Prupe.8G112400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0020411
Physical Location & Seq
Reverse (-)
14116440 .. 14117151
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G112400.1

Sequence Viewer

Length: 243 bp
ATGTCTGCAGTGGCAAGTATATGGAGTAGTGAGATGAACAAGCGGACCCGAAAGGATCAAACCCTTGCCTCTAATGCCTCGGGCTCAACTGATGCTGGGTCTAGCCAGGAGGTGCAAGCAAATGGAGGGATCAACTCAACTGTCTTAGCTCCGTTTTTCGGCCGAGTCGTGGGTGCCAACTCGCTTTTGACTCGCCATTCTGAGGCTTCAATTTCCATGCTCGTTGATTGGTTTAGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.39

Weight (kDa)

6.53

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020411)

Species Orthologous Gene IDs
prunus_persica Prupe.8G112400_v2.0.a1
pyrus_communis pycom10g06860
rosa_chinensis RchiOBHm_Chr6g0260801 RchiOBHm_Chr6g0266741
rosa_rugosa Rorug02G0250700
rosa_samantha Rh6AG110200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 63, 137
AcoI YGGCCR 1 cut(s) 160
AfeI AGCGCT 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 158, 169, 202
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 2 cut(s) 63, 137
Ama87I CYCGRG 1 cut(s) 79
Aor51HI AGCGCT 1 cut(s) 238
AoxI GGCC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 107
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 47, 175
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 169, 202
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 158, 169, 202
BseMII CTCAG 1 cut(s) 192
BseX3I CGGCCG 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 158, 169, 202
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 55, 129
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 47, 175
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 63, 137
BspT107I GGYRCC 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 55, 129
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 145, 201
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 2 cut(s) 58, 132
BstMBI GATC 2 cut(s) 55, 129
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 45
CviAII CATG 1 cut(s) 217
CviJI RGCY 5 cut(s) 84, 105, 149, 162, 206
CviKI_1 RGCY 5 cut(s) 84, 105, 149, 162, 206
DdeI CTNAG 2 cut(s) 145, 201
DpnI GATC 2 cut(s) 57, 131
DpnII GATC 2 cut(s) 55, 129
EaeI YGGCCR 1 cut(s) 160
EagI CGGCCG 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 45
Eco47III AGCGCT 1 cut(s) 238
Eco52I CGGCCG 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 20, 22, 218
FatI CATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 86
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 238
GsaI CCCAGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 239
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 2 cut(s) 165, 190
Hpy188I TCNGA 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 8, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 145, 201
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 55, 129
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 81, 92, 119
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 102
MalI GATC 2 cut(s) 57, 131
MboI GATC 2 cut(s) 55, 129
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 1 cut(s) 210
MlyI GAGTC 2 cut(s) 174, 184
MnlI CCTC 5 cut(s) 79, 88, 103, 119, 196
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 2 cut(s) 55, 129
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 47, 175
NmeAIII GCCGAG 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PleI GAGTC 2 cut(s) 173, 184
PpsI GAGTC 2 cut(s) 173, 184
Psp6I CCWGG 1 cut(s) 105
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 47, 175
PspPI GGNCC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 10
Sau3AI GATC 2 cut(s) 55, 129
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 2 cut(s) 174, 184
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 86
SetI ASST 2 cut(s) 114, 151
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 45
Sse9I AATT 1 cut(s) 210
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 142
TasI AATT 1 cut(s) 210
TscAI CASTG 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 45
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.