pycom10g06860

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
8024835 .. 8025104
270 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g06860.1

Sequence Viewer

Length: 270 bp
ATGTCTGTGCAGGTGTACTTGTGGAGTAATGAGATGAAGAAAAGGGATCAGACCCTTTCCTCTAATGGCTCGGCCTCAACTCAGTCTGCTACTGTTGCTGTTGGGTTTGAGCAGGATGTAATGGCAAAAGGAGGGATGAACTCGGCCGTGTTAGCTCCTGTTTTCGGCCGAGTTGCGCGTGTCAACTCGCTCTTGTCACACTGTTCTGTGTTAGCTCACGTTAATCAATATTTAAATAATAATTTAACCATTAACGTCCATATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.62

Weight (kDa)

9.03

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020411)

Species Orthologous Gene IDs
prunus_persica Prupe.8G112400_v2.0.a1
pyrus_communis pycom10g06860
rosa_chinensis RchiOBHm_Chr6g0260801 RchiOBHm_Chr6g0266741
rosa_rugosa Rorug02G0250700
rosa_samantha Rh6AG110200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 178
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 144, 166
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 155, 215
AluI AGCT 2 cut(s) 155, 215
AlwI GGATC 1 cut(s) 54
AoxI GGCC 3 cut(s) 72, 144, 166
AspLEI GCGC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 121, 141
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 95
BseX3I CGGCCG 2 cut(s) 144, 166
BsgI GTGCAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 178
Bsh1285I CGRYCG 2 cut(s) 147, 169
BshFI GGCC 3 cut(s) 74, 146, 168
BsiEI CGRYCG 2 cut(s) 147, 169
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 3 cut(s) 74, 146, 168
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 3 cut(s) 74, 146, 168
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 178
BspPI GGATC 1 cut(s) 54
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 94, 203
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 121, 141
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 2 cut(s) 147, 169
BstMWI GCNNNNNNNGC 2 cut(s) 95, 152
BstUI CGCG 1 cut(s) 178
BstZI CGGCCG 2 cut(s) 144, 166
BsuRI GGCC 3 cut(s) 74, 146, 168
BtsCI GGATG 2 cut(s) 121, 141
BtsIMutI CAGTG 1 cut(s) 199
CfoI GCGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 16
CviJI RGCY 6 cut(s) 69, 74, 146, 155, 168, 215
CviKI_1 RGCY 6 cut(s) 69, 74, 146, 155, 168, 215
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 234
EaeI YGGCCR 2 cut(s) 144, 166
EagI CGGCCG 2 cut(s) 144, 166
EclXI CGGCCG 2 cut(s) 144, 166
Eco52I CGGCCG 2 cut(s) 144, 166
FaiI YATR 1 cut(s) 261
FokI GGATG 2 cut(s) 128, 148
GlaI GCGC 1 cut(s) 177
HaeIII GGCC 3 cut(s) 74, 146, 168
HhaI GCGC 1 cut(s) 178
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 16, 184
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 2 cut(s) 16, 184
HpyCH4III ACNGT 2 cut(s) 94, 203
HpyCH4IV ACGT 2 cut(s) 219, 255
HpyCH4V TGCA 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 152
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 2 cut(s) 219, 255
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 98, 171
MaeII ACGT 2 cut(s) 219, 255
MaeIII GTNAC 1 cut(s) 195
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 49
MluCI AATT 1 cut(s) 241
MnlI CCTC 3 cut(s) 70, 85, 125
MseI TTAA 4 cut(s) 222, 233, 245, 252
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 95, 152
NdeII GATC 1 cut(s) 46
NmeAIII GCCGAG 3 cut(s) 50, 122, 194
NmuCI GTSAC 1 cut(s) 195
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 4 cut(s) 222, 233, 245, 252
Sau3AI GATC 1 cut(s) 46
SetI ASST 5 cut(s) 15, 157, 217, 222, 258
SmiI ATTTAAAT 1 cut(s) 234
Sse9I AATT 1 cut(s) 241
SspI AATATT 1 cut(s) 230
SwaI ATTTAAAT 1 cut(s) 234
TaaI ACNGT 2 cut(s) 94, 203
TaiI ACGT 2 cut(s) 222, 258
TasI AATT 1 cut(s) 241
TatI WGTACW 1 cut(s) 15
Tru1I TTAA 4 cut(s) 222, 233, 245, 252
Tru9I TTAA 4 cut(s) 222, 233, 245, 252
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 2 cut(s) 50, 152
TspRI CASTG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.