Rh6AG110200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
16042052 .. 16042297
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG110200.1

Sequence Viewer

Length: 246 bp
ATGTCTGTGCTGGTGGATATATGGAGTAAAGAGACCAAGGAGCAGAGCCAGAAGGATCAAACCCTTTCGTGGAATGCCTCGGCCTCATCAAGCACTGATGTTGGGGTTGACCAAGAGAAAGGAGGGATGAGCTCGTCAACCTTGTTAGCTCCTGTTTTCGGCCGAGTTGTGCGTGTCAACTCACTTTTGACACACTGTTCGTTTGAAGCCTCTGTTTCCATGCTTGTGGAGTGGTTTAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.83

Weight (kDa)

4.83

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020411)

Species Orthologous Gene IDs
prunus_persica Prupe.8G112400_v2.0.a1
pyrus_communis pycom10g06860
rosa_chinensis RchiOBHm_Chr6g0260801 RchiOBHm_Chr6g0266741
rosa_rugosa Rorug02G0250700
rosa_samantha Rh6AG110200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 69, 158
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 2 cut(s) 132, 149
AluI AGCT 2 cut(s) 132, 149
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 63
AoxI GGCC 2 cut(s) 81, 160
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 36, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 158
BseDI CCNNGG 2 cut(s) 36, 78
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 69, 158
BseX3I CGGCCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 83, 162
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 69, 158
BsmAI GTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 2 cut(s) 83, 162
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 2 cut(s) 83, 162
BspPI GGATC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 36, 78
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 197
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 2 cut(s) 83, 162
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 93, 193
CviAII CATG 1 cut(s) 220
CviJI RGCY 7 cut(s) 48, 83, 132, 149, 162, 209, 240
CviKI_1 RGCY 7 cut(s) 48, 83, 132, 149, 162, 209, 240
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 160
EagI CGGCCG 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 26
Eco52I CGGCCG 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 20, 22, 221
FatI CATG 1 cut(s) 219
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 134
HaeIII GGCC 2 cut(s) 83, 162
Hin1II CATG 1 cut(s) 223
HincII GTYRAC 3 cut(s) 109, 138, 178
HindII GTYRAC 3 cut(s) 109, 138, 178
Hpy166II GTNNAC 3 cut(s) 109, 138, 178
Hpy8I GTNNAC 3 cut(s) 109, 138, 178
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 40, 154
LpnPI CCDG 2 cut(s) 62, 165
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 134
MnlI CCTC 4 cut(s) 88, 94, 116, 220
MslI CAYNNNNRTG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 79
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 223
NmeAIII GCCGAG 2 cut(s) 59, 188
PctI GAATGC 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 134, 143, 151
SmiMI CAYNNNNRTG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 134
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 197
TscAI CASTG 2 cut(s) 100, 200
TspRI CASTG 2 cut(s) 100, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.