Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Reverse (-)

13666914 .. 13672176

Gene Structure 5263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15550.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTATGCAGAACATTTTGTCATCTCAAAGAGTGAAGCTCTTCAACGTGCAAGGAATCTTGAGCTTGATTTAGTCGAGGTTCAACACTCTGGTAATCCTCCTGTTTGTAAAATCATGGATTACCACAAGGAGAGGTATAAACAAGTAATAAGGGAGAAAGAGCGGATTAAAATCAAGTCTAAGGAAGTTAAGACTTTGCGTTCAGACACTAAGGAAATCAAGTTTTCTCCAAAGACTGAGGCAAAGGATCTCAAGATGAAAGCAGACATGGTGAAGAGACTTATGGACAAGGGTTACCGGGTGAAGTGTACTGCCTCGGATTCTGAAGGTCGGGACTTGAGAGCAGTTTTCTCTGGTCTCATTGCGCTGATAGAAGAGACAGCTTATATTGAATGTGATCCTACGGTAGGAAAAGGAAAAGAATCGTTTATAATGGTCAGGCATGTGAAGTTCGGCCCACCAAAGTCTGGTGCGAAAAAAAAGGCTGAAGACAAAGAGGGCACTGAGAAAGGTAGTAGTGGTAATGGTACTGGGGTTACTACAACAACAGCAGACACAGATCCACTCCCTCCACAAGGATCTTCCGGTCTGGCCCACGCTCCCTATCAAAGTAGAGAGATCCCAGTTCCACATTCGTCACCATCTATGAGAGAGCAGCATATTCCTCACGGTGAAACTCACAGAGCTCCTCCATCGGCATTTAGAAACTCTGCTCCTCTTCCTAACGGTGTTCCCAAGCAAGAACCAATAAACATGCACTTCCCATCTCCTGGGAGAGAAACCCACAGAGCTCCTCCATCGGCATTTAGAAACTCTGCTCCTCTTCCTAACAGTGCTCCCAAGCAAGAACCATCTAATTCTATTCCTCCCCGCTCTGCGGGCAAGCAAGAACCATCTAGTCCTAATCCTCGTTCTCGTCCTCCAGGACTTGGTTATGGGATATTTAGCAACCCAACAGGTAATGGTTCTGTGAGTCAAGGGGTGTCGGAAAGGTTTCCGGCAAATCCAAACTCACTGAGTTCAAGATCTTATAGCAACCAAAGACCAGGAACAGACGTTGGTAATGATGGAAAGGGAAGATGGGGAACCTTTGGTAGAGAGAGCTCTACAGACCCTAACCAGCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

377

Amino Acids

41.09

Weight (kDa)

9.62

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_C	PF00707	12 - 55	1.8e-06	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AccB7I	CCANNNNNTGG	3 cut(s)	467, 770, 929
AccBSI	CCGCTC	2 cut(s)	163, 873
AciI	CCGC	3 cut(s)	163, 871, 878
AclWI	GGATC	5 cut(s)	255, 392, 554, 586, 613
AcuI	CTGAAG	2 cut(s)	345, 507
AfaI	GTAC	2 cut(s)	310, 529
AfiI	CCNNNNNNNGG	6 cut(s)	407, 467, 575, 770, 877, 929
AgsI	TTSAA	4 cut(s)	44, 83, 392, 1023
AjnI	CCWGG	3 cut(s)	769, 922, 1045
AluBI	AGCT	6 cut(s)	38, 64, 383, 686, 791, 1104
AluI	AGCT	6 cut(s)	38, 64, 383, 686, 791, 1104
Alw21I	GWGCWC	4 cut(s)	688, 793, 838, 1106
Alw26I	GTCTC	3 cut(s)	271, 362, 371
AlwI	GGATC	5 cut(s)	255, 392, 554, 586, 613
AoxI	GGCC	2 cut(s)	454, 591
ApeKI	GCWGC	1 cut(s)	655
Asp700I	GAANNNNTTC	2 cut(s)	39, 993
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	455, 592
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	4 cut(s)	283, 313, 630, 683
BaeGI	GKGCMC	1 cut(s)	503
BaeI	ACNNNNGTAYC	2 cut(s)	519, 552
BanII	GRGCYC	3 cut(s)	688, 793, 1106
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	4 cut(s)	688, 793, 838, 1106
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	8 cut(s)	649, 700, 772, 805, 859, 901, 1061, 1074
BciT130I	CCWGG	3 cut(s)	771, 924, 1047
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	3 cut(s)	271, 362, 371
BfaI	CTAG	1 cut(s)	897
BfmI	CTRYAG	1 cut(s)	1107
BglII	AGATCT	1 cut(s)	1025
BisI	GCNGC	1 cut(s)	656
BlsI	GCNGC	1 cut(s)	657
Bme1390I	CCNGG	4 cut(s)	299, 771, 924, 1047
BmgT120I	GGNCC	2 cut(s)	455, 592
BmiI	GGNNCC	1 cut(s)	1087
BmrFI	CCNGG	4 cut(s)	299, 771, 924, 1047
BmrI	ACTGGG	2 cut(s)	540, 617
BmuI	ACTGGG	2 cut(s)	540, 617
BpiI	GAAGAC	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	1 cut(s)	906
BpuEI	CTTGAG	3 cut(s)	80, 236, 358
BpuMI	CCSGG	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	315, 770
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	6 cut(s)	407, 467, 575, 770, 877, 929
Bse1I	ACTGG	2 cut(s)	535, 623
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	3 cut(s)	771, 924, 1047
BseDI	CCNNGG	2 cut(s)	315, 770
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	6 cut(s)	407, 467, 575, 770, 877, 929
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	3 cut(s)	228, 495, 1007
BseNI	ACTGG	2 cut(s)	535, 623
BseRI	GAGGAG	4 cut(s)	678, 705, 783, 810
BseSI	GKGCMC	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	2 cut(s)	456, 593
BsiHKAI	GWGCWC	4 cut(s)	688, 793, 838, 1106
BsiSI	CCGG	3 cut(s)	298, 585, 998
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	6 cut(s)	407, 467, 575, 770, 877, 929
BsmAI	GTCTC	3 cut(s)	271, 362, 371
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	456, 593
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	5 cut(s)	503, 688, 793, 838, 1106
Bsp143I	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
BspACI	CCGC	3 cut(s)	163, 871, 878
BspANI	GGCC	2 cut(s)	456, 593
BspCNI	CTCAG	3 cut(s)	229, 496, 1008
BspLI	GGNNCC	1 cut(s)	1087
BspPI	GGATC	5 cut(s)	255, 392, 554, 586, 613
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	2 cut(s)	163, 873
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	535, 623
BssECI	CCNNGG	2 cut(s)	315, 770
BssMI	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
Bst2UI	CCWGG	3 cut(s)	771, 924, 1047
Bst4CI	ACNGT	4 cut(s)	406, 671, 728, 833
Bst6I	CTCTTC	5 cut(s)	45, 269, 369, 723, 828
BstC8I	GCNNGC	2 cut(s)	880, 884
BstDEI	CTNAG	5 cut(s)	180, 210, 237, 504, 1016
BstEII	GGTNACC	1 cut(s)	293
BstENI	CCTNNNNNAGG	2 cut(s)	405, 573
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	6 cut(s)	250, 400, 562, 581, 621, 1028
BstMAI	GTCTC	3 cut(s)	271, 362, 371
BstMBI	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
BstMWI	GCNNNNNNNGC	1 cut(s)	879
BstNI	CCWGG	3 cut(s)	771, 924, 1047
BstNSI	RCATGY	2 cut(s)	446, 757
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	297, 769, 922, 1045
BstSFI	CTRYAG	1 cut(s)	1107
BstSLI	GKGCMC	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	5 cut(s)	247, 559, 578, 618, 1025
BstYI	RGATCY	5 cut(s)	247, 559, 578, 618, 1025
BsuRI	GGCC	2 cut(s)	456, 593
BtsIMutI	CAGTG	3 cut(s)	501, 838, 1013
Cac8I	GCNNGC	2 cut(s)	880, 884
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	455, 592
Csp6I	GTAC	2 cut(s)	309, 528
CviAII	CATG	4 cut(s)	115, 268, 443, 754
CviQI	GTAC	2 cut(s)	309, 528
DdeI	CTNAG	5 cut(s)	180, 210, 237, 504, 1016
DpnI	GATC	6 cut(s)	249, 399, 561, 580, 620, 1027
DpnII	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
Eam1104I	CTCTTC	5 cut(s)	45, 269, 369, 723, 828
EarI	CTCTTC	5 cut(s)	45, 269, 369, 723, 828
Ecl136II	GAGCTC	3 cut(s)	686, 791, 1104
Eco24I	GRGCYC	3 cut(s)	688, 793, 1106
Eco31I	GGTCTC	1 cut(s)	362
Eco53kI	GAGCTC	3 cut(s)	686, 791, 1104
Eco57I	CTGAAG	2 cut(s)	345, 507
Eco91I	GGTNACC	1 cut(s)	293
EcoICRI	GAGCTC	3 cut(s)	686, 791, 1104
EcoNI	CCTNNNNNAGG	2 cut(s)	405, 573
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	3 cut(s)	769, 922, 1045
EcoT38I	GRGCYC	3 cut(s)	688, 793, 1106
FaeI	CATG	4 cut(s)	118, 271, 446, 757
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	114, 267, 442, 753
FauI	CCCGC	2 cut(s)	871, 878
Fnu4HI	GCNGC	1 cut(s)	656
FriOI	GRGCYC	3 cut(s)	688, 793, 1106
Fsp4HI	GCNGC	1 cut(s)	656
FspBI	CTAG	1 cut(s)	897
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	2 cut(s)	456, 593
HapII	CCGG	3 cut(s)	298, 585, 998
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	4 cut(s)	118, 271, 446, 757
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	4 cut(s)	55, 320, 422, 973
HpaII	CCGG	3 cut(s)	298, 585, 998
HphI	GGTGA	4 cut(s)	283, 313, 630, 683
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	4 cut(s)	205, 319, 325, 988
Hpy188III	TCNNGA	4 cut(s)	59, 253, 332, 1023
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	4 cut(s)	406, 671, 728, 833
HpyCH4IV	ACGT	2 cut(s)	46, 1056
HpyCH4V	TGCA	3 cut(s)	8, 50, 757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	879
HpyF3I	CTNAG	5 cut(s)	180, 210, 237, 504, 1016
HpySE526I	ACGT	2 cut(s)	46, 1056
Hsp92II	CATG	4 cut(s)	118, 271, 446, 757
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	6 cut(s)	604, 691, 718, 796, 823, 841
Lsp1109I	GCAGC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	897
MaeII	ACGT	2 cut(s)	46, 1056
MaeIII	GTNAC	3 cut(s)	293, 535, 636
MalI	GATC	6 cut(s)	249, 399, 561, 580, 620, 1027
MbiI	CCGCTC	2 cut(s)	163, 873
MboI	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
MboII	GAAGA	8 cut(s)	32, 286, 386, 500, 573, 710, 815, 1089
MflI	RGATCY	5 cut(s)	247, 559, 578, 618, 1025
MhlI	GDGCHC	5 cut(s)	503, 688, 793, 838, 1106
MluCI	AATT	1 cut(s)	856
MlyI	GAGTC	1 cut(s)	982
MmeI	TCCRAC	1 cut(s)	966
MroXI	GAANNNNTTC	2 cut(s)	39, 993
MseI	TTAA	2 cut(s)	168, 189
MspI	CCGG	3 cut(s)	298, 585, 998
MspR9I	CCNGG	4 cut(s)	299, 771, 924, 1047
MvaI	CCWGG	3 cut(s)	771, 924, 1047
MwoI	GCNNNNNNNGC	1 cut(s)	879
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
NlaIII	CATG	4 cut(s)	118, 271, 446, 757
NlaIV	GGNNCC	1 cut(s)	1087
NmuCI	GTSAC	1 cut(s)	636
NspI	RCATGY	2 cut(s)	446, 757
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	2 cut(s)	39, 993
PfeI	GAWTC	3 cut(s)	55, 320, 422
PflMI	CCANNNNNTGG	3 cut(s)	467, 770, 929
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	1 cut(s)	657
PleI	GAGTC	1 cut(s)	981
PpsI	GAGTC	1 cut(s)	981
PsiI	TTATAA	1 cut(s)	431
Psp124BI	GAGCTC	3 cut(s)	688, 793, 1106
Psp6I	CCWGG	3 cut(s)	769, 922, 1045
PspEI	GGTNACC	1 cut(s)	293
PspGI	CCWGG	3 cut(s)	769, 922, 1045
PspN4I	GGNNCC	1 cut(s)	1087
PspPI	GGNCC	2 cut(s)	455, 592
PsuI	RGATCY	5 cut(s)	247, 559, 578, 618, 1025
RsaI	GTAC	2 cut(s)	310, 529
RsaNI	GTAC	2 cut(s)	309, 528
SacI	GAGCTC	3 cut(s)	688, 793, 1106
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	168, 189
SatI	GCNGC	1 cut(s)	656
Sau3AI	GATC	6 cut(s)	247, 397, 559, 578, 618, 1025
Sau96I	GGNCC	2 cut(s)	455, 592
SchI	GAGTC	1 cut(s)	982
ScrFI	CCNGG	4 cut(s)	299, 771, 924, 1047
SduI	GDGCHC	5 cut(s)	503, 688, 793, 838, 1106
SfcI	CTRYAG	1 cut(s)	1107
SmlI	CTYRAG	3 cut(s)	59, 251, 337
SmoI	CTYRAG	3 cut(s)	59, 251, 337
Sse9I	AATT	1 cut(s)	856
SsiI	CCGC	3 cut(s)	163, 871, 878
SspMI	CTAG	1 cut(s)	897
SstI	GAGCTC	3 cut(s)	688, 793, 1106
StyD4I	CCNGG	4 cut(s)	297, 769, 922, 1045
TaaI	ACNGT	4 cut(s)	406, 671, 728, 833
TaiI	ACGT	2 cut(s)	49, 1059
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	856
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	3 cut(s)	55, 320, 422
Tru1I	TTAA	2 cut(s)	168, 189
Tru9I	TTAA	2 cut(s)	168, 189
TscAI	CASTG	3 cut(s)	508, 838, 1020
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	3 cut(s)	508, 838, 1020
Van91I	CCANNNNNTGG	3 cut(s)	467, 770, 929
XagI	CCTNNNNNAGG	2 cut(s)	405, 573
XceI	RCATGY	2 cut(s)	446, 757
XmnI	GAANNNNTTC	2 cut(s)	39, 993
XspI	CTAG	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.