Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008839

Physical Location & Seq

Genomic Coordinates Reverse (-)

21094108 .. 21097392

Gene Structure 3285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18040.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGCGGTGGTCGGCCTCTACCGCCGGGAGCTTCCCTCTCCTCCTGCAATCGAATTTGCTTCCCCAGACGGAAAGAAGTTATTTACTGAAGCTCTTGGAAATGGAACCATGGAGGGGTTTTTCAAGTTGATCTCTTACTACCAAACGCAGTCGGAGCCTGCTTATTGCGGGCTGTCCACCCTCGCCGTCGTCCTCAACGCCCTCGCCATTGATCCCGGAAGAAAATGGAAAGGCCCATGGAGATGGTTTGATGACTCAATGCTGGATTGCTGTGAGCCTTTGGCAAAGGTCAAAGCCGAAGGCATCACATTCGGGAAAGTTGCATGCTTGGCGCATTGCAACGGCGCTGAGGTCAAGGCATTACGAACCTATGAAAGTTCGGTGGATGAATTTCGTAACCATGTCATTTCGTGTACTTCTTCAGAGGATTGTCATGTCATCACATCTTACCACAGAGCTGCATTTAGCCAGACTGGAAGTGGTCATTTTTCACCGATTGGTGGCTATCACGCTGGAACAGATATGGTACTCATTTTGGATGTTGCTCGATTCAAATATCCTCCTCATTGGGTTCCCCTTTCGCTTCTTTGGGAGGGAATGAATACTATTGATGAAGCAACTGGACATCATCGGGGGTACATGATCATTTCAAGGCTTAACAGAAGCCCGTCTATTCTCTACACTGTGAGTTGCAGACATGAAGGTTGGAGTAGTATTGCGAAGTACTTAACAGAAGATGTTCCTCTCATGTTGAAGTCGGAAGATATAAAAGATGTTCAGAATGTAATCTCTGTTGTCTTCAAATCACCACCTGCTGACTTGAGAGAGTTCATTAAATGGGTTGCCGAAGTTCGGAGACAAGAGGATGGGACTCTGAGCTTAGACAAAGAGGAAAAAGGAAGGCTCGCTATCAAGGAAGAGGTATTAAAACAAGTAAGAGAAACGGAACTCTTCAGACATGTAAGCGAATGGTTGGCTTCTAAATCAATCTGTAAAGACATATCACAAGGTGGTAAAGATACATTGCCTGAAATTGCTGCCAATGTTTGTTGTCAAGGAGGACAAGTATTTTCCGGGAGTGTCAGTTCATTTGATCGAGCGTGCTGTAGGCAAACTGACATGAAACTCTTGAAATGCAATGGTGAAAAGCCCGTTACCGTGGTGTCGGGGACTGTAACAACAAATGGCGGTGAACAAGCAGTTGAGATGCTGGTTCCCTCATGTCAAACCAAACCAAGCAGCTTGTGTTCTTATTTTCAAGGTAGCTGCATAGGGATGCATCCATCTACGGGTGATGTTCTAACAGTACTTCTATTGGCTCTGCCTCAACAAACATGGTCTGGCCTTAGAGAAGAGAAGCTACTGGCAGAAATCAATTGCCTCATATCAACCGATTGTCTACCAACTTTGCTTCAAGAGGAGGTTTTCTACTTGCGACGGCAAATTCGCTTCCTCATGACTGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phytochelatin Phytochelatin_C

Protein Analysis

490

Amino Acids

54.32

Weight (kDa)

6.1

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21020 FvH4_2g21020 FvH4_2g21020 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050
malus_domestica	MD05G1193300.v1.1
prunus_persica	Prupe.8G219800_v2.0.a1
pyrus_communis	pycom05g18040
rosa_chinensis	RchiOBHm_Chr6g0287501
rosa_laevigata	RLG00000012489
rosa_multiflora	Rmu_sc0007029.1_g000013
rosa_roxburghii	Rroxscaffold_7G00181420
rosa_rugosa	Rorug06G0188400.1 Rorug06G0188500.1
rosa_samantha	Rh6AG299800 Rh6BG305200 Rh6CG304300 Rh6CG313600 Rh6DG297000
rosa_wichuraiana	Rw6G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	820
Acc36I	ACCTGC	1 cut(s)	820
AccI	GTMKAC	1 cut(s)	1399
AciI	CCGC	4 cut(s)	5, 22, 168, 1188
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	3 cut(s)	53, 389, 1443
AcuI	CTGAAG	3 cut(s)	108, 405, 937
AdeI	CACNNNGTG	1 cut(s)	1010
AfaI	GTAC	5 cut(s)	415, 528, 638, 725, 1308
AfiI	CCNNNNNNNGG	4 cut(s)	114, 500, 852, 1289
AflIII	ACRYGT	1 cut(s)	958
AgsI	TTSAA	8 cut(s)	124, 553, 651, 754, 802, 1132, 1259, 1415
AloI	GAACNNNNNNTCC	2 cut(s)	1069, 1101
AluBI	AGCT	7 cut(s)	31, 92, 458, 879, 1242, 1266, 1360
AluI	AGCT	7 cut(s)	31, 92, 458, 879, 1242, 1266, 1360
Alw26I	GTCTC	1 cut(s)	850
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	3 cut(s)	13, 232, 1342
ApeKI	GCWGC	4 cut(s)	458, 1037, 1239, 1266
ApoI	RAATTY	3 cut(s)	53, 389, 1443
ArsI	GACNNNNNNTTYG	2 cut(s)	1428, 1460
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	2 cut(s)	334, 347
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	3 cut(s)	26, 216, 1075
AsuHPI	GGTGA	5 cut(s)	483, 798, 1154, 1202, 1304
BarI	GAAGNNNNNNTAC	2 cut(s)	1344, 1376
BbsI	GAAGAC	1 cut(s)	790
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	445, 1024, 1251, 1253
BccI	CCATC	3 cut(s)	237, 860, 1291
BceAI	ACGGC	3 cut(s)	170, 358, 1454
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	3 cut(s)	26, 216, 1075
BcoDI	GTCTC	1 cut(s)	850
BfmI	CTRYAG	1 cut(s)	1105
BfoI	RGCGCY	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	820
BisI	GCNGC	4 cut(s)	459, 1038, 1240, 1267
BlsI	GCNGC	4 cut(s)	460, 1039, 1241, 1268
BmcAI	AGTACT	2 cut(s)	725, 1308
Bme1390I	CCNGG	3 cut(s)	26, 216, 1075
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	4 cut(s)	106, 156, 573, 1215
BmrFI	CCNGG	3 cut(s)	26, 216, 1075
BmsI	GCATC	4 cut(s)	312, 1197, 1266, 1288
BpiI	GAAGAC	1 cut(s)	790
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	3 cut(s)	26, 216, 1075
BsaJI	CCNNGG	3 cut(s)	108, 236, 1158
BsaXI	ACNNNNNCTCC	4 cut(s)	1050, 1069, 1080, 1099
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 500, 852, 1289
Bse1I	ACTGG	3 cut(s)	478, 625, 1368
Bse3DI	GCAATG	3 cut(s)	334, 1022, 1144
BseDI	CCNNGG	3 cut(s)	108, 236, 1158
BseGI	GGATG	5 cut(s)	391, 544, 871, 1279, 1281
BseLI	CCNNNNNNNGG	4 cut(s)	114, 500, 852, 1289
BseMI	GCAATG	3 cut(s)	334, 1022, 1144
BseMII	CTCAG	2 cut(s)	339, 866
BseNI	ACTGG	3 cut(s)	478, 625, 1368
BseRI	GAGGAG	3 cut(s)	30, 552, 1433
BseXI	GCAGC	4 cut(s)	445, 1024, 1251, 1253
BshFI	GGCC	3 cut(s)	15, 234, 1344
BsiSI	CCGG	3 cut(s)	25, 216, 1074
BslFI	GGGAC	2 cut(s)	883, 1183
BslI	CCNNNNNNNGG	4 cut(s)	114, 500, 852, 1289
BsmAI	GTCTC	1 cut(s)	850
BsmFI	GGGAC	2 cut(s)	883, 1183
BsnI	GGCC	3 cut(s)	15, 234, 1344
Bsp143I	GATC	4 cut(s)	129, 211, 642, 1093
Bsp19I	CCATGG	2 cut(s)	108, 236
BspACI	CCGC	4 cut(s)	5, 22, 168, 1188
BspANI	GGCC	3 cut(s)	15, 234, 1344
BspCNI	CTCAG	2 cut(s)	340, 867
BspHI	TCATGA	1 cut(s)	1455
BspLI	GGNNCC	4 cut(s)	106, 156, 573, 1215
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	1 cut(s)	206
BsrDI	GCAATG	3 cut(s)	334, 1022, 1144
BsrI	ACTGG	3 cut(s)	478, 625, 1368
BssECI	CCNNGG	3 cut(s)	108, 236, 1158
BssMI	GATC	4 cut(s)	129, 211, 642, 1093
BssT1I	CCWWGG	2 cut(s)	108, 236
Bst4CI	ACNGT	4 cut(s)	685, 1159, 1174, 1306
Bst6I	CTCTTC	3 cut(s)	912, 956, 1347
BstC8I	GCNNGC	5 cut(s)	159, 170, 325, 906, 1102
BstDEI	CTNAG	4 cut(s)	348, 875, 880, 1346
BstDSI	CCRYGG	3 cut(s)	108, 236, 1158
BstF5I	GGATG	5 cut(s)	391, 544, 871, 1279, 1281
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	334, 347
BstKTI	GATC	4 cut(s)	132, 214, 645, 1096
BstMAI	GTCTC	1 cut(s)	850
BstMBI	GATC	4 cut(s)	129, 211, 642, 1093
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 154, 329
BstNSI	RCATGY	2 cut(s)	327, 962
BstSCI	CCNGG	3 cut(s)	24, 214, 1073
BstSFI	CTRYAG	1 cut(s)	1105
BstV1I	GCAGC	4 cut(s)	445, 1024, 1251, 1253
BstV2I	GAAGAC	1 cut(s)	790
BstXI	CCANNNNNNTGG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	15, 234, 1344
BtgI	CCRYGG	3 cut(s)	108, 236, 1158
BtsCI	GGATG	5 cut(s)	391, 544, 871, 1279, 1281
BtsIMutI	CAGTG	1 cut(s)	681
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	5 cut(s)	159, 170, 325, 906, 1102
CciI	TCATGA	1 cut(s)	1455
CfoI	GCGC	2 cut(s)	334, 347
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	5 cut(s)	414, 527, 637, 724, 1307
CviQI	GTAC	5 cut(s)	414, 527, 637, 724, 1307
DdeI	CTNAG	4 cut(s)	348, 875, 880, 1346
DpnI	GATC	4 cut(s)	131, 213, 644, 1095
DpnII	GATC	4 cut(s)	129, 211, 642, 1093
DraIII	CACNNNGTG	1 cut(s)	1010
Eam1104I	CTCTTC	3 cut(s)	912, 956, 1347
EarI	CTCTTC	3 cut(s)	912, 956, 1347
Eco130I	CCWWGG	2 cut(s)	108, 236
Eco57I	CTGAAG	3 cut(s)	108, 405, 937
EcoT14I	CCWWGG	2 cut(s)	108, 236
EcoT22I	ATGCAT	1 cut(s)	1281
ErhI	CCWWGG	2 cut(s)	108, 236
FaqI	GGGAC	2 cut(s)	883, 1183
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	1399
Fnu4HI	GCNGC	4 cut(s)	459, 1038, 1240, 1267
FokI	GGATG	5 cut(s)	398, 551, 878, 1266, 1288
Fsp4HI	GCNGC	4 cut(s)	459, 1038, 1240, 1267
GlaI	GCGC	2 cut(s)	333, 346
GluI	GCNGC	4 cut(s)	459, 1038, 1240, 1267
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	15, 234, 1344
HapII	CCGG	3 cut(s)	25, 216, 1074
HhaI	GCGC	2 cut(s)	334, 347
Hin6I	GCGC	2 cut(s)	332, 345
HinP1I	GCGC	2 cut(s)	332, 345
HinfI	GANTC	3 cut(s)	254, 549, 871
HpaII	CCGG	3 cut(s)	25, 216, 1074
HphI	GGTGA	5 cut(s)	483, 798, 1154, 1202, 1304
Hpy166II	GTNNAC	4 cut(s)	177, 414, 1193, 1400
Hpy188I	TCNGA	7 cut(s)	154, 424, 760, 780, 855, 876, 956
Hpy188III	TCNNGA	4 cut(s)	313, 1129, 1415, 1456
Hpy8I	GTNNAC	4 cut(s)	177, 414, 1193, 1400
Hpy99I	CGWCG	2 cut(s)	191, 1440
HpyAV	CCTTC	3 cut(s)	293, 695, 894
HpyCH4III	ACNGT	4 cut(s)	685, 1159, 1174, 1306
HpyCH4V	TGCA	8 cut(s)	47, 323, 339, 461, 693, 1137, 1269, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 154, 329
HpyF3I	CTNAG	4 cut(s)	348, 875, 880, 1346
HspAI	GCGC	2 cut(s)	332, 345
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	4 cut(s)	129, 211, 642, 1093
LmnI	GCTCC	2 cut(s)	28, 154
Lsp1109I	GCAGC	4 cut(s)	445, 1024, 1251, 1253
LweI	GCATC	4 cut(s)	312, 1197, 1266, 1288
MaeIII	GTNAC	3 cut(s)	395, 1153, 1174
MalI	GATC	4 cut(s)	131, 213, 644, 1095
MboI	GATC	4 cut(s)	129, 211, 642, 1093
MboII	GAAGA	8 cut(s)	231, 411, 746, 773, 790, 929, 943, 1364
MfeI	CAATTG	1 cut(s)	1375
MluCI	AATT	5 cut(s)	53, 389, 1032, 1375, 1443
MlyI	GAGTC	2 cut(s)	248, 865
MmeI	TCCRAC	3 cut(s)	132, 686, 738
Mph1103I	ATGCAT	1 cut(s)	1281
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	4 cut(s)	657, 728, 834, 926
MslI	CAYNNNNRTG	2 cut(s)	241, 1274
MspI	CCGG	3 cut(s)	25, 216, 1074
MspR9I	CCNGG	3 cut(s)	26, 216, 1075
MunI	CAATTG	1 cut(s)	1375
MwoI	GCNNNNNNNGC	3 cut(s)	21, 154, 329
NciI	CCSGG	3 cut(s)	26, 216, 1075
NcoI	CCATGG	2 cut(s)	108, 236
NdeII	GATC	4 cut(s)	129, 211, 642, 1093
NlaIV	GGNNCC	4 cut(s)	106, 156, 573, 1215
NsiI	ATGCAT	1 cut(s)	1281
NspI	RCATGY	2 cut(s)	327, 962
PaeI	GCATGC	1 cut(s)	327
PagI	TCATGA	1 cut(s)	1455
PaqCI	CACCTGC	1 cut(s)	820
PciI	ACATGT	1 cut(s)	958
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	549
PfoI	TCCNGGA	2 cut(s)	214, 1073
PkrI	GCNGC	4 cut(s)	460, 1039, 1241, 1268
PleI	GAGTC	2 cut(s)	248, 865
PpsI	GAGTC	2 cut(s)	248, 865
PscI	ACATGT	1 cut(s)	958
PspN4I	GGNNCC	4 cut(s)	106, 156, 573, 1215
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	5 cut(s)	415, 528, 638, 725, 1308
RsaNI	GTAC	5 cut(s)	414, 527, 637, 724, 1307
RseI	CAYNNNNRTG	2 cut(s)	241, 1274
SaqAI	TTAA	4 cut(s)	657, 728, 834, 926
SatI	GCNGC	4 cut(s)	459, 1038, 1240, 1267
Sau3AI	GATC	4 cut(s)	129, 211, 642, 1093
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	2 cut(s)	725, 1308
SchI	GAGTC	2 cut(s)	248, 865
ScrFI	CCNGG	3 cut(s)	26, 216, 1075
SfaNI	GCATC	4 cut(s)	312, 1197, 1266, 1288
SfcI	CTRYAG	1 cut(s)	1105
SmiMI	CAYNNNNRTG	2 cut(s)	241, 1274
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	5 cut(s)	53, 389, 1032, 1375, 1443
SsiI	CCGC	4 cut(s)	5, 22, 168, 1188
StyD4I	CCNGG	3 cut(s)	24, 214, 1073
StyI	CCWWGG	2 cut(s)	108, 236
TaaI	ACNGT	4 cut(s)	685, 1159, 1174, 1306
TaqI	TCGA	3 cut(s)	51, 547, 1096
TasI	AATT	5 cut(s)	53, 389, 1032, 1375, 1443
TatI	WGTACW	3 cut(s)	413, 723, 1306
TfiI	GAWTC	1 cut(s)	549
Tru1I	TTAA	4 cut(s)	657, 728, 834, 926
Tru9I	TTAA	4 cut(s)	657, 728, 834, 926
TscAI	CASTG	1 cut(s)	688
TseI	GCWGC	4 cut(s)	458, 1037, 1239, 1266
TspDTI	ATGAA	8 cut(s)	387, 402, 614, 627, 714, 820, 1077, 1136
TspGWI	ACGGA	2 cut(s)	84, 959
TspRI	CASTG	1 cut(s)	688
XapI	RAATTY	3 cut(s)	53, 389, 1443
XceI	RCATGY	2 cut(s)	327, 962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	1399
XmnI	GAANNNNTTC	1 cut(s)	738
ZrmI	AGTACT	2 cut(s)	725, 1308
Zsp2I	ATGCAT	1 cut(s)	1281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.