Rorug02G0250700

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
26137540 .. 26138004
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0250700.1

Sequence Viewer

Length: 243 bp
ATGGCTTCAAAGTATTCAATTCTAATACAGGGAGACTCTGCTATGAACGAGGCAACTATTGGCGCTTTCGCTATTGTTGAAATGCTATTTAGCTCTAGTCTTCTTGCCATTGTTGGAGCTGGTGAAGAGCCATCTTTATCTCCGCGTCGTCTCTGTTTGTTCAATACAACAATTGGAACTGCTCTTCGAGAATTGAACTTTTTGACTTCAATACTTTCCGTTCGTATGAATAGGAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.7

Weight (kDa)

9.18

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020411)

Species Orthologous Gene IDs
prunus_persica Prupe.8G112400_v2.0.a1
pyrus_communis pycom10g06860
rosa_chinensis RchiOBHm_Chr6g0260801 RchiOBHm_Chr6g0266741
rosa_rugosa Rorug02G0250700
rosa_samantha Rh6AG110200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 145
AciI CCGC 1 cut(s) 143
AgsI TTSAA 6 cut(s) 9, 18, 80, 163, 196, 210
AluBI AGCT 2 cut(s) 93, 119
AluI AGCT 2 cut(s) 93, 119
Alw26I GTCTC 2 cut(s) 27, 155
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 92
BccI CCATC 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 27, 155
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 145
BsmAI GTCTC 2 cut(s) 27, 155
BsmBI CGTCTC 1 cut(s) 155
BspACI CCGC 1 cut(s) 143
BspFNI CGCG 1 cut(s) 145
BspQI GCTCTTC 2 cut(s) 120, 189
Bst6I CTCTTC 2 cut(s) 120, 189
BstFNI CGCG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstMAI GTCTC 2 cut(s) 27, 155
BstUI CGCG 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 92
CfoI GCGC 1 cut(s) 65
CseI GACGC 1 cut(s) 134
CviJI RGCY 4 cut(s) 5, 93, 119, 130
CviKI_1 RGCY 4 cut(s) 5, 93, 119, 130
Eam1104I CTCTTC 2 cut(s) 120, 189
EarI CTCTTC 2 cut(s) 120, 189
Esp3I CGTCTC 1 cut(s) 155
FaiI YATR 2 cut(s) 44, 227
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 66
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 150
HspAI GCGC 1 cut(s) 63
LguI GCTCTTC 2 cut(s) 120, 189
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 2 cut(s) 14, 105
MaeI CTAG 1 cut(s) 96
MboII GAAGA 3 cut(s) 92, 137, 176
MfeI CAATTG 1 cut(s) 171
MluCI AATT 3 cut(s) 18, 171, 191
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 43
MunI CAATTG 1 cut(s) 171
MvnI CGCG 1 cut(s) 145
PciSI GCTCTTC 2 cut(s) 120, 189
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
SapI GCTCTTC 2 cut(s) 120, 189
SchI GAGTC 1 cut(s) 29
SetI ASST 3 cut(s) 95, 121, 242
SgeI CNNG 7 cut(s) 41, 61, 108, 116, 132, 156, 200
Sse9I AATT 3 cut(s) 18, 171, 191
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 96
TaqI TCGA 1 cut(s) 187
TasI AATT 3 cut(s) 18, 171, 191
TspDTI ATGAA 2 cut(s) 59, 242
TspGWI ACGGA 1 cut(s) 208
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.