Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0018908

Physical Location & Seq

Genomic Coordinates Reverse (-)

331875 .. 332411

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000258.1_g000078.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgtctatagagaaagagctagagaagaaccctgctcagttgaaaaaatatatcttacgcaagcttggaaaggtacaagatgaagtaagggctgttatagaaaacactgaattggatgcttttatatcctctccagtgagatataggcacccttgggaactgctttggggaaatattagcaaaggtggtgtatgtgttgctggagacgcactccaccccatgaccccagacatcggccaaggtggctgtgctgcattagaagacggtgttgtattagcaagatgtcttggtgaggctttgttgaagaaccggaggcaagaaattagagataaagatgaagaacgaaaacaggaatgtaagaggattgaaatggggttgaggaattatgccagtgagaggaaatggagaagcattgatctgattattacatcttatgtgttttatttaatacaggagattgatggaaaaatactgtctttcttgaggaacaagttttttttctccaatcctaccctggttgctgttgaagaaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

178

Amino Acids

20.38

Weight (kDa)

7.63

Isoelectric Point (pI)

60.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018908)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G167400_v2.0.a1 Prupe.8G167400_v2.0.a1 Prupe.I003800_v2.0.a1 Prupe.I004000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0278571
rosa_multiflora	Rmu_sc0000258.1_g000078
rosa_roxburghii	Rroxscaffold_7G00190180
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6DG225700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	235
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	233, 396
AgsI	TTSAA	4 cut(s)	43, 304, 368, 527
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	2 cut(s)	19, 64
AluI	AGCT	2 cut(s)	19, 64
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	2 cut(s)	117, 222
BpuEI	CTTGAG	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	152, 238, 513
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 396
Bse1I	ACTGG	2 cut(s)	134, 390
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	152, 238, 513
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	233, 396
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	134, 390
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	233, 396
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	134, 390
BssECI	CCNNGG	3 cut(s)	152, 238, 513
BssMI	GATC	1 cut(s)	415
BssT1I	CCWWGG	2 cut(s)	152, 238
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	266, 474
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 243
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	3 cut(s)	105, 141, 397
Cac8I	GCNNGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	7 cut(s)	19, 64, 92, 237, 246, 296, 534
CviKI_1	RGCY	7 cut(s)	19, 64, 92, 237, 246, 296, 534
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	152, 238
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	2 cut(s)	152, 238
ErhI	CCWWGG	2 cut(s)	152, 238
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	223
FaiI	YATR	9 cut(s)	8, 51, 98, 125, 144, 193, 221, 387, 435
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	2 cut(s)	117, 222
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	62
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	1 cut(s)	481
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	2 cut(s)	266, 474
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 243
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	20
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	4 cut(s)	37, 272, 316, 350
MluCI	AATT	3 cut(s)	110, 321, 382
MnlI	CCTC	7 cut(s)	139, 286, 306, 354, 372, 390, 477
MseI	TTAA	1 cut(s)	446
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	206, 243
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	5 cut(s)	21, 66, 75, 187, 244
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	3 cut(s)	110, 321, 382
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	2 cut(s)	152, 238
TaaI	ACNGT	2 cut(s)	266, 474
TasI	AATT	3 cut(s)	110, 321, 382
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	3 cut(s)	112, 141, 397
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	96, 351
TspRI	CASTG	3 cut(s)	112, 141, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.