Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Reverse (-)

409038 .. 417337

Gene Structure 8300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGTTGTCCAGATTTGTCGGATACCCATGCTGATGGTGTCGCCGCTGCTGACCGTCATCTTTTCGGAACCACAGAAGAGCCTCATGGGGATGAATCTAACGACGATGAGGATGACGCCGATAGGTTCAAACCTTACACACCGTCAAGCTCGCCGCAATTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACATACCAAGACCTCAAGTTCCTCTCTTCTTCGACATAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGAAAGCGATAGATTTCAAGTGGATAAGGGAGAACAAGGATGTTGTTGCTTGGGTAGGGCTTGAAAGGAGTTCTGTTGGACATTGGTGGCTAGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAGGCTTGTTCATAACTCTTTGTTCCATGCAGCTTTGTCGTGCTATTGGTAACAAGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCAACAAGCTCGTTGAGTTGAGAGGCCAACTCAATTCATTGCAAGAAGCTACAGGTAGGAAGCGGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGGTTCCTCAGGCTGCTGCTGCTTTGGCTCTTCAAATGGAATTTATGATGTGTTTGGATGCTATGAGAGTTGATGATACGATCACTGGCTTTGCTTTTTGTCGGTTGTTCTTTGAGGGGTTTCTGAATCCAAATGAAGTTCACATTTTCGGCTATGCAAGGACTAAGATTTCTTATGATGAGCTAAGAAGCCGCATACGTGGATATCTCATCCAAGGAGCTTCGTCCAAGGACTTGGATGATGTAACCAAATTTTTGCAACTGGCTTTCTTGGCCGGAGGTGTCCCAAACTTGGGCCTTAACGATCTAATCATCGACGTGGATGCTCCAGGTGGCGAACTCGACACCAATGGTGGACTTAGACTCGAGGTTGAACTCGTTGCTCATGAACCAGGACAACAAGTCGGATTTGCCGACCTTGAAGTGGTAGTCATCTTCCAACCTGTAGGCCATGTCGAAGAGCCGGAGAGACTTTTCGGTTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

402

Amino Acids

44.77

Weight (kDa)

5.45

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	178 - 248	1.4e-13	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AciI	CCGC	7 cut(s)	45, 155, 169, 190, 317, 667, 910
AcoI	YGGCCR	1 cut(s)	990
AcsI	RAATTY	2 cut(s)	758, 968
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	1009, 1010, 1141
AflIII	ACRYGT	1 cut(s)	599
AhdI	GACNNNNNGTC	1 cut(s)	1118
AjiI	CACGTC	1 cut(s)	1036
AjnI	CCWGG	2 cut(s)	1045, 1108
AluBI	AGCT	8 cut(s)	150, 475, 511, 542, 613, 653, 901, 938
AluI	AGCT	8 cut(s)	150, 475, 511, 542, 613, 653, 901, 938
Alw26I	GTCTC	1 cut(s)	1180
Ama87I	CYCGRG	1 cut(s)	1082
AoxI	GGCC	4 cut(s)	628, 990, 1012, 1165
ApeKI	GCWGC	8 cut(s)	47, 472, 508, 698, 701, 731, 734, 737
ApoI	RAATTY	2 cut(s)	758, 968
AspS9I	GGNCC	1 cut(s)	1012
AsuNHI	GCTAGC	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	1082
AxyI	CCTNAGG	1 cut(s)	726
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	8 cut(s)	34, 484, 520, 685, 688, 718, 721, 724
BccI	CCATC	1 cut(s)	29
BcgI	CGANNNNNNTGC	4 cut(s)	497, 531, 1022, 1056
BciT130I	CCWGG	2 cut(s)	1047, 1110
BciVI	GTATCC	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	1180
BfaI	CTAG	3 cut(s)	413, 468, 476
BfmI	CTRYAG	2 cut(s)	654, 1161
BfuI	GTATCC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	1047, 1110
BmeRI	GACNNNNNGTC	1 cut(s)	1118
BmeT110I	CYCGRG	1 cut(s)	1082
BmgBI	CACGTC	1 cut(s)	1036
BmgT120I	GGNCC	1 cut(s)	1012
BmiI	GGNNCC	2 cut(s)	70, 723
BmrFI	CCNGG	2 cut(s)	1047, 1110
BmsI	GCATC	2 cut(s)	766, 1030
BmtI	GCTAGC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	618, 650
BpmI	CTGGAG	1 cut(s)	1029
BpuEI	CTTGAG	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	931, 945
Bsc4I	CCNNNNNNNGG	3 cut(s)	1009, 1010, 1141
Bse1I	ACTGG	2 cut(s)	808, 984
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	1047, 1110
BseDI	CCNNGG	2 cut(s)	931, 945
BseGI	GGATG	7 cut(s)	97, 118, 367, 781, 927, 961, 1045
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	3 cut(s)	1009, 1010, 1141
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	2 cut(s)	808, 984
BseXI	GCAGC	8 cut(s)	34, 484, 520, 685, 688, 718, 721, 724
BshFI	GGCC	4 cut(s)	630, 992, 1014, 1167
BsiHKCI	CYCGRG	1 cut(s)	1082
BsiSI	CCGG	2 cut(s)	993, 1181
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	3 cut(s)	1009, 1010, 1141
BsmAI	GTCTC	1 cut(s)	1180
BsmFI	GGGAC	1 cut(s)	986
BsnI	GGCC	4 cut(s)	630, 992, 1014, 1167
BsoBI	CYCGRG	1 cut(s)	1082
Bsp143I	GATC	3 cut(s)	682, 798, 1021
BspACI	CCGC	7 cut(s)	45, 155, 169, 190, 317, 667, 910
BspANI	GGCC	4 cut(s)	630, 992, 1014, 1167
BspCNI	CTCAG	1 cut(s)	739
BspHI	TCATGA	1 cut(s)	1102
BspLI	GGNNCC	2 cut(s)	70, 723
BspOI	GCTAGC	1 cut(s)	479
BspQI	GCTCTTC	4 cut(s)	72, 717, 753, 1170
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	808, 984
BssECI	CCNNGG	2 cut(s)	931, 945
BssMI	GATC	3 cut(s)	682, 798, 1021
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	931, 945
Bst2UI	CCWGG	2 cut(s)	1047, 1110
Bst4CI	ACNGT	3 cut(s)	56, 144, 592
Bst6I	CTCTTC	5 cut(s)	72, 269, 717, 753, 1170
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	917
BstC8I	GCNNGC	3 cut(s)	152, 477, 481
BstDEI	CTNAG	4 cut(s)	726, 882, 902, 1076
BstF5I	GGATG	7 cut(s)	97, 118, 367, 781, 927, 961, 1045
BstKTI	GATC	3 cut(s)	685, 801, 1024
BstMAI	GTCTC	1 cut(s)	1180
BstMBI	GATC	3 cut(s)	682, 798, 1021
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 707, 737, 743, 989
BstNI	CCWGG	2 cut(s)	1047, 1110
BstNSI	RCATGY	1 cut(s)	603
BstSCI	CCNGG	2 cut(s)	1045, 1108
BstSFI	CTRYAG	2 cut(s)	654, 1161
BstV1I	GCAGC	8 cut(s)	34, 484, 520, 685, 688, 718, 721, 724
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	2 cut(s)	35, 952
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	4 cut(s)	630, 992, 1014, 1167
BtrI	CACGTC	1 cut(s)	1036
BtsCI	GGATG	7 cut(s)	97, 118, 367, 781, 927, 961, 1045
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	326, 801
Cac8I	GCNNGC	3 cut(s)	152, 477, 481
CciI	TCATGA	1 cut(s)	1102
Cfr13I	GGNCC	1 cut(s)	1012
CseI	GACGC	1 cut(s)	125
CviAII	CATG	6 cut(s)	29, 86, 505, 600, 1103, 1169
DdeI	CTNAG	4 cut(s)	726, 882, 902, 1076
DpnI	GATC	3 cut(s)	684, 800, 1023
DpnII	GATC	3 cut(s)	682, 798, 1021
DriI	GACNNNNNGTC	1 cut(s)	1118
EaeI	YGGCCR	1 cut(s)	990
Eam1104I	CTCTTC	5 cut(s)	72, 269, 717, 753, 1170
Eam1105I	GACNNNNNGTC	1 cut(s)	1118
EarI	CTCTTC	5 cut(s)	72, 269, 717, 753, 1170
Eco130I	CCWWGG	2 cut(s)	931, 945
Eco32I	GATATC	2 cut(s)	672, 923
Eco81I	CCTNAGG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	1082
EcoRII	CCWGG	2 cut(s)	1045, 1108
EcoRV	GATATC	2 cut(s)	672, 923
EcoT14I	CCWWGG	2 cut(s)	931, 945
ErhI	CCWWGG	2 cut(s)	931, 945
FaeI	CATG	6 cut(s)	32, 89, 508, 603, 1106, 1172
FaqI	GGGAC	1 cut(s)	986
FatI	CATG	6 cut(s)	28, 85, 504, 599, 1102, 1168
FokI	GGATG	7 cut(s)	104, 125, 374, 788, 914, 968, 1052
FspBI	CTAG	3 cut(s)	413, 468, 476
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	4 cut(s)	630, 992, 1014, 1167
HapII	CCGG	2 cut(s)	993, 1181
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	6 cut(s)	32, 89, 508, 603, 1106, 1172
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	3 cut(s)	95, 844, 1080
HpaII	CCGG	2 cut(s)	993, 1181
Hpy166II	GTNNAC	3 cut(s)	607, 859, 1073
Hpy188I	TCNGA	4 cut(s)	22, 68, 843, 1124
Hpy188III	TCNNGA	3 cut(s)	11, 546, 1103
Hpy8I	GTNNAC	3 cut(s)	607, 859, 1073
Hpy99I	CGWCG	2 cut(s)	107, 1037
HpyAV	CCTTC	2 cut(s)	229, 434
HpyCH4III	ACNGT	3 cut(s)	56, 144, 592
HpyCH4IV	ACGT	2 cut(s)	916, 1035
HpyCH4V	TGCA	4 cut(s)	508, 646, 875, 976
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 707, 737, 743, 989
HpyF3I	CTNAG	4 cut(s)	726, 882, 902, 1076
HpySE526I	ACGT	2 cut(s)	916, 1035
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	32, 89, 508, 603, 1106, 1172
Kzo9I	GATC	3 cut(s)	682, 798, 1021
LguI	GCTCTTC	4 cut(s)	72, 717, 753, 1170
LmnI	GCTCC	3 cut(s)	197, 935, 1048
Lsp1109I	GCAGC	8 cut(s)	34, 484, 520, 685, 688, 718, 721, 724
LweI	GCATC	2 cut(s)	766, 1030
MaeI	CTAG	3 cut(s)	413, 468, 476
MaeII	ACGT	2 cut(s)	916, 1035
MaeIII	GTNAC	3 cut(s)	527, 535, 961
MalI	GATC	3 cut(s)	684, 800, 1023
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	3 cut(s)	682, 798, 1021
MluCI	AATT	4 cut(s)	158, 637, 758, 968
MlyI	GAGTC	1 cut(s)	1074
MmeI	TCCRAC	4 cut(s)	379, 1102, 1178, 1180
MseI	TTAA	1 cut(s)	1017
MslI	CAYNNNNRTG	3 cut(s)	33, 90, 1034
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	993, 1181
MspR9I	CCNGG	2 cut(s)	1047, 1110
MvaI	CCWGG	2 cut(s)	1047, 1110
MwoI	GCNNNNNNNGC	5 cut(s)	284, 707, 737, 743, 989
NdeII	GATC	3 cut(s)	682, 798, 1021
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	6 cut(s)	32, 89, 508, 603, 1106, 1172
NlaIV	GGNNCC	2 cut(s)	70, 723
NspI	RCATGY	1 cut(s)	603
PaeR7I	CTCGAG	1 cut(s)	1082
PagI	TCATGA	1 cut(s)	1102
PciI	ACATGT	1 cut(s)	599
PciSI	GCTCTTC	4 cut(s)	72, 717, 753, 1170
PcsI	WCGNNNNNNNCGW	1 cut(s)	1128
PfeI	GAWTC	2 cut(s)	95, 844
PleI	GAGTC	1 cut(s)	1074
PpsI	GAGTC	1 cut(s)	1074
Ppu21I	YACGTR	1 cut(s)	917
PscI	ACATGT	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	1045, 1108
PspGI	CCWGG	2 cut(s)	1045, 1108
PspN4I	GGNNCC	2 cut(s)	70, 723
PspPI	GGNCC	1 cut(s)	1012
PspXI	VCTCGAGB	1 cut(s)	1082
RseI	CAYNNNNRTG	3 cut(s)	33, 90, 1034
SapI	GCTCTTC	4 cut(s)	72, 717, 753, 1170
SaqAI	TTAA	1 cut(s)	1017
Sau3AI	GATC	3 cut(s)	682, 798, 1021
Sau96I	GGNCC	1 cut(s)	1012
SchI	GAGTC	1 cut(s)	1074
ScrFI	CCNGG	2 cut(s)	1047, 1110
SfaNI	GCATC	2 cut(s)	766, 1030
SfcI	CTRYAG	2 cut(s)	654, 1161
Sfr274I	CTCGAG	1 cut(s)	1082
SlaI	CTCGAG	1 cut(s)	1082
SmiMI	CAYNNNNRTG	3 cut(s)	33, 90, 1034
SmlI	CTYRAG	2 cut(s)	252, 1082
SmoI	CTYRAG	2 cut(s)	252, 1082
Sse9I	AATT	4 cut(s)	158, 637, 758, 968
SsiI	CCGC	7 cut(s)	45, 155, 169, 190, 317, 667, 910
SspMI	CTAG	3 cut(s)	413, 468, 476
StyD4I	CCNGG	2 cut(s)	1045, 1108
StyI	CCWWGG	2 cut(s)	931, 945
TaaI	ACNGT	3 cut(s)	56, 144, 592
TaiI	ACGT	2 cut(s)	919, 1038
TaqI	TCGA	5 cut(s)	270, 1032, 1059, 1083, 1173
TasI	AATT	4 cut(s)	158, 637, 758, 968
TauI	GCSGC	3 cut(s)	47, 157, 912
TfiI	GAWTC	2 cut(s)	95, 844
Tru1I	TTAA	1 cut(s)	1017
Tru9I	TTAA	1 cut(s)	1017
TscAI	CASTG	2 cut(s)	326, 808
TseI	GCWGC	8 cut(s)	47, 472, 508, 698, 701, 731, 734, 737
TspDTI	ATGAA	7 cut(s)	108, 326, 468, 478, 630, 867, 1119
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	326, 808
XapI	RAATTY	2 cut(s)	758, 968
XceI	RCATGY	1 cut(s)	603
XhoI	CTCGAG	1 cut(s)	1082
XspI	CTAG	3 cut(s)	413, 468, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.