Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010630

Physical Location & Seq

Genomic Coordinates Forward (+)

67186724 .. 67189178

Gene Structure 2455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGTTGTCCAGATTTGTCGGATACCCATACTGATGGTGTCGCCGCTGCTGACCGTCGTCTTTTCGGAACCACAGAAGAGCCGCATGGGGATGAATCTAACGACGATGAGGATGACGCCGATAGGTTCAAACCTTACACACCGTCAAGCTCGCCGCAATTCCTTTACCGCAACCCGTCTTCTTCTTTCCGCTCCGTTTTCAAACCATTATCCAAAACCTTCCTCTACTGCCATAGCCACATACCAAGACCTCAAGTTCCTCTCTTCTTCGACATAGCACCAAAAGCAACAAGCCCAGATGAGAAAGGTATGAAACCGCAGTGGATAAGGGAGAACAAGGATATTGTTGCTTGGGTAGGGCTTGAAATGAGTTCTGTTGGACATTGGTGGCTGGATAATATAGGAAAGGCTTTTGAAGAAGGAAAAACTTATGAATGTATGGGTTCTAGGCAGCTAGCAGGCTTGTTCATAACTCTTTGTTCCATGCAGCTTTGTTGTGCCATTGGTAACAAGGTTACAGCTTCAAGATTATTATTCTCAAAGCAAACTATTCCTCATTATTATTTGACAGTAGATACATGTGTCGACAAGCTCGTTGAGTTGAGAGGCCAACTCAATTCATTGCAAGAAGCTACAGGTGGGAAGCAGATATCTATCAATGATCTTGTAATAAAGGCTGCTGCTTTGGCTCTTCAAAAGGTTCCTCAGGCTGCTGCTGCTTTGGCTCTTCAAATGGAATTTATGAGGTGTTTGGATGCTATGAGAGTTGATGATACGATCACGTATCGGAAAGTTGTTTTCACTTTGGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

272

Amino Acids

30.24

Weight (kDa)

5.71

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	171 - 241	8.2e-14	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010630)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000653 RLG00000007076 RLG00000014344 RLG00000015512 RLG00000021740 RLG00000022452 RLG00000033670 RLG00000034061 RLG00000034886
rosa_roxburghii	Rroxscaffold_2G00091200 Rroxscaffold_4G00297850 Rroxscaffold_7G00177930 Rroxscaffold_7G00179160 Rroxscaffold_7G00179170
rosa_rugosa	Rorug06G0090500
rosa_samantha	Rh2DG381300 Rh6BG134200 Rh6DG033000 Rh6DG119800 Rh7AG392000 Rh7CG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	6 cut(s)	45, 83, 155, 169, 190, 317
AcsI	RAATTY	1 cut(s)	737
AcyI	GRCGYC	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	7 cut(s)	130, 202, 365, 416, 525, 695, 731
AluBI	AGCT	6 cut(s)	150, 454, 490, 521, 592, 632
AluI	AGCT	6 cut(s)	150, 454, 490, 521, 592, 632
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	8 cut(s)	47, 451, 487, 677, 680, 710, 713, 716
ApoI	RAATTY	1 cut(s)	737
AsuNHI	GCTAGC	1 cut(s)	454
AxyI	CCTNAGG	1 cut(s)	705
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	8 cut(s)	34, 463, 499, 664, 667, 697, 700, 703
BccI	CCATC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	16
BfaI	CTAG	2 cut(s)	447, 455
BfmI	CTRYAG	1 cut(s)	633
BfuI	GTATCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	70, 702
BmsI	GCATC	1 cut(s)	745
BmtI	GCTAGC	1 cut(s)	458
BoxI	GACNNNNGTC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	597, 629
BpuEI	CTTGAG	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	783
BsaBI	GATNNNNATC	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	620
Bse8I	GATNNNNATC	1 cut(s)	653
BseGI	GGATG	3 cut(s)	97, 118, 760
BseJI	GATNNNNATC	1 cut(s)	653
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	719
BseXI	GCAGC	8 cut(s)	34, 463, 499, 664, 667, 697, 700, 703
BshFI	GGCC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	609
Bsp143I	GATC	2 cut(s)	661, 777
BspACI	CCGC	6 cut(s)	45, 83, 155, 169, 190, 317
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	718
BspLI	GGNNCC	2 cut(s)	70, 702
BspOI	GCTAGC	1 cut(s)	458
BspQI	GCTCTTC	3 cut(s)	72, 696, 732
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	620
BssMI	GATC	2 cut(s)	661, 777
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	56, 144, 571
Bst6I	CTCTTC	4 cut(s)	72, 269, 696, 732
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	783
BstC8I	GCNNGC	3 cut(s)	152, 456, 460
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	3 cut(s)	97, 118, 760
BstKTI	GATC	2 cut(s)	664, 780
BstMBI	GATC	2 cut(s)	661, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 686, 716, 722
BstNSI	RCATGY	1 cut(s)	582
BstPAI	GACNNNNGTC	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	8 cut(s)	34, 463, 499, 664, 667, 697, 700, 703
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	97, 118, 760
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	152, 456, 460
CseI	GACGC	1 cut(s)	125
CviAII	CATG	3 cut(s)	86, 484, 579
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	2 cut(s)	663, 779
DpnII	GATC	2 cut(s)	661, 777
Eam1104I	CTCTTC	4 cut(s)	72, 269, 696, 732
EarI	CTCTTC	4 cut(s)	72, 269, 696, 732
Eco32I	GATATC	1 cut(s)	651
Eco81I	CCTNAGG	1 cut(s)	705
EcoRV	GATATC	1 cut(s)	651
FaeI	CATG	3 cut(s)	89, 487, 582
FatI	CATG	3 cut(s)	85, 483, 578
FblI	GTMKAC	1 cut(s)	585
FokI	GGATG	3 cut(s)	104, 125, 767
FspBI	CTAG	2 cut(s)	447, 455
HaeIII	GGCC	1 cut(s)	609
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	89, 487, 582
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	3 cut(s)	22, 68, 789
Hpy188III	TCNNGA	2 cut(s)	11, 525
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	2 cut(s)	60, 107
HpyAV	CCTTC	2 cut(s)	229, 413
HpyCH4III	ACNGT	3 cut(s)	56, 144, 571
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	2 cut(s)	487, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 686, 716, 722
HpyF3I	CTNAG	1 cut(s)	705
HpySE526I	ACGT	1 cut(s)	782
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	89, 487, 582
Kzo9I	GATC	2 cut(s)	661, 777
LguI	GCTCTTC	3 cut(s)	72, 696, 732
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	6 cut(s)	24, 309, 377, 444, 621, 692
Lsp1109I	GCAGC	8 cut(s)	34, 463, 499, 664, 667, 697, 700, 703
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	2 cut(s)	447, 455
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	2 cut(s)	506, 514
MalI	GATC	2 cut(s)	663, 779
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	2 cut(s)	661, 777
MboII	GAAGA	8 cut(s)	89, 171, 174, 256, 259, 428, 683, 719
MluCI	AATT	3 cut(s)	158, 616, 737
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	8 cut(s)	103, 233, 261, 270, 564, 599, 714, 738
MslI	CAYNNNNRTG	2 cut(s)	33, 90
MspA1I	CMGCKG	1 cut(s)	47
MwoI	GCNNNNNNNGC	4 cut(s)	284, 686, 716, 722
NdeII	GATC	2 cut(s)	661, 777
NheI	GCTAGC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	89, 487, 582
NlaIV	GGNNCC	2 cut(s)	70, 702
NspI	RCATGY	1 cut(s)	582
PciI	ACATGT	1 cut(s)	578
PciSI	GCTCTTC	3 cut(s)	72, 696, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	783
PscI	ACATGT	1 cut(s)	578
PshAI	GACNNNNGTC	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	70, 702
RseI	CAYNNNNRTG	2 cut(s)	33, 90
SalI	GTCGAC	1 cut(s)	584
SapI	GCTCTTC	3 cut(s)	72, 696, 732
Sau3AI	GATC	2 cut(s)	661, 777
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	2 cut(s)	33, 90
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	158, 616, 737
SsiI	CCGC	6 cut(s)	45, 83, 155, 169, 190, 317
SspMI	CTAG	2 cut(s)	447, 455
TaaI	ACNGT	3 cut(s)	56, 144, 571
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	2 cut(s)	270, 585
TasI	AATT	3 cut(s)	158, 616, 737
TauI	GCSGC	3 cut(s)	47, 85, 157
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	8 cut(s)	47, 451, 487, 677, 680, 710, 713, 716
TspDTI	ATGAA	5 cut(s)	108, 326, 447, 457, 609
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	737
XceI	RCATGY	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	2 cut(s)	447, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.