RchiOBHm_Chr6g0260801

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
15738912 .. 15739581
670 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23389

Sequence Viewer

Length: 246 bp
ATGTCTGCGCTGGTGGATATATGGAGTAATGAGACCAAGGAGCAGAGCCAGAAGGATCAAACCCTTTCGTCAAATGCATCGGCCTCATCAAGCACTGATGTTGGGGTTAACCAAGTGAAAGGAGGGATGAGCTCGTCAACCTTGTTAGCTCCTGTTTTCGGCCGAGTCGTGCGTGTCAACTCACTTTTGACACGCTATTCGTCTGAAGCCTCAGTTTCCATGCTTGTGGAGTGGTTTAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.67

Weight (kDa)

5.1

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020411)

Species Orthologous Gene IDs
prunus_persica Prupe.8G112400_v2.0.a1
pyrus_communis pycom10g06860
rosa_chinensis RchiOBHm_Chr6g0260801 RchiOBHm_Chr6g0266741
rosa_rugosa Rorug02G0250700
rosa_samantha Rh6AG110200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 158
AluBI AGCT 2 cut(s) 132, 149
AluI AGCT 2 cut(s) 132, 149
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 63
AoxI GGCC 2 cut(s) 81, 160
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspLEI GCGC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 26
BmsI GCATC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 225
BseX3I CGGCCG 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 83, 162
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 2 cut(s) 83, 162
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 2 cut(s) 83, 162
BspCNI CTCAG 1 cut(s) 224
BspPI GGATC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 2 cut(s) 83, 162
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 10
CviAII CATG 1 cut(s) 220
CviJI RGCY 7 cut(s) 48, 83, 132, 149, 162, 209, 240
CviKI_1 RGCY 7 cut(s) 48, 83, 132, 149, 162, 209, 240
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 160
EagI CGGCCG 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 132
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 26
Eco52I CGGCCG 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 20, 22, 221
FatI CATG 1 cut(s) 219
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 134
GlaI GCGC 1 cut(s) 9
HaeIII GGCC 2 cut(s) 83, 162
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 3 cut(s) 109, 138, 178
HindII GTYRAC 3 cut(s) 109, 138, 178
HinfI GANTC 1 cut(s) 165
HpaI GTTAAC 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 109, 138, 178
Hpy188I TCNGA 1 cut(s) 205
Hpy8I GTNNAC 3 cut(s) 109, 138, 178
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 211
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 40, 154
LpnPI CCDG 2 cut(s) 62, 165
LweI GCATC 1 cut(s) 86
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 3 cut(s) 94, 116, 220
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 224
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 223
NmeAIII GCCGAG 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 174
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 134, 143, 151
SfaNI GCATC 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 134
StyI CCWWGG 1 cut(s) 36
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 100
TspRI CASTG 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.