5 cut(s)	104, 125, 374, 788, 952
FspBI	CTAG	3 cut(s)	468, 476, 854
HaeIII	GGCC	1 cut(s)	630
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	32, 89, 508, 603
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	2 cut(s)	95, 886
Hpy166II	GTNNAC	2 cut(s)	607, 901
Hpy188I	TCNGA	3 cut(s)	22, 68, 885
Hpy188III	TCNNGA	3 cut(s)	11, 546, 817
Hpy8I	GTNNAC	2 cut(s)	607, 901
Hpy99I	CGWCG	2 cut(s)	60, 107
HpyAV	CCTTC	2 cut(s)	229, 434
HpyCH4III	ACNGT	3 cut(s)	56, 144, 592
HpyCH4V	TGCA	3 cut(s)	646, 811, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 707, 737, 743
HpyF3I	CTNAG	4 cut(s)	726, 815, 924, 944
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	32, 89, 508, 603
Kzo9I	GATC	2 cut(s)	682, 798
LguI	GCTCTTC	3 cut(s)	72, 717, 753
LmnI	GCTCC	3 cut(s)	197, 508, 973
LpnPI	CCDG	9 cut(s)	24, 309, 398, 465, 642, 713, 802, 831, 858
Lsp1109I	GCAGC	8 cut(s)	34, 484, 685, 688, 718, 721, 724, 823
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	3 cut(s)	468, 476, 854
MaeIII	GTNAC	2 cut(s)	527, 535
MalI	GATC	2 cut(s)	684, 800
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	2 cut(s)	682, 798
MboII	GAAGA	8 cut(s)	89, 171, 174, 256, 259, 449, 704, 740
MluCI	AATT	4 cut(s)	158, 637, 758, 861
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	9 cut(s)	103, 233, 261, 270, 585, 620, 735, 759, 865
MseI	TTAA	1 cut(s)	840
MslI	CAYNNNNRTG	3 cut(s)	33, 90, 806
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	4 cut(s)	284, 707, 737, 743
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	2 cut(s)	682, 798
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	4 cut(s)	32, 89, 508, 603
NlaIV	GGNNCC	2 cut(s)	70, 723
NspI	RCATGY	1 cut(s)	603
PciI	ACATGT	1 cut(s)	599
PciSI	GCTCTTC	3 cut(s)	72, 717, 753
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	95, 886
PscI	ACATGT	1 cut(s)	599
PshAI	GACNNNNGTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	70, 723
RseI	CAYNNNNRTG	3 cut(s)	33, 90, 806
SalI	GTCGAC	1 cut(s)	605
SapI	GCTCTTC	3 cut(s)	72, 717, 753
SaqAI	TTAA	1 cut(s)	840
Sau3AI	GATC	2 cut(s)	682, 798
ScrFI	CCNGG	1 cut(s)	846
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	654
SmiMI	CAYNNNNRTG	3 cut(s)	33, 90, 806
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	4 cut(s)	158, 637, 758, 861
SsiI	CCGC	9 cut(s)	45, 83, 155, 169, 190, 317, 667, 875, 952
SspMI	CTAG	3 cut(s)	468, 476, 854
StyD4I	CCNGG	1 cut(s)	844
StyI	CCWWGG	3 cut(s)	504, 969, 983
TaaI	ACNGT	3 cut(s)	56, 144, 592
TaqI	TCGA	2 cut(s)	270, 606
TasI	AATT	4 cut(s)	158, 637, 758, 861
TauI	GCSGC	4 cut(s)	47, 85, 157, 954
TfiI	GAWTC	2 cut(s)	95, 886
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	8 cut(s)	47, 472, 698, 701, 731, 734, 737, 811
TspDTI	ATGAA	6 cut(s)	108, 326, 468, 478, 630, 909
TspGWI	ACGGA	2 cut(s)	184, 818
TspRI	CASTG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	758
XceI	RCATGY	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	3 cut(s)	468, 476, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.