Prupe.I003800_v2.0.a1

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
scaffold_30
OG0018908
Physical Location & Seq
Forward (+)
59 .. 1098
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.I003800.1

Sequence Viewer

Length: 519 bp
ATGTTAAGCAAGCTCGGAAAGATACCTGATAAAGTAAAAGCTGTGGTAGAAAACACCGAATTGGATGCTTTTATATCCTCTCCATTGAGATATAGGCATCCTTGGGAGCTTCTTTGGGGAAACATCAGCAAAGGCAATGCTTGTGTCGCAGGAGACGCGCTCCACCCCATGACCCCAGACCTTGGCCAAGGCGGCTGCTGTGCATTAGAAGACAGCGTTGTATTGGCAAGGTGTCTTGGTGAGGCCTTGTTGAAGAACTCAGGGGGAGAAAGAAAAGATAAGGAGGGTGTAGAAGGAAAGGAAGAGTATGAGAGGATTGAGATGGGGTTGAACAAGTATGCCAATGAGAGGAGATGGAGAAGCTTTGATCTGATTAGTACATCTTATGTGGTTGGTTTCTTACAAGAGAGTAATGGAAAATTTATGAACTTCTTCAGGGACAAATGTTTATCTCCAATCCTGGCTGGTTTGCGGTTGAAGAAGGCAGACTTTGATTGTGGAAAGCTCAGCATCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

173

Amino Acids

19.12

Weight (kDa)

7.56

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018908)

Species Orthologous Gene IDs
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167400_v2.0.a1 Prupe.I003800_v2.0.a1 Prupe.I004000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0278571
rosa_multiflora Rmu_sc0000258.1_g000078
rosa_roxburghii Rroxscaffold_7G00190180
rosa_rugosa Rorug06G0118400
rosa_samantha Rh6DG225700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AccII CGCG 1 cut(s) 158
AciI CCGC 2 cut(s) 192, 472
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 182, 348
AgsI TTSAA 3 cut(s) 253, 331, 478
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 5 cut(s) 13, 41, 109, 363, 505
AluI AGCT 5 cut(s) 13, 41, 109, 363, 505
Alw26I GTCTC 1 cut(s) 147
AoxI GGCC 2 cut(s) 184, 243
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 251
BalI TGGCCA 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 182
BccI CCATC 2 cut(s) 316, 348
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 147
BglI GCCNNNNNGGC 1 cut(s) 192
BisI GCNGC 2 cut(s) 193, 196
BlpI GCTNAGC 1 cut(s) 506
BlsI GCNGC 2 cut(s) 194, 197
Bme1390I CCNGG 1 cut(s) 461
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 2 cut(s) 55, 106
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 144, 176
Bpu1102I GCTNAGC 1 cut(s) 506
BsaJI CCNNGG 3 cut(s) 101, 181, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 348
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 101, 181, 187
BseGI GGATG 2 cut(s) 70, 97
BseLI CCNNNNNNNGG 2 cut(s) 182, 348
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 2 cut(s) 186, 245
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 182, 348
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 2 cut(s) 186, 245
Bsp143I GATC 1 cut(s) 367
Bsp1720I GCTNAGC 1 cut(s) 506
BspACI CCGC 2 cut(s) 192, 472
BspANI GGCC 2 cut(s) 186, 245
BspCNI CTCAG 2 cut(s) 272, 519
BspFNI CGCG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 101, 181, 187
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 3 cut(s) 101, 181, 187
Bst2UI CCWGG 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 259, 506
BstF5I GGATG 2 cut(s) 70, 97
BstFNI CGCG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 3 cut(s) 146, 155, 192
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 216
BsuRI GGCC 2 cut(s) 186, 245
BtsCI GGATG 2 cut(s) 70, 97
Cac8I GCNNGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 160
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 378
CviAII CATG 1 cut(s) 169
CviJI RGCY 9 cut(s) 13, 41, 109, 186, 195, 245, 363, 464, 505
CviKI_1 RGCY 9 cut(s) 13, 41, 109, 186, 195, 245, 363, 464, 505
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 259, 506
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 3 cut(s) 101, 181, 187
Eco147I AGGCCT 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 3 cut(s) 101, 181, 187
ErhI CCWWGG 3 cut(s) 101, 181, 187
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 1 cut(s) 172
FaiI YATR 7 cut(s) 74, 93, 170, 309, 339, 387, 425
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 193, 196
FokI GGATG 2 cut(s) 77, 84
Fsp4HI GCNGC 2 cut(s) 193, 196
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 193, 196
HaeIII GGCC 2 cut(s) 186, 245
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 361
HphI GGTGA 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 17, 372
HpyAV CCTTC 2 cut(s) 287, 475
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 155, 192
HpyF3I CTNAG 2 cut(s) 259, 506
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 106, 165
LpnPI CCDG 8 cut(s) 39, 135, 189, 246, 421, 446, 450, 473
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 2 cut(s) 55, 106
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 5 cut(s) 221, 265, 314, 424, 490
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 2 cut(s) 59, 419
MluNI TGGCCA 1 cut(s) 186
MnlI CCTC 5 cut(s) 88, 235, 277, 306, 342
Mox20I TGGCCA 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 431
MscI TGGCCA 1 cut(s) 186
MseI TTAA 2 cut(s) 5, 517
Msp20I TGGCCA 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 146, 155, 192
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 172
PceI AGGCCT 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 194, 197
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SaqAI TTAA 2 cut(s) 5, 517
SatI GCNGC 2 cut(s) 193, 196
Sau3AI GATC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 461
SetI ASST 8 cut(s) 15, 28, 43, 111, 183, 233, 365, 507
SfaNI GCATC 2 cut(s) 55, 106
Sse9I AATT 2 cut(s) 59, 419
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 2 cut(s) 192, 472
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 3 cut(s) 101, 181, 187
TasI AATT 2 cut(s) 59, 419
TatI WGTACW 1 cut(s) 377
TauI GCSGC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 5, 517
Tru9I TTAA 2 cut(s) 5, 517
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 440
Van91I CCANNNNNTGG 1 cut(s) 182
XapI RAATTY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.