Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Reverse (-)

16226417 .. 16246562

Gene Structure 20146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0118400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGATTTGAAGATTGAAATGCAGAGGGCAAGGGCAATCTCTTTTGCTTCTCATACTGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTTATCAGACTATGGTACTTTCTGTTGTGGATGGTTTATGTGCTTGAGAGCTATCTCATTTCTGGTGGAATACTTAAGAAGTATAAAGCCCTTAACGTAGGTAAACTACGGTACCTGGCGATTGTAGTAGAAAGTGAAGACGCATACGAAACTTCCAAAGTTATTGAGCTTCTGCAGTGGCTAGAAGCTATTGGCGTGAAACGTGTGTGCCTCTACGACACAGAAGGAGTGTTAAAGAAATCAAAAGAAGTCATCTTGACAAAACTGAAAAATGCAGTAGTATATGAGGAAGGTTATCAAGATGAAAGCTTAGTTGACCAGAAACGCATGTCTCTAGAATTTTGTTCATTCTCTGATGGAAAAGAAGCTATAACCAAAGCAGCTAACTTGCTCTTTGTGAAGTATTCGAAATTGGCAACACTACCTGGTGATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGATGCACTTAAAGCTATTGGTGGCAGAGGGCCGGACCCTGACCTCCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGTTTTCCTGCATGGAGAATGCGATATACTGAGATTGTACACATGGGTCAGCTAAAGCATATGAGCTACGGTTCCCTAATTAAAGCCATTTACAGGTTCACCACTGTGCGCCAAAACTATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

257

Amino Acids

29.53

Weight (kDa)

8.9

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	3 cut(s)	116, 212, 684
AfiI	CCNNNNNNNGG	1 cut(s)	738
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	10, 17
AjnI	CCWGG	2 cut(s)	213, 523
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	9 cut(s)	150, 268, 287, 408, 467, 482, 581, 697, 711
AluI	AGCT	9 cut(s)	150, 268, 287, 408, 467, 482, 581, 697, 711
Alw26I	GTCTC	1 cut(s)	435
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	437
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	3 cut(s)	596, 601, 626
AsuHPI	GGTGA	2 cut(s)	539, 736
AsuII	TTCGAA	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	601, 626
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	124, 449
BciT130I	CCWGG	2 cut(s)	215, 525
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	2 cut(s)	281, 434
BfmI	CTRYAG	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	215, 525
Bme18I	GGWCC	2 cut(s)	601, 626
BmgT120I	GGNCC	3 cut(s)	596, 601, 626
BmiI	GGNNCC	3 cut(s)	212, 603, 718
BmrFI	CCNGG	2 cut(s)	215, 525
BmsI	GCATC	3 cut(s)	103, 559, 626
BpiI	GAAGAC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse1I	ACTGG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	215, 525
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	2 cut(s)	135, 571
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	491
BshFI	GGCC	1 cut(s)	598
BshNI	GGYRCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmAI	GTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	1 cut(s)	598
Bsp119I	TTCGAA	1 cut(s)	506
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	212, 603, 718
BspMAI	CTGCAG	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	637
BspT104I	TTCGAA	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	1 cut(s)	529
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	2 cut(s)	215, 525
Bst4CI	ACNGT	3 cut(s)	210, 716, 751
Bst6I	CTCTTC	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	682
BstBI	TTCGAA	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	409, 675
BstF5I	GGATG	2 cut(s)	135, 571
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 91, 578
BstNI	CCWGG	2 cut(s)	215, 525
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	213, 523
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	135, 571
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	281, 747
BveI	ACCTGC	1 cut(s)	637
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	596, 601, 626
CseI	GACGC	1 cut(s)	248
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	3 cut(s)	115, 211, 683
CviAII	CATG	5 cut(s)	427, 533, 562, 657, 688
CviQI	GTAC	3 cut(s)	115, 211, 683
DdeI	CTNAG	2 cut(s)	409, 675
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	2 cut(s)	601, 626
EcoRII	CCWGG	2 cut(s)	213, 523
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	5 cut(s)	430, 536, 565, 660, 691
FatI	CATG	5 cut(s)	426, 532, 561, 656, 687
FauNDI	CATATG	1 cut(s)	705
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	2 cut(s)	142, 578
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	2 cut(s)	281, 434
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	5 cut(s)	430, 536, 565, 660, 691
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	406
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	2 cut(s)	539, 736
Hpy166II	GTNNAC	4 cut(s)	203, 415, 685, 744
Hpy188I	TCNGA	2 cut(s)	107, 454
Hpy188III	TCNNGA	4 cut(s)	355, 398, 434, 533
Hpy8I	GTNNAC	4 cut(s)	203, 415, 685, 744
HpyAV	CCTTC	2 cut(s)	317, 383
HpyCH4III	ACNGT	3 cut(s)	210, 716, 751
HpyCH4IV	ACGT	2 cut(s)	195, 301
HpyCH4V	TGCA	7 cut(s)	22, 94, 274, 374, 572, 632, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 91, 578
HpyF3I	CTNAG	2 cut(s)	409, 675
HpySE526I	ACGT	2 cut(s)	195, 301
Hsp92II	CATG	5 cut(s)	430, 536, 565, 660, 691
HspAI	GCGC	1 cut(s)	754
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	3 cut(s)	103, 559, 626
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	2 cut(s)	281, 434
MaeII	ACGT	2 cut(s)	195, 301
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	3 cut(s)	22, 248, 548
MluCI	AATT	3 cut(s)	437, 509, 723
MnlI	CCTC	7 cut(s)	18, 89, 320, 379, 567, 587, 620
MseI	TTAA	5 cut(s)	174, 192, 332, 576, 726
MslI	CAYNNNNRTG	2 cut(s)	564, 749
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	2 cut(s)	215, 525
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	2 cut(s)	215, 525
MwoI	GCNNNNNNNGC	3 cut(s)	82, 91, 578
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	5 cut(s)	430, 536, 565, 660, 691
NlaIV	GGNNCC	3 cut(s)	212, 603, 718
NspI	RCATGY	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	749
PagI	TCATGA	1 cut(s)	532
PctI	GAATGC	1 cut(s)	669
PkrI	GCNGC	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	213, 523
PspGI	CCWGG	2 cut(s)	213, 523
PspN4I	GGNNCC	3 cut(s)	212, 603, 718
PspPI	GGNCC	3 cut(s)	596, 601, 626
PstI	CTGCAG	1 cut(s)	276
RsaI	GTAC	3 cut(s)	116, 212, 684
RsaNI	GTAC	3 cut(s)	115, 211, 683
RseI	CAYNNNNRTG	2 cut(s)	564, 749
SaqAI	TTAA	5 cut(s)	174, 192, 332, 576, 726
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	3 cut(s)	596, 601, 626
ScrFI	CCNGG	2 cut(s)	215, 525
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	3 cut(s)	103, 559, 626
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	506
SinI	GGWCC	2 cut(s)	601, 626
SmiMI	CAYNNNNRTG	2 cut(s)	564, 749
SmlI	CTYRAG	2 cut(s)	143, 173
SmoI	CTYRAG	2 cut(s)	143, 173
Sse9I	AATT	3 cut(s)	437, 509, 723
SspMI	CTAG	2 cut(s)	281, 434
StyD4I	CCNGG	2 cut(s)	213, 523
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	3 cut(s)	210, 716, 751
TaiI	ACGT	2 cut(s)	198, 304
TaqI	TCGA	1 cut(s)	506
TasI	AATT	3 cut(s)	437, 509, 723
TatI	WGTACW	1 cut(s)	682
Tru1I	TTAA	5 cut(s)	174, 192, 332, 576, 726
Tru9I	TTAA	5 cut(s)	174, 192, 332, 576, 726
TscAI	CASTG	2 cut(s)	281, 754
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	3 cut(s)	417, 435, 549
TspRI	CASTG	2 cut(s)	281, 754
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	601, 626
XapI	RAATTY	1 cut(s)	437
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	2 cut(s)	281, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.