Rh6AG306900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016759
Physical Location & Seq
Forward (+)
50497712 .. 50499428
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG306900.1

Sequence Viewer

Length: 786 bp
ATGAGTGTTTTCAAGGAGTTCCATGAAATGCCCTCCAAAGACAAGGCAAGAGAATGCTCCAAGGATCCAAGTCGAGACTGCAAGCTCTACACAAGCAGTGAAAACTACGCAAATGAAGAAGTTCACTACTGGAGAGATGCATTGACTCACCCTGGTCATACTTCAGAAAAATACCTGCAATATTGGCCTCAAAAACCAACTCAGTACCGAGATGTTGTTAAGCGGTATTTGGAGGAGGCGAGGAACTTGGGTGCTGTGATTCTGGAGCTGCTTGCTGAAGGGTTGGGACTTAGCTCTGAGTTCTTCAATGGTGGGCTTAGTGATAGTCCAATGCTGTTGTCGAATCATTATCCGCCGTGTCCGGATCCTAGCTTAACTTTGGGGTTAACCAAACACCGGGATCCTACCCTCATAACCATTTTGCTTCAAGATACAGAAGGGCTTCAAGTTTTCAAAGATGGGAATTGGATTGGGGTTGAGCCTATTTCTACAGCTTTTGTGGTCAACATAGGCTATGTACTCCAGATTATCAGCAACTCAAAGTTTAAAGGTGCAGAACACAGAGTGGTGACTAATTCCAGAGTCGCAAGGACAACCATTGCTTACTTGATTTATCCTTCTAATGAGAACCTTATAGAACCTGCAAAAGCTCTATGCAACCAAAATCCGCCACTCTACCAATCGTTGACATTTAAGGAGTTCCTTAAAAACTTCAAGGCAAACTTTAAATCTAAAATCGACAGTACTGAAGCAGTGTTGCAGACTATAAGCCTCTCAGGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

261

Amino Acids

29.51

Weight (kDa)

6.39

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 110 - 204 2.4e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016759)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21690 FvH4_2g21690 FvH4_2g21690
malus_domestica MD05G1199300.v1.1 MD10G1185400.v1.1
prunus_persica Prupe.8G225100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0288371
rosa_laevigata RLG00000012410
rosa_multiflora Rmu_sc0001038.1_g000009
rosa_roxburghii Rroxscaffold_7G00180120
rosa_rugosa Rorug06G0196000.1
rosa_samantha Rh6AG306900 Rh6BG312900
rosa_wichuraiana Rw6G026550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 183, 649
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 3 cut(s) 223, 353, 668
AclWI GGATC 6 cut(s) 59, 72, 359, 372, 395, 408
AcuI CTGAAG 3 cut(s) 147, 297, 768
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 3 cut(s) 206, 519, 745
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 6 cut(s) 13, 307, 428, 446, 454, 715
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 7 cut(s) 85, 268, 294, 372, 494, 650, 783
AluI AGCT 7 cut(s) 85, 268, 294, 372, 494, 650, 783
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 6 cut(s) 59, 72, 359, 372, 395, 408
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 268
Asp700I GAANNNNTTC 2 cut(s) 120, 441
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 140, 580
BamHI GGATCC 3 cut(s) 64, 364, 400
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 452
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 369, 784
BfmI CTRYAG 1 cut(s) 489
BfuAI ACCTGC 2 cut(s) 183, 649
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 745
Bme1390I CCNGG 2 cut(s) 153, 398
BmiI GGNNCC 3 cut(s) 66, 366, 402
BmrFI CCNGG 2 cut(s) 153, 398
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 3 cut(s) 151, 284, 506
BpuMI CCSGG 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 60, 151
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 60, 151
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 2 cut(s) 215, 288
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 362, 397
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 64, 364, 400
BspACI CCGC 3 cut(s) 223, 353, 668
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 214, 289
BspEI TCCGGA 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 66, 366, 402
BspMI ACCTGC 2 cut(s) 183, 649
BspPI GGATC 6 cut(s) 59, 72, 359, 372, 395, 408
BsrDI GCAATG 1 cut(s) 597
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 60, 151
BssMI GATC 3 cut(s) 64, 364, 400
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 83, 273
BstDEI CTNAG 5 cut(s) 201, 290, 297, 317, 775
BstKTI GATC 3 cut(s) 67, 367, 403
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 64, 364, 400
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 151, 396
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 3 cut(s) 64, 364, 400
BstYI RGATCY 3 cut(s) 64, 364, 400
BsuRI GGCC 1 cut(s) 187
BtsI GCAGTG 2 cut(s) 103, 759
BtsIMutI CAGTG 2 cut(s) 103, 759
BveI ACCTGC 2 cut(s) 183, 649
Cac8I GCNNGC 2 cut(s) 83, 273
Csp6I GTAC 3 cut(s) 205, 518, 744
CviAII CATG 1 cut(s) 23
CviQI GTAC 3 cut(s) 205, 518, 744
DdeI CTNAG 5 cut(s) 201, 290, 297, 317, 775
DpnI GATC 3 cut(s) 66, 366, 402
DpnII GATC 3 cut(s) 64, 364, 400
DraI TTTAAA 2 cut(s) 547, 727
DraIII CACNNNGTG 1 cut(s) 565
EciI GGCGGA 2 cut(s) 342, 657
Eco130I CCWWGG 1 cut(s) 60
Eco57I CTGAAG 3 cut(s) 147, 297, 768
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 26
FaiI YATR 8 cut(s) 24, 159, 413, 509, 516, 635, 655, 767
FalI AAGNNNNNCTT 2 cut(s) 707, 739
FaqI GGGAC 1 cut(s) 300
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 2 cut(s) 369, 784
GluI GCNGC 1 cut(s) 269
GsuI CTGGAG 3 cut(s) 151, 284, 506
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 362, 397
Hin1II CATG 1 cut(s) 26
HincII GTYRAC 3 cut(s) 387, 505, 687
HindII GTYRAC 3 cut(s) 387, 505, 687
HinfI GANTC 4 cut(s) 145, 259, 343, 582
HpaI GTTAAC 1 cut(s) 387
HpaII CCGG 2 cut(s) 362, 397
HphI GGTGA 2 cut(s) 140, 580
Hpy166II GTNNAC 4 cut(s) 124, 387, 505, 687
Hpy188I TCNGA 2 cut(s) 166, 298
Hpy188III TCNNGA 6 cut(s) 74, 263, 362, 428, 523, 579
Hpy8I GTNNAC 4 cut(s) 124, 387, 505, 687
HpyAV CCTTC 3 cut(s) 272, 431, 627
HpyCH4III ACNGT 1 cut(s) 743
HpyCH4V TGCA 7 cut(s) 81, 140, 178, 554, 644, 657, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 5 cut(s) 201, 290, 297, 317, 775
Hsp92II CATG 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 361
KspAI GTTAAC 1 cut(s) 387
Kzo9I GATC 3 cut(s) 64, 364, 400
LmnI GCTCC 2 cut(s) 62, 265
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 369, 784
MaeIII GTNAC 1 cut(s) 568
MalI GATC 3 cut(s) 66, 366, 402
MboI GATC 3 cut(s) 64, 364, 400
MboII GAAGA 2 cut(s) 128, 295
MflI RGATCY 3 cut(s) 64, 364, 400
MluCI AATT 2 cut(s) 463, 574
MlyI GAGTC 2 cut(s) 139, 591
MnlI CCTC 7 cut(s) 43, 198, 226, 229, 234, 419, 782
Mph1103I ATGCAT 1 cut(s) 142
MroI TCCGGA 1 cut(s) 361
MroXI GAANNNNTTC 2 cut(s) 120, 441
MseI TTAA 7 cut(s) 219, 374, 386, 546, 693, 705, 726
MspI CCGG 2 cut(s) 362, 397
MspR9I CCNGG 2 cut(s) 153, 398
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 184
NciI CCSGG 1 cut(s) 398
NdeII GATC 3 cut(s) 64, 364, 400
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 3 cut(s) 66, 366, 402
NmuCI GTSAC 1 cut(s) 568
NsiI ATGCAT 1 cut(s) 142
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 2 cut(s) 120, 441
PfeI GAWTC 2 cut(s) 259, 343
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 2 cut(s) 139, 590
PpsI GAGTC 2 cut(s) 139, 590
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 66, 366, 402
PsuI RGATCY 3 cut(s) 64, 364, 400
RsaI GTAC 3 cut(s) 206, 519, 745
RsaNI GTAC 3 cut(s) 205, 518, 744
SaqAI TTAA 7 cut(s) 219, 374, 386, 546, 693, 705, 726
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 3 cut(s) 64, 364, 400
ScaI AGTACT 1 cut(s) 745
SchI GAGTC 2 cut(s) 139, 591
ScrFI CCNGG 2 cut(s) 153, 398
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 489
Sse9I AATT 2 cut(s) 463, 574
SsiI CCGC 3 cut(s) 223, 353, 668
SspI AATATT 1 cut(s) 182
SspMI CTAG 2 cut(s) 369, 784
StyD4I CCNGG 2 cut(s) 151, 396
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 743
TaqI TCGA 3 cut(s) 73, 341, 738
TasI AATT 2 cut(s) 463, 574
TatI WGTACW 2 cut(s) 517, 743
TfiI GAWTC 2 cut(s) 259, 343
Tru1I TTAA 7 cut(s) 219, 374, 386, 546, 693, 705, 726
Tru9I TTAA 7 cut(s) 219, 374, 386, 546, 693, 705, 726
TscAI CASTG 2 cut(s) 103, 759
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 2 cut(s) 39, 129
TspRI CASTG 2 cut(s) 103, 759
XmnI GAANNNNTTC 2 cut(s) 120, 441
XspI CTAG 2 cut(s) 369, 784
ZrmI AGTACT 1 cut(s) 745
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.