Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008839

Physical Location & Seq

Genomic Coordinates Reverse (-)

19996242 .. 19998947

Gene Structure 2706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G219800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATTATTTCAAGGCTTAACAGAAGTCCATCTATTCTTTACACTGTGAGTTGCAGACATGAAGGTTGGAATAGTATTGCGAAGTACTTAATAGAAGATGTTCCTCTCCTGTTGAAGTCAGAAGATGTAAAAGACGTCCAGAATGTGATCTCAGTTGTATTCAAATCACCACCTGCTGACTTGAGAGAGTTCATTAAATGGGTTGCCGAAGTTCGGAGACAAGAGGATGGGAATCCGATCGTAAACAAAGAGGAAAAAGGAAGGCTAGCTATCAAGGAAGAGGTATTGAAACAAGTAAAAGAAATGGAACTCTTCAAGCATGTAACCAAATGGTTGGCTGCTAAAAATTCACTTTGTAAGGATACCGTATCACTGGGTGGTAAAGATACCTTGCCTGAAATTGCAGCAAATGTGTGTTGCCAAGGAGCTAAAGTTTTGGCTGGGAAAGTCAGTTCATTAGATGGAATGTGTTGTAGAAAAACTGACATGAAAGTCTTAAAATCCAATGGTGAAAAGCCCGTAACAGTGGTCTCAGGAACTGTAACAACTAATGGCATGGAACAAGCAGTTGATATGCTGGTTCCCTCATGTCAAACAGATCCAAGCAGTCTGTGTTCTTTTTATCATGGCAGCTGCGTAGGGATGCATCCATCTACGGGCGATATTCTAACAGTACTTCTGTTGGCTCTGCCTCAACACACATGGTCTGGCATTAAAGAAGAGAAGCTACTTGCAGAAATTAATAGTCTCATATCAACTGATTGTCTGCCCACTTTGCTTCAAGGGGAGGTTCAGTACTTGCGACGGCAAATCCACTTCCTCATGACTGATAATGTAGCAGGTTCTCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phytochelatin Phytochelatin_C

Protein Analysis

285

Amino Acids

31.3

Weight (kDa)

6.98

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21020 FvH4_2g21020 FvH4_2g21020 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050
malus_domestica	MD05G1193300.v1.1
prunus_persica	Prupe.8G219800_v2.0.a1
pyrus_communis	pycom05g18040
rosa_chinensis	RchiOBHm_Chr6g0287501
rosa_laevigata	RLG00000012489
rosa_multiflora	Rmu_sc0007029.1_g000013
rosa_roxburghii	Rroxscaffold_7G00181420
rosa_rugosa	Rorug06G0188400.1 Rorug06G0188500.1
rosa_samantha	Rh6AG299800 Rh6BG305200 Rh6CG304300 Rh6CG313600 Rh6DG297000
rosa_wichuraiana	Rw6G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	181
AasI	GACNNNNNNGTC	1 cut(s)	491
AatII	GACGTC	1 cut(s)	138
Acc36I	ACCTGC	2 cut(s)	181, 830
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	3 cut(s)	86, 675, 797
AfiI	CCNNNNNNNGG	2 cut(s)	213, 656
AgsI	TTSAA	6 cut(s)	12, 115, 163, 289, 316, 782
AloI	GAACNNNNNNTCC	2 cut(s)	436, 468
AluBI	AGCT	4 cut(s)	269, 428, 633, 727
AluI	AGCT	4 cut(s)	269, 428, 633, 727
Alw26I	GTCTC	3 cut(s)	211, 535, 752
AlwI	GGATC	1 cut(s)	593
AlwNI	CAGNNNCTG	1 cut(s)	539
ApeKI	GCWGC	4 cut(s)	338, 404, 630, 633
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	159, 521
AsuNHI	GCTAGC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	711, 743
BbvI	GCAGC	4 cut(s)	325, 416, 620, 642
BccI	CCATC	4 cut(s)	37, 221, 455, 658
BceAI	ACGGC	1 cut(s)	821
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	211, 535, 752
BfaI	CTAG	1 cut(s)	266
BfuAI	ACCTGC	2 cut(s)	181, 830
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	4 cut(s)	339, 405, 631, 634
BlsI	GCNGC	4 cut(s)	340, 406, 632, 635
BmcAI	AGTACT	3 cut(s)	86, 675, 797
BmiI	GGNNCC	1 cut(s)	582
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	633, 655
BmtI	GCTAGC	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	421
BsaXI	ACNNNNNCTCC	4 cut(s)	417, 447, 779, 809
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 656
Bse1I	ACTGG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	3 cut(s)	232, 646, 648
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	213, 656
BseMII	CTCAG	2 cut(s)	165, 546
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	4 cut(s)	325, 416, 620, 642
BseYI	CCCAGC	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	213, 656
BsmAI	GTCTC	3 cut(s)	211, 535, 752
Bso31I	GGTCTC	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	147, 237, 598
BspCNI	CTCAG	2 cut(s)	164, 545
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	2 cut(s)	181, 830
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	147, 237, 598
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	421
Bst4CI	ACNGT	5 cut(s)	46, 367, 526, 541, 673
Bst6I	CTCTTC	3 cut(s)	273, 317, 714
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	151, 532
BstF5I	GGATG	3 cut(s)	232, 646, 648
BstKTI	GATC	3 cut(s)	150, 240, 601
BstMAI	GTCTC	3 cut(s)	211, 535, 752
BstMBI	GATC	3 cut(s)	147, 237, 598
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	775
BstNSI	RCATGY	1 cut(s)	323
BstV1I	GCAGC	4 cut(s)	325, 416, 620, 642
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	598
BsuI	GTATCC	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	232, 646, 648
BtsIMutI	CAGTG	3 cut(s)	42, 371, 531
BveI	ACCTGC	2 cut(s)	181, 830
Cac8I	GCNNGC	1 cut(s)	267
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	822
Csp6I	GTAC	3 cut(s)	85, 674, 796
CviAII	CATG	8 cut(s)	59, 320, 487, 556, 588, 626, 702, 823
CviQI	GTAC	3 cut(s)	85, 674, 796
DdeI	CTNAG	2 cut(s)	151, 532
DpnI	GATC	3 cut(s)	149, 239, 600
DpnII	GATC	3 cut(s)	147, 237, 598
DraIII	CACNNNGTG	1 cut(s)	377
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eam1104I	CTCTTC	3 cut(s)	273, 317, 714
EarI	CTCTTC	3 cut(s)	273, 317, 714
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	8 cut(s)	62, 323, 490, 559, 591, 629, 705, 826
FatI	CATG	8 cut(s)	58, 319, 486, 555, 587, 625, 701, 822
Fnu4HI	GCNGC	4 cut(s)	339, 405, 631, 634
FokI	GGATG	3 cut(s)	239, 633, 655
Fsp4HI	GCNGC	4 cut(s)	339, 405, 631, 634
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	4 cut(s)	339, 405, 631, 634
GsaI	CCCAGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	8 cut(s)	62, 323, 490, 559, 591, 629, 705, 826
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	2 cut(s)	159, 521
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	121, 216, 237
Hpy188III	TCNNGA	3 cut(s)	139, 534, 823
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	807
HpyAV	CCTTC	2 cut(s)	56, 255
HpyCH4III	ACNGT	5 cut(s)	46, 367, 526, 541, 673
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	4 cut(s)	54, 404, 646, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	775
HpyF3I	CTNAG	2 cut(s)	151, 532
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	8 cut(s)	62, 323, 490, 559, 591, 629, 705, 826
Kzo9I	GATC	3 cut(s)	147, 237, 598
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	4 cut(s)	325, 416, 620, 642
LweI	GCATC	2 cut(s)	633, 655
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	322, 520, 541
MalI	GATC	3 cut(s)	149, 239, 600
MboI	GATC	3 cut(s)	147, 237, 598
MboII	GAAGA	5 cut(s)	107, 134, 290, 304, 731
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	3 cut(s)	346, 399, 738
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	8 cut(s)	114, 217, 244, 274, 595, 702, 781, 830
Mph1103I	ATGCAT	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	6 cut(s)	18, 89, 195, 497, 714, 741
MspA1I	CMGCKG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	775
NdeII	GATC	3 cut(s)	147, 237, 598
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	8 cut(s)	62, 323, 490, 559, 591, 629, 705, 826
NlaIV	GGNNCC	1 cut(s)	582
NsiI	ATGCAT	1 cut(s)	648
NspI	RCATGY	1 cut(s)	323
PagI	TCATGA	1 cut(s)	822
PaqCI	CACCTGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	340, 406, 632, 635
Ple19I	CGATCG	1 cut(s)	240
PshBI	ATTAAT	1 cut(s)	741
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	582
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	598
PvuI	CGATCG	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	3 cut(s)	86, 675, 797
RsaNI	GTAC	3 cut(s)	85, 674, 796
SaqAI	TTAA	6 cut(s)	18, 89, 195, 497, 714, 741
SatI	GCNGC	4 cut(s)	339, 405, 631, 634
Sau3AI	GATC	3 cut(s)	147, 237, 598
ScaI	AGTACT	3 cut(s)	86, 675, 797
SfaNI	GCATC	2 cut(s)	633, 655
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	346, 399, 738
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	5 cut(s)	46, 367, 526, 541, 673
TaiI	ACGT	1 cut(s)	138
TasI	AATT	3 cut(s)	346, 399, 738
TatI	WGTACW	3 cut(s)	84, 673, 795
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	6 cut(s)	18, 89, 195, 497, 714, 741
Tru9I	TTAA	6 cut(s)	18, 89, 195, 497, 714, 741
TscAI	CASTG	3 cut(s)	49, 378, 531
TseI	GCWGC	4 cut(s)	338, 404, 630, 633
TspDTI	ATGAA	5 cut(s)	75, 181, 444, 503, 840
TspRI	CASTG	3 cut(s)	49, 378, 531
VspI	ATTAAT	1 cut(s)	741
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	1 cut(s)	266
ZraI	GACGTC	1 cut(s)	136
ZrmI	AGTACT	3 cut(s)	86, 675, 797
Zsp2I	ATGCAT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.