Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008839

Physical Location & Seq

Genomic Coordinates Forward (+)

48451245 .. 48457202

Gene Structure 5958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG304300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTTACTGTTATTACAGACTGGAACTGGTCATTTTTCACCAATTGGGGGCTACCATGCTGCAAAAGATATGGTTCTCATTTTGGATGTTGCGAGATTTAAATATCCTCCCCATTGGGTTCCTCTTTCACTTCTTTGGGAGGCGATGGATACTGTTGATGAAGCAACTGGACATCGTCGCGGGTACATGATTATTTCAAGGCTTAACAGAACACCTTCTATCCTATACACTGTGAGTTGCAGACATGAAGGCTGGAACAGTGTTGCAAAGTACTTAATAGAAGATGTTCCTCTACTTATGAAGTTGGAAGGAATAAAAGATGTTCAGGAAGTAATCTCTGTTTTATTCAAATCACCACCTGCCAACTTGAGAGAGTTTGTCAAATGGGTTGCTGAAGTTCGGAGACAAGAGGATGGGCATTTGATCTTAAGCAAAGAAGAGAAAGGAAGGCTAGCCATTAAGGAAGAGGTAATGAAACAAGTAAGAGAGACAGAACTCTACAAACATGTAACTAGATGGTTGGCTTCTGAAAGCTCACTTTGTAAAGAAACCACACCACCAGTTGGTAAAGATATGTTGCCCGAGATTGGTGCAAAGGTCTGCTGCCAAGGAGCAGAAATTTTGCGTGGGAAAGTTGGTTCATCAAATGGAACGTGCTGTACACCAACTGATGTTAAACTCTTGAAGTCCACAGGTGATAATCCTGCAACGGTGGTGTCAGGTATTGTAAAAACTGATGGCACTGAACAAGGAGTTGATGTGCTGGTTCCCTCATGTCAAATGGATCCAACTAGCTTGTGTTCTTTCGATCAAGGTAGCTGCATAGGCATGCATCCATCTACAGGTGATGTTCTCACAGTACTTCTATTGGCGCTGCCTCCACTCACATGGTCAGGCATTAAAGAAGAGAAGCTACTGGCGGAGATTAATGGTCTTGTATCAACTGATTGCCTACCCGCTTTGCTTCAAGGGGAGGTGAATTCTCTCTCTCTTTCTCTATCACTCCATTGTTTAATCAGGTTAGAACCTAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phytochelatin Phytochelatin_C

Protein Analysis

345

Amino Acids

37.88

Weight (kDa)

6.02

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phytochelatin	PF05023	4 - 62	2.2e-29	Phytochelatin synthase
Phytochelatin_C	PF09328	80 - 329	7.7e-111	Domain of unknown function (DUF1984)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21020 FvH4_2g21020 FvH4_2g21020 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050 FvH4_2g21050
malus_domestica	MD05G1193300.v1.1
prunus_persica	Prupe.8G219800_v2.0.a1
pyrus_communis	pycom05g18040
rosa_chinensis	RchiOBHm_Chr6g0287501
rosa_laevigata	RLG00000012489
rosa_multiflora	Rmu_sc0007029.1_g000013
rosa_roxburghii	Rroxscaffold_7G00181420
rosa_rugosa	Rorug06G0188400.1 Rorug06G0188500.1
rosa_samantha	Rh6AG299800 Rh6BG305200 Rh6CG304300 Rh6CG313600 Rh6DG297000
rosa_wichuraiana	Rw6G025860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccII	CGCG	1 cut(s)	180
AciI	CCGC	3 cut(s)	180, 920, 957
AclWI	GGATC	2 cut(s)	779, 792
AcsI	RAATTY	2 cut(s)	618, 979
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	4 cut(s)	185, 272, 661, 861
AfiI	CCNNNNNNNGG	4 cut(s)	47, 563, 587, 842
AflII	CTTAAG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	4 cut(s)	198, 349, 685, 968
AloI	GAACNNNNNNTCC	2 cut(s)	622, 654
AluBI	AGCT	4 cut(s)	534, 795, 819, 913
AluI	AGCT	4 cut(s)	534, 795, 819, 913
Alw26I	GTCTC	2 cut(s)	397, 482
AlwI	GGATC	2 cut(s)	779, 792
Ama87I	CYCGRG	1 cut(s)	581
ApeKI	GCWGC	4 cut(s)	59, 603, 819, 874
ApoI	RAATTY	2 cut(s)	618, 979
AseI	ATTAAT	1 cut(s)	927
Asp700I	GAANNNNTTC	2 cut(s)	214, 285
AspLEI	GCGC	1 cut(s)	874
AsuHPI	GGTGA	5 cut(s)	30, 345, 707, 857, 988
AsuNHI	GCTAGC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	784
BarI	GAAGNNNNNNTAC	2 cut(s)	897, 929
BbvI	GCAGC	4 cut(s)	46, 590, 806, 861
BccI	CCATC	5 cut(s)	139, 407, 510, 731, 844
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciVI	GTATCC	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	397, 482
BfaI	CTAG	3 cut(s)	452, 513, 792
BfmI	CTRYAG	1 cut(s)	840
BfoI	RGCGCY	1 cut(s)	875
BfrI	CTTAAG	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	4 cut(s)	60, 604, 820, 875
BlsI	GCNGC	4 cut(s)	61, 605, 821, 876
BmcAI	AGTACT	2 cut(s)	272, 861
BmeT110I	CYCGRG	1 cut(s)	581
BmiI	GGNNCC	3 cut(s)	120, 768, 786
BmsI	GCATC	1 cut(s)	841
BmtI	GCTAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 563, 587, 842
Bse1I	ACTGG	5 cut(s)	25, 31, 172, 560, 921
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	3 cut(s)	91, 418, 832
BseLI	CCNNNNNNNGG	4 cut(s)	47, 563, 587, 842
BseNI	ACTGG	5 cut(s)	25, 31, 172, 560, 921
BseXI	GCAGC	4 cut(s)	46, 590, 806, 861
Bsh1236I	CGCG	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	581
BslI	CCNNNNNNNGG	4 cut(s)	47, 563, 587, 842
BsmAI	GTCTC	2 cut(s)	397, 482
BsoBI	CYCGRG	1 cut(s)	581
Bsp1407I	TGTACA	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	423, 784, 808
BspACI	CCGC	3 cut(s)	180, 920, 957
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	120, 768, 786
BspMI	ACCTGC	1 cut(s)	367
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	779, 792
BspTI	CTTAAG	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	659
BsrI	ACTGG	5 cut(s)	25, 31, 172, 560, 921
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	3 cut(s)	423, 784, 808
BssT1I	CCWWGG	1 cut(s)	607
Bst4CI	ACNGT	6 cut(s)	9, 154, 232, 260, 712, 859
Bst6I	CTCTTC	3 cut(s)	432, 459, 900
BstAFI	CTTAAG	1 cut(s)	427
BstAUI	TGTACA	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	453, 830
BstDEI	CTNAG	1 cut(s)	1029
BstF5I	GGATG	3 cut(s)	91, 418, 832
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	1 cut(s)	874
BstKTI	GATC	3 cut(s)	426, 787, 811
BstMAI	GTCTC	2 cut(s)	397, 482
BstMBI	GATC	3 cut(s)	423, 784, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	825
BstNSI	RCATGY	2 cut(s)	509, 832
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	46, 590, 806, 861
BstX2I	RGATCY	1 cut(s)	784
BstXI	CCANNNNNNTGG	1 cut(s)	888
BstYI	RGATCY	1 cut(s)	784
BsuI	GTATCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	91, 418, 832
BtsIMutI	CAGTG	3 cut(s)	228, 265, 741
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	453, 830
CfoI	GCGC	1 cut(s)	874
Csp6I	GTAC	4 cut(s)	184, 271, 660, 860
CviAII	CATG	7 cut(s)	56, 187, 245, 506, 774, 829, 888
CviQI	GTAC	4 cut(s)	184, 271, 660, 860
DdeI	CTNAG	1 cut(s)	1029
DpnI	GATC	3 cut(s)	425, 786, 810
DpnII	GATC	3 cut(s)	423, 784, 808
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	432, 459, 900
EarI	CTCTTC	3 cut(s)	432, 459, 900
EciI	GGCGGA	1 cut(s)	935
Eco130I	CCWWGG	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	607
EcoT22I	ATGCAT	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	7 cut(s)	59, 190, 248, 509, 777, 832, 891
FatI	CATG	7 cut(s)	55, 186, 244, 505, 773, 828, 887
FauI	CCCGC	2 cut(s)	173, 964
Fnu4HI	GCNGC	4 cut(s)	60, 604, 820, 875
FokI	GGATG	3 cut(s)	98, 425, 819
Fsp4HI	GCNGC	4 cut(s)	60, 604, 820, 875
FspBI	CTAG	3 cut(s)	452, 513, 792
GlaI	GCGC	1 cut(s)	873
GluI	GCNGC	4 cut(s)	60, 604, 820, 875
HaeII	RGCGCY	1 cut(s)	875
HhaI	GCGC	1 cut(s)	874
Hin1II	CATG	7 cut(s)	59, 190, 248, 509, 777, 832, 891
Hin6I	GCGC	1 cut(s)	872
HinP1I	GCGC	1 cut(s)	872
HphI	GGTGA	5 cut(s)	30, 345, 707, 857, 988
Hpy166II	GTNNAC	2 cut(s)	662, 690
Hpy188I	TCNGA	2 cut(s)	402, 529
Hpy188III	TCNNGA	2 cut(s)	326, 682
Hpy8I	GTNNAC	2 cut(s)	662, 690
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	4 cut(s)	225, 242, 302, 441
HpyCH4III	ACNGT	6 cut(s)	9, 154, 232, 260, 712, 859
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	7 cut(s)	62, 240, 266, 593, 707, 822, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	825
HpyF3I	CTNAG	1 cut(s)	1029
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	7 cut(s)	59, 190, 248, 509, 777, 832, 891
HspAI	GCGC	1 cut(s)	872
Kzo9I	GATC	3 cut(s)	423, 784, 808
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	4 cut(s)	46, 590, 806, 861
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	3 cut(s)	452, 513, 792
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	2 cut(s)	3, 508
MalI	GATC	3 cut(s)	425, 786, 810
MboI	GATC	3 cut(s)	423, 784, 808
MboII	GAAGA	4 cut(s)	293, 449, 476, 917
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	784
MluCI	AATT	3 cut(s)	42, 618, 979
MmeI	TCCRAC	2 cut(s)	285, 812
MnlI	CCTC	9 cut(s)	117, 132, 133, 300, 403, 460, 781, 888, 967
Mph1103I	ATGCAT	1 cut(s)	834
MroXI	GAANNNNTTC	2 cut(s)	214, 285
MseI	TTAA	9 cut(s)	99, 204, 275, 428, 459, 675, 900, 927, 1013
MslI	CAYNNNNRTG	2 cut(s)	827, 886
MspCI	CTTAAG	1 cut(s)	427
MunI	CAATTG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	825
NdeII	GATC	3 cut(s)	423, 784, 808
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	7 cut(s)	59, 190, 248, 509, 777, 832, 891
NlaIV	GGNNCC	3 cut(s)	120, 768, 786
NsiI	ATGCAT	1 cut(s)	834
NspI	RCATGY	2 cut(s)	509, 832
PaeI	GCATGC	1 cut(s)	832
PaqCI	CACCTGC	1 cut(s)	367
PciI	ACATGT	1 cut(s)	505
PdmI	GAANNNNTTC	2 cut(s)	214, 285
PflFI	GACNNNGTC	1 cut(s)	174
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	4 cut(s)	61, 605, 821, 876
PscI	ACATGT	1 cut(s)	505
PshBI	ATTAAT	1 cut(s)	927
PspN4I	GGNNCC	3 cut(s)	120, 768, 786
PsrI	GAACNNNNNNTAC	2 cut(s)	643, 675
PsuI	RGATCY	1 cut(s)	784
PsyI	GACNNNGTC	1 cut(s)	174
RsaI	GTAC	4 cut(s)	185, 272, 661, 861
RsaNI	GTAC	4 cut(s)	184, 271, 660, 860
RseI	CAYNNNNRTG	2 cut(s)	827, 886
SaqAI	TTAA	9 cut(s)	99, 204, 275, 428, 459, 675, 900, 927, 1013
SatI	GCNGC	4 cut(s)	60, 604, 820, 875
Sau3AI	GATC	3 cut(s)	423, 784, 808
ScaI	AGTACT	2 cut(s)	272, 861
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	1 cut(s)	840
SmiI	ATTTAAAT	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	827, 886
SmlI	CTYRAG	2 cut(s)	367, 427
SmoI	CTYRAG	2 cut(s)	367, 427
SphI	GCATGC	1 cut(s)	832
Sse9I	AATT	3 cut(s)	42, 618, 979
SsiI	CCGC	3 cut(s)	180, 920, 957
SspMI	CTAG	3 cut(s)	452, 513, 792
StyI	CCWWGG	1 cut(s)	607
SwaI	ATTTAAAT	1 cut(s)	100
TaaI	ACNGT	6 cut(s)	9, 154, 232, 260, 712, 859
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	1 cut(s)	807
TasI	AATT	3 cut(s)	42, 618, 979
TatI	WGTACW	3 cut(s)	270, 659, 859
Tru1I	TTAA	9 cut(s)	99, 204, 275, 428, 459, 675, 900, 927, 1013
Tru9I	TTAA	9 cut(s)	99, 204, 275, 428, 459, 675, 900, 927, 1013
TscAI	CASTG	3 cut(s)	235, 265, 748
TseI	GCWGC	4 cut(s)	59, 603, 819, 874
TspDTI	ATGAA	5 cut(s)	174, 261, 314, 488, 630
TspRI	CASTG	3 cut(s)	235, 265, 748
Tth111I	GACNNNGTC	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	563
Vha464I	CTTAAG	1 cut(s)	427
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	2 cut(s)	618, 979
XceI	RCATGY	2 cut(s)	509, 832
XmnI	GAANNNNTTC	2 cut(s)	214, 285
XspI	CTAG	3 cut(s)	452, 513, 792
ZrmI	AGTACT	2 cut(s)	272, 861
Zsp2I	ATGCAT	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.