Prupe.8G225100_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016759
Physical Location & Seq
Forward (+)
20259323 .. 20261034
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G225100.1

Sequence Viewer

Length: 1020 bp
ATGGAGACACTACTAGATCAGAAGCTTGTTTCAAGCTGGTTTGATGTTCAATCTGTGCCCCAAACTTATGTCCACCCACCCGAAAAACGACCTGGGAAGCTCAACGTTCCTCTATGCAACAACATCCCAGTAGTTGATCTTGGAAGCCATGATCGCCGTGACACCATTCATCGAATTTCCAAAGCTAGTGAAGAGTTCGGATTTTTCCAGGTCATCAATCATGGTGTTCCCATTAAGTTAGTTGATGATACAATGAGTGTTTTCAAGGAGTTTCATGCACTGCCCCAAAAAGACAAGGCAATTGAAGGCTCCAAGGACCCAAGTAGAAGCTGCAAGCTCTACACAAGCAGTGAAAACTATGCAAATGAAGAGGTTCACTACTGGAGAGATGTCTTGACCCACCCTGGTCATCCCTTTGAACACTACATGCAGTTTTGGCCTGAAAAACCAACTCGATACCGAGAGGTTGTTAAGGCTTATCTGGAGGAGGTAAGAAACTTGAGCTATGTGATTCTGGAGCTGCTTGCTGAAGGCTTGGGAATTGGCACTGAGTTCTTCTGTGGTGGACTTACTGAAAGTCCAGTGCTGTTGTCCAATCATTATCCACCATGCCCAGACCCTAGTTTAGCATTGGGATTAACCAAACATTGTGACCCTACCCTTATAACCATTTTACTTCAAGATGCAGATGGCCTTCAAGTTTTCAAGGATGGGAACTGGATTGGTGTTGAGCCTGTTCCTAGTGCTTTTGTGGTTAACATAGGCTATGTCTTGCAGATGATCAGCAACTCGAAGTTTAAAGGCGCCGAGCATAGAGTGGTAACAAATTCAAGAGTTGCACGGACAACAATCGCGTATTTCATTCATCCATCGAATGAGAGCCTTATAGCACCTGCAAAAGCTTTATGCAATCCACCATTGTACAGGTCCATGAAGTTTAAAGAGTTCCTCAGAAACTTTAAATCCAAGGCTGCCAATGCTGAAGCTGTGTTGAAGGTTATAAGCCTCTCAAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

340

Amino Acids

38.2

Weight (kDa)

6.67

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016759)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21690 FvH4_2g21690 FvH4_2g21690
malus_domestica MD05G1199300.v1.1 MD10G1185400.v1.1
prunus_persica Prupe.8G225100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0288371
rosa_laevigata RLG00000012410
rosa_multiflora Rmu_sc0001038.1_g000009
rosa_roxburghii Rroxscaffold_7G00180120
rosa_rugosa Rorug06G0196000.1
rosa_samantha Rh6AG306900 Rh6BG312900
rosa_wichuraiana Rw6G026550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 665, 1001
AarI CACCTGC 1 cut(s) 901
Acc36I ACCTGC 1 cut(s) 901
AccB1I GGYRCC 1 cut(s) 803
AccII CGCG 1 cut(s) 854
AclI AACGTT 1 cut(s) 105
AcsI RAATTY 2 cut(s) 174, 826
AcuI CTGAAG 2 cut(s) 549, 1002
AcyI GRCGYC 1 cut(s) 804
AfaI GTAC 1 cut(s) 923
AjnI CCWGG 3 cut(s) 91, 207, 403
AoxI GGCC 2 cut(s) 437, 691
ApeKI GCWGC 3 cut(s) 330, 520, 971
ApoI RAATTY 2 cut(s) 174, 826
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 2 cut(s) 316, 927
AvaII GGWCC 2 cut(s) 316, 927
BaeGI GKGCMC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 803
BbvI GCAGC 3 cut(s) 317, 507, 958
BccI CCATC 3 cut(s) 683, 704, 877
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 3 cut(s) 93, 209, 405
BclI TGATCA 1 cut(s) 780
BfaI CTAG 5 cut(s) 14, 186, 621, 741, 1018
BfoI RGCGCY 1 cut(s) 807
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 3 cut(s) 331, 521, 972
BlsI GCNGC 3 cut(s) 332, 522, 973
Bme1390I CCNGG 3 cut(s) 93, 209, 405
Bme18I GGWCC 2 cut(s) 316, 927
BmgT120I GGNCC 2 cut(s) 316, 927
BmiI GGNNCC 3 cut(s) 310, 318, 805
BmrFI CCNGG 3 cut(s) 93, 209, 405
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 673
BmuI ACTGGG 1 cut(s) 122
BpmI CTGGAG 3 cut(s) 403, 503, 536
BpuEI CTTGAG 2 cut(s) 520, 994
BsaHI GRCGYC 1 cut(s) 804
BsaJI CCNNGG 4 cut(s) 92, 312, 403, 966
Bse1I ACTGG 4 cut(s) 128, 386, 581, 722
BseBI CCWGG 3 cut(s) 93, 209, 405
BseDI CCNNGG 4 cut(s) 92, 312, 403, 966
BseGI GGATG 4 cut(s) 123, 409, 715, 865
BseMII CTCAG 2 cut(s) 540, 964
BseNI ACTGG 4 cut(s) 128, 386, 581, 722
BseRI GAGGAG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 3 cut(s) 317, 507, 958
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 2 cut(s) 439, 693
BshNI GGYRCC 1 cut(s) 803
BsnI GGCC 2 cut(s) 439, 693
Bsp1286I GDGCHC 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 921
Bsp143I GATC 4 cut(s) 16, 136, 151, 780
BspANI GGCC 2 cut(s) 439, 693
BspCNI CTCAG 2 cut(s) 541, 963
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 3 cut(s) 310, 318, 805
BspMI ACCTGC 1 cut(s) 901
BspT107I GGYRCC 1 cut(s) 803
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 4 cut(s) 128, 386, 581, 722
BssECI CCNNGG 4 cut(s) 92, 312, 403, 966
BssMI GATC 4 cut(s) 16, 136, 151, 780
BssNI GRCGYC 1 cut(s) 804
BssT1I CCWWGG 2 cut(s) 312, 966
Bst2UI CCWGG 3 cut(s) 93, 209, 405
Bst6I CTCTTC 2 cut(s) 186, 363
BstACI GRCGYC 1 cut(s) 804
BstAUI TGTACA 1 cut(s) 921
BstC8I GCNNGC 2 cut(s) 335, 525
BstDEI CTNAG 2 cut(s) 549, 950
BstF5I GGATG 4 cut(s) 123, 409, 715, 865
BstFNI CGCG 1 cut(s) 854
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 4 cut(s) 19, 139, 154, 783
BstMBI GATC 4 cut(s) 16, 136, 151, 780
BstMWI GCNNNNNNNGC 3 cut(s) 153, 436, 977
BstNI CCWGG 3 cut(s) 93, 209, 405
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 3 cut(s) 91, 207, 403
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 3 cut(s) 317, 507, 958
BsuRI GGCC 2 cut(s) 439, 693
BtsCI GGATG 4 cut(s) 123, 409, 715, 865
BtsI GCAGTG 2 cut(s) 278, 355
BtsIMutI CAGTG 4 cut(s) 278, 355, 546, 588
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 2 cut(s) 335, 525
CfoI GCGC 1 cut(s) 806
Cfr13I GGNCC 2 cut(s) 316, 927
Csp6I GTAC 1 cut(s) 922
CviAII CATG 6 cut(s) 149, 221, 275, 427, 609, 931
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 2 cut(s) 549, 950
DinI GGCGCC 1 cut(s) 805
DpnI GATC 4 cut(s) 18, 138, 153, 782
DpnII GATC 4 cut(s) 16, 136, 151, 780
DraI TTTAAA 3 cut(s) 799, 940, 961
Eam1104I CTCTTC 2 cut(s) 186, 363
EarI CTCTTC 2 cut(s) 186, 363
Eco130I CCWWGG 2 cut(s) 312, 966
Eco47I GGWCC 2 cut(s) 316, 927
Eco57I CTGAAG 2 cut(s) 549, 1002
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 91, 207, 403
EcoT14I CCWWGG 2 cut(s) 312, 966
EgeI GGCGCC 1 cut(s) 805
EheI GGCGCC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 312, 966
FaeI CATG 6 cut(s) 152, 224, 278, 430, 612, 934
FatI CATG 6 cut(s) 148, 220, 274, 426, 608, 930
FbaI TGATCA 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 331, 521, 972
FokI GGATG 4 cut(s) 110, 396, 722, 852
Fsp4HI GCNGC 3 cut(s) 331, 521, 972
FspBI CTAG 5 cut(s) 14, 186, 621, 741, 1018
GlaI GCGC 1 cut(s) 805
GluI GCNGC 3 cut(s) 331, 521, 972
GsuI CTGGAG 3 cut(s) 403, 503, 536
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 2 cut(s) 439, 693
HhaI GCGC 1 cut(s) 806
Hin1I GRCGYC 1 cut(s) 804
Hin1II CATG 6 cut(s) 152, 224, 278, 430, 612, 934
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 2 cut(s) 23, 900
HinfI GANTC 1 cut(s) 511
HpaI GTTAAC 1 cut(s) 757
Hpy166II GTNNAC 4 cut(s) 73, 376, 566, 757
Hpy188I TCNGA 3 cut(s) 21, 200, 953
Hpy188III TCNNGA 5 cut(s) 394, 482, 515, 680, 831
Hpy8I GTNNAC 4 cut(s) 73, 376, 566, 757
HpyAV CCTTC 4 cut(s) 299, 524, 704, 988
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 436, 977
HpyF3I CTNAG 2 cut(s) 549, 950
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 804
Hsp92II CATG 6 cut(s) 152, 224, 278, 430, 612, 934
HspAI GCGC 1 cut(s) 804
KasI GGCGCC 1 cut(s) 803
Ksp22I TGATCA 1 cut(s) 780
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 4 cut(s) 16, 136, 151, 780
LmnI GCTCC 2 cut(s) 314, 517
Lsp1109I GCAGC 3 cut(s) 317, 507, 958
LweI GCATC 1 cut(s) 673
MaeI CTAG 5 cut(s) 14, 186, 621, 741, 1018
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 158, 650, 820
MalI GATC 4 cut(s) 18, 138, 153, 782
MboI GATC 4 cut(s) 16, 136, 151, 780
MboII GAAGA 3 cut(s) 203, 380, 547
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 4 cut(s) 174, 300, 540, 826
Mly113I GGCGCC 1 cut(s) 804
MnlI CCTC 7 cut(s) 120, 364, 457, 478, 481, 959, 1016
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 7 cut(s) 234, 471, 638, 756, 798, 939, 960
MspR9I CCNGG 3 cut(s) 93, 209, 405
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 3 cut(s) 93, 209, 405
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 3 cut(s) 153, 436, 977
NarI GGCGCC 1 cut(s) 804
NdeII GATC 4 cut(s) 16, 136, 151, 780
NlaIII CATG 6 cut(s) 152, 224, 278, 430, 612, 934
NlaIV GGNNCC 3 cut(s) 310, 318, 805
NmeAIII GCCGAG 1 cut(s) 832
NmuCI GTSAC 2 cut(s) 158, 650
NspI RCATGY 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 901
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 511
PkrI GCNGC 3 cut(s) 332, 522, 973
PluTI GGCGCC 1 cut(s) 807
PpuMI RGGWCCY 1 cut(s) 316
PsiI TTATAA 2 cut(s) 665, 1001
Psp1406I AACGTT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 3 cut(s) 91, 207, 403
PspGI CCWGG 3 cut(s) 91, 207, 403
PspN4I GGNNCC 3 cut(s) 310, 318, 805
PspPI GGNCC 2 cut(s) 316, 927
PspPPI RGGWCCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
SaqAI TTAA 7 cut(s) 234, 471, 638, 756, 798, 939, 960
SatI GCNGC 3 cut(s) 331, 521, 972
Sau3AI GATC 4 cut(s) 16, 136, 151, 780
Sau96I GGNCC 2 cut(s) 316, 927
ScrFI CCNGG 3 cut(s) 93, 209, 405
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 1 cut(s) 673
SfoI GGCGCC 1 cut(s) 805
SinI GGWCC 2 cut(s) 316, 927
SmlI CTYRAG 2 cut(s) 499, 1009
SmoI CTYRAG 2 cut(s) 499, 1009
Sse9I AATT 4 cut(s) 174, 300, 540, 826
SspDI GGCGCC 1 cut(s) 803
SspMI CTAG 5 cut(s) 14, 186, 621, 741, 1018
StyD4I CCNGG 3 cut(s) 91, 207, 403
StyI CCWWGG 2 cut(s) 312, 966
TaiI ACGT 1 cut(s) 108
TaqI TCGA 4 cut(s) 172, 454, 791, 872
TasI AATT 4 cut(s) 174, 300, 540, 826
TatI WGTACW 1 cut(s) 921
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 7 cut(s) 234, 471, 638, 756, 798, 939, 960
Tru9I TTAA 7 cut(s) 234, 471, 638, 756, 798, 939, 960
TscAI CASTG 4 cut(s) 285, 355, 553, 588
TseFI GTSAC 2 cut(s) 158, 650
TseI GCWGC 3 cut(s) 330, 520, 971
Tsp45I GTSAC 2 cut(s) 158, 650
TspDTI ATGAA 6 cut(s) 158, 263, 381, 850, 854, 947
TspGWI ACGGA 1 cut(s) 856
TspRI CASTG 4 cut(s) 285, 355, 553, 588
VpaK11BI GGWCC 2 cut(s) 316, 927
XapI RAATTY 2 cut(s) 174, 826
XceI RCATGY 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 5 cut(s) 14, 186, 621, 741, 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.