Prupe.8G167900_v2.0.a1

Translation initiation factor IF-3, N-terminal domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
17339602 .. 17345791
6190 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G167900.5

Sequence Viewer

Length: 1356 bp
ATGGCATTTTGGGGAAGAATCAGCCAGTCTAAGCTAAGGCAGTTGTCCCATCATTCCAAGACTATTCCTTATGCTGCTCTGCTCAACCCCACGGTTTCACATTCGAAAGCATGTGTTTCAGAAAATCCATATTTGATCTCTCACCGCGGACCAACAGATTTTGGCAGTAAAGTTAGATTCTTTGCTGCTCCATTCAAGGGAAGTAGAAAGAAGATAGAGAAGGCCGCGAGTGTTCCACGATTGAATGAGAAGATTGAAGCTGAGTTTGTTAGACTTGTGATGGACGAAGGGCATTGTATTGTCTCAAGGAGTGAAGCTCTGGAACGCGCAAGGAAACTCGAGCTTGATTTAGTTGAGGTTGAATGCTCGAGTAATCCTCCTGTTGTTAAAATCATGGATTTCCATAAAGAGAAGTACAAAAGAGTAGTAAGGGAGAAAGAGCGGAAAATAAAGTCTGACAAGACCTTGCGATCAGAGTCTAAGGAAGTTAAATTCTCTCCAAAAACTGAAGCAAAGGACCTAAGGATGAAAGCAGATATGGTGAAGAGATTTATGGAGAAAGGTTACCGAGTGAAGTGTACTGCCACGGATGCTGAGGATAAGAACTTGGAAGCATTGTTTGCTCCTCTCACTGTGTTGATAGAAGATGTAGCTCTTGTTGACTGGGAGCCGACGCGGGGAAAAGGAAAAGAGGCATTTATAATCGTCAGGCATAGGAAGTTTGGCCCATCAAAGGGGGCTGGAAAGAAAACGAAGACTGAAGAAAAAACTACCACTGATGTTCAAATGAAGGGTAGTGATGATGCAAATGCTACTACTTCACAGCGTGATATTCGGATAAATACAGTGCCTCAAAAAGCTTCATCGCAGTCGGATATTAGTGATTCAGGCTTATTGCATGCCACACCTACCAGAGCACACACGGTTCCACTGCCACCGCGAGAATCTTTGGACGGGACCCAAAATAGGTACAGAAACGATCCAAGGAATCCTTTTCCACCAAGAGGAATGGATAATAGGCGCCCTGGAATGAGAGAACCGAGGCAAGCTCAGACCAATGCACCTGTATTTAGAAACTCGACGCCTCCTCCTAATGATATCCCCAAGCAAGAACCATCGAGTCCTAGTGCTCCCCGTACTACGGGACCTGGTTATGGGATCTTTAGCAATCAAAAAGGTAATGCTCCTCCTAGACATGGTGTAACGGACAGGGTCCCAGCAAATTCAAACTCACCCAGTTCAAGACCTGATAGTAGCCAAAGACCAGGCGCAGGCATTGATAAGGTTGGCGGATTCGGGATCTTCAGTAGAGAAAGCTCTGGTGAGAGCCCAAACAGGACATTTAAACCGAACTAA

Protein Analysis

452

Amino Acids

50.25

Weight (kDa)

9.95

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AccB1I GGYRCC 1 cut(s) 1020
AccBSI CCGCTC 1 cut(s) 442
AccII CGCG 5 cut(s) 147, 227, 327, 676, 940
AciI CCGC 7 cut(s) 145, 147, 225, 442, 676, 938, 1290
AclWI GGATC 3 cut(s) 974, 1166, 1307
AcsI RAATTY 2 cut(s) 491, 1222
AcuI CTGAAG 3 cut(s) 528, 780, 1288
AcyI GRCGYC 2 cut(s) 1021, 1082
AdeI CACNNNGTG 1 cut(s) 827
AfaI GTAC 4 cut(s) 416, 580, 971, 1138
AgsI TTSAA 7 cut(s) 196, 244, 257, 362, 785, 1227, 1242
AjnI CCWGG 3 cut(s) 1024, 1147, 1264
AluBI AGCT 8 cut(s) 34, 260, 317, 343, 653, 860, 1049, 1317
AluI AGCT 8 cut(s) 34, 260, 317, 343, 653, 860, 1049, 1317
Alw21I GWGCWC 2 cut(s) 919, 1132
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 3 cut(s) 974, 1166, 1307
Ama87I CYCGRG 2 cut(s) 338, 367
AoxI GGCC 2 cut(s) 222, 724
ApeKI GCWGC 2 cut(s) 74, 185
ApoI RAATTY 2 cut(s) 491, 1222
AspLEI GCGC 3 cut(s) 329, 1023, 1271
AspS9I GGNCC 6 cut(s) 149, 517, 725, 957, 1145, 1213
AsuHPI GGTGA 4 cut(s) 134, 553, 1224, 1334
AsuII TTCGAA 1 cut(s) 104
AvaI CYCGRG 2 cut(s) 338, 367
AvaII GGWCC 5 cut(s) 149, 517, 957, 1145, 1213
AxyI CCTNAGG 1 cut(s) 521
BanI GGYRCC 1 cut(s) 1020
BanII GRGCYC 1 cut(s) 1331
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 2 cut(s) 919, 1132
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 61, 172
BccI CCATC 4 cut(s) 57, 274, 736, 1123
BciT130I CCWGG 3 cut(s) 1026, 1149, 1266
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 2 cut(s) 1125, 1191
BfoI RGCGCY 1 cut(s) 1024
BisI GCNGC 3 cut(s) 75, 186, 225
BlsI GCNGC 3 cut(s) 76, 187, 226
Bme1390I CCNGG 3 cut(s) 1026, 1149, 1266
Bme18I GGWCC 5 cut(s) 149, 517, 957, 1145, 1213
BmeT110I CYCGRG 2 cut(s) 338, 367
BmgT120I GGNCC 6 cut(s) 149, 517, 725, 957, 1145, 1213
BmiI GGNNCC 8 cut(s) 669, 927, 958, 959, 1022, 1146, 1214, 1215
BmrFI CCNGG 3 cut(s) 1026, 1149, 1266
BmrI ACTGGG 2 cut(s) 673, 1230
BmsI GCATC 2 cut(s) 580, 793
BmuI ACTGGG 2 cut(s) 673, 1230
BpiI GAAGAC 1 cut(s) 761
BplI GAGNNNNNCTC 6 cut(s) 301, 333, 361, 393, 1033, 1065
Bpu10I CCTNAGC 2 cut(s) 35, 594
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 289
BsaHI GRCGYC 2 cut(s) 1021, 1082
BsaJI CCNNGG 6 cut(s) 90, 145, 585, 983, 1024, 1040
BsaXI ACNNNNNCTCC 2 cut(s) 1072, 1102
Bse1I ACTGG 3 cut(s) 25, 668, 1236
Bse21I CCTNAGG 1 cut(s) 521
BseBI CCWGG 3 cut(s) 1026, 1149, 1266
BseDI CCNNGG 6 cut(s) 90, 145, 585, 983, 1024, 1040
BseGI GGATG 2 cut(s) 531, 595
BseMII CTCAG 3 cut(s) 252, 585, 1064
BseNI ACTGG 3 cut(s) 25, 668, 1236
BseRI GAGGAG 3 cut(s) 615, 1077, 1176
BseXI GCAGC 2 cut(s) 61, 172
BseYI CCCAGC 1 cut(s) 1216
Bsh1236I CGCG 5 cut(s) 147, 227, 327, 676, 940
BshFI GGCC 2 cut(s) 224, 726
BshNI GGYRCC 1 cut(s) 1020
BsiHKAI GWGCWC 2 cut(s) 919, 1132
BsiHKCI CYCGRG 2 cut(s) 338, 367
BslFI GGGAC 4 cut(s) 31, 970, 1158, 1199
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 4 cut(s) 31, 970, 1158, 1199
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 2 cut(s) 224, 726
BsoBI CYCGRG 2 cut(s) 338, 367
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 919, 1132, 1331
Bsp143I GATC 5 cut(s) 135, 470, 979, 1158, 1299
BspACI CCGC 7 cut(s) 145, 147, 225, 442, 676, 938, 1290
BspANI GGCC 2 cut(s) 224, 726
BspCNI CTCAG 3 cut(s) 253, 586, 1063
BspFNI CGCG 5 cut(s) 147, 227, 327, 676, 940
BspLI GGNNCC 8 cut(s) 669, 927, 958, 959, 1022, 1146, 1214, 1215
BspPI GGATC 3 cut(s) 974, 1166, 1307
BspT104I TTCGAA 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 1020
BsrBI CCGCTC 1 cut(s) 442
BsrI ACTGG 3 cut(s) 25, 668, 1236
BssECI CCNNGG 6 cut(s) 90, 145, 585, 983, 1024, 1040
BssMI GATC 5 cut(s) 135, 470, 979, 1158, 1299
BssNI GRCGYC 2 cut(s) 1021, 1082
BssT1I CCWWGG 1 cut(s) 983
Bst2UI CCWGG 3 cut(s) 1026, 1149, 1266
Bst4CI ACNGT 4 cut(s) 94, 634, 847, 925
Bst6I CTCTTC 1 cut(s) 539
BstACI GRCGYC 2 cut(s) 1021, 1082
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 900, 1047, 1273
BstDEI CTNAG 7 cut(s) 30, 35, 261, 480, 521, 594, 1050
BstDSI CCRYGG 3 cut(s) 90, 145, 585
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 2 cut(s) 531, 595
BstFNI CGCG 5 cut(s) 147, 227, 327, 676, 940
BstH2I RGCGCY 1 cut(s) 1024
BstHHI GCGC 3 cut(s) 329, 1023, 1271
BstKTI GATC 5 cut(s) 138, 473, 982, 1161, 1302
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 5 cut(s) 135, 470, 979, 1158, 1299
BstMWI GCNNNNNNNGC 2 cut(s) 590, 620
BstNI CCWGG 3 cut(s) 1026, 1149, 1266
BstNSI RCATGY 2 cut(s) 114, 902
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 3 cut(s) 1024, 1147, 1264
BstUI CGCG 5 cut(s) 147, 227, 327, 676, 940
BstV1I GCAGC 2 cut(s) 61, 172
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 2 cut(s) 1158, 1299
BstYI RGATCY 2 cut(s) 1158, 1299
Bsu36I CCTNAGG 1 cut(s) 521
BsuRI GGCC 2 cut(s) 224, 726
BtgI CCRYGG 3 cut(s) 90, 145, 585
BtgZI GCGATG 1 cut(s) 849
BtsCI GGATG 2 cut(s) 531, 595
BtsI GCAGTG 1 cut(s) 929
BtsIMutI CAGTG 4 cut(s) 630, 774, 852, 929
Cac8I GCNNGC 3 cut(s) 900, 1047, 1273
CfoI GCGC 3 cut(s) 329, 1023, 1271
Cfr13I GGNCC 6 cut(s) 149, 517, 725, 957, 1145, 1213
Cfr42I CCGCGG 1 cut(s) 148
CseI GACGC 2 cut(s) 682, 1090
CsiI ACCWGGT 1 cut(s) 1147
Csp6I GTAC 4 cut(s) 415, 579, 970, 1137
CviAII CATG 4 cut(s) 111, 394, 899, 1196
CviQI GTAC 4 cut(s) 415, 579, 970, 1137
DdeI CTNAG 7 cut(s) 30, 35, 261, 480, 521, 594, 1050
DinI GGCGCC 1 cut(s) 1022
DpnI GATC 5 cut(s) 137, 472, 981, 1160, 1301
DpnII GATC 5 cut(s) 135, 470, 979, 1158, 1299
DraI TTTAAA 1 cut(s) 1345
DraIII CACNNNGTG 1 cut(s) 827
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
EciI GGCGGA 1 cut(s) 1305
Eco130I CCWWGG 1 cut(s) 983
Eco24I GRGCYC 1 cut(s) 1331
Eco32I GATATC 1 cut(s) 1099
Eco47I GGWCC 5 cut(s) 149, 517, 957, 1145, 1213
Eco57I CTGAAG 3 cut(s) 528, 780, 1288
Eco81I CCTNAGG 1 cut(s) 521
Eco88I CYCGRG 2 cut(s) 338, 367
Eco91I GGTNACC 1 cut(s) 563
EcoO109I RGGNCCY 4 cut(s) 517, 957, 1145, 1213
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 3 cut(s) 1024, 1147, 1264
EcoRV GATATC 1 cut(s) 1099
EcoT14I CCWWGG 1 cut(s) 983
EcoT38I GRGCYC 1 cut(s) 1331
EgeI GGCGCC 1 cut(s) 1022
EheI GGCGCC 1 cut(s) 1022
ErhI CCWWGG 1 cut(s) 983
FaeI CATG 4 cut(s) 114, 397, 902, 1199
FalI AAGNNNNNCTT 2 cut(s) 976, 1008
FaqI GGGAC 4 cut(s) 31, 970, 1158, 1199
FatI CATG 4 cut(s) 110, 393, 898, 1195
FauI CCCGC 1 cut(s) 669
Fnu4HI GCNGC 3 cut(s) 75, 186, 225
FokI GGATG 2 cut(s) 538, 602
FriOI GRGCYC 1 cut(s) 1331
Fsp4HI GCNGC 3 cut(s) 75, 186, 225
FspBI CTAG 2 cut(s) 1125, 1191
GlaI GCGC 3 cut(s) 328, 1022, 1270
GluI GCNGC 3 cut(s) 75, 186, 225
GsaI CCCAGC 1 cut(s) 1220
HaeII RGCGCY 1 cut(s) 1024
HaeIII GGCC 2 cut(s) 224, 726
HgaI GACGC 2 cut(s) 682, 1090
HhaI GCGC 3 cut(s) 329, 1023, 1271
Hin1I GRCGYC 2 cut(s) 1021, 1082
Hin1II CATG 4 cut(s) 114, 397, 902, 1199
Hin6I GCGC 3 cut(s) 327, 1021, 1269
HinP1I GCGC 3 cut(s) 327, 1021, 1269
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 8 cut(s) 18, 177, 476, 884, 944, 988, 1120, 1293
HphI GGTGA 4 cut(s) 134, 553, 1224, 1334
Hpy166II GTNNAC 2 cut(s) 579, 661
Hpy188I TCNGA 6 cut(s) 121, 457, 475, 837, 874, 1053
Hpy188III TCNNGA 3 cut(s) 320, 1242, 1297
Hpy8I GTNNAC 2 cut(s) 579, 661
Hpy99I CGWCG 2 cut(s) 676, 1084
HpyAV CCTTC 3 cut(s) 214, 281, 784
HpyCH4III ACNGT 4 cut(s) 94, 634, 847, 925
HpyCH4V TGCA 3 cut(s) 806, 898, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 620
HpyF3I CTNAG 7 cut(s) 30, 35, 261, 480, 521, 594, 1050
Hsp92I GRCGYC 2 cut(s) 1021, 1082
Hsp92II CATG 4 cut(s) 114, 397, 902, 1199
HspAI GCGC 3 cut(s) 327, 1021, 1269
KasI GGCGCC 1 cut(s) 1020
KflI GGGWCCC 2 cut(s) 957, 1213
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 5 cut(s) 135, 470, 979, 1158, 1299
LmnI GCTCC 5 cut(s) 193, 628, 667, 1135, 1189
Lsp1109I GCAGC 2 cut(s) 61, 172
LweI GCATC 2 cut(s) 580, 793
MabI ACCWGGT 1 cut(s) 1147
MaeI CTAG 2 cut(s) 1125, 1191
MaeIII GTNAC 2 cut(s) 563, 1201
MalI GATC 5 cut(s) 137, 472, 981, 1160, 1301
MbiI CCGCTC 1 cut(s) 442
MboI GATC 5 cut(s) 135, 470, 979, 1158, 1299
MboII GAAGA 8 cut(s) 27, 223, 262, 556, 656, 766, 773, 1294
MflI RGATCY 2 cut(s) 1158, 1299
MhlI GDGCHC 3 cut(s) 919, 1132, 1331
MluCI AATT 2 cut(s) 491, 1222
Mly113I GGCGCC 1 cut(s) 1021
MlyI GAGTC 2 cut(s) 485, 1129
MmeI TCCRAC 1 cut(s) 852
MseI TTAA 3 cut(s) 387, 489, 1344
MspA1I CMGCKG 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 1026, 1149, 1266
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 3 cut(s) 1026, 1149, 1266
MvnI CGCG 5 cut(s) 147, 227, 327, 676, 940
MwoI GCNNNNNNNGC 2 cut(s) 590, 620
NarI GGCGCC 1 cut(s) 1021
NdeII GATC 5 cut(s) 135, 470, 979, 1158, 1299
NlaIII CATG 4 cut(s) 114, 397, 902, 1199
NlaIV GGNNCC 8 cut(s) 669, 927, 958, 959, 1022, 1146, 1214, 1215
NspI RCATGY 2 cut(s) 114, 902
NspV TTCGAA 1 cut(s) 104
PaeI GCATGC 1 cut(s) 902
PaeR7I CTCGAG 2 cut(s) 338, 367
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 6 cut(s) 18, 177, 884, 944, 988, 1293
PflFI GACNNNGTC 1 cut(s) 1211
PkrI GCNGC 3 cut(s) 76, 187, 226
PleI GAGTC 2 cut(s) 484, 1128
PluTI GGCGCC 1 cut(s) 1024
PpsI GAGTC 2 cut(s) 484, 1128
PpuMI RGGWCCY 4 cut(s) 517, 957, 1145, 1213
PsiI TTATAA 1 cut(s) 701
Psp5II RGGWCCY 4 cut(s) 517, 957, 1145, 1213
Psp6I CCWGG 3 cut(s) 1024, 1147, 1264
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 1 cut(s) 1216
PspGI CCWGG 3 cut(s) 1024, 1147, 1264
PspN4I GGNNCC 8 cut(s) 669, 927, 958, 959, 1022, 1146, 1214, 1215
PspPI GGNCC 6 cut(s) 149, 517, 725, 957, 1145, 1213
PspPPI RGGWCCY 4 cut(s) 517, 957, 1145, 1213
PspXI VCTCGAGB 2 cut(s) 338, 367
PsuI RGATCY 2 cut(s) 1158, 1299
PsyI GACNNNGTC 1 cut(s) 1211
RsaI GTAC 4 cut(s) 416, 580, 971, 1138
RsaNI GTAC 4 cut(s) 415, 579, 970, 1137
SacII CCGCGG 1 cut(s) 148
SaqAI TTAA 3 cut(s) 387, 489, 1344
SatI GCNGC 3 cut(s) 75, 186, 225
Sau3AI GATC 5 cut(s) 135, 470, 979, 1158, 1299
Sau96I GGNCC 6 cut(s) 149, 517, 725, 957, 1145, 1213
SchI GAGTC 2 cut(s) 485, 1129
ScrFI CCNGG 3 cut(s) 1026, 1149, 1266
SduI GDGCHC 3 cut(s) 919, 1132, 1331
SexAI ACCWGGT 1 cut(s) 1147
SfaNI GCATC 2 cut(s) 580, 793
SfoI GGCGCC 1 cut(s) 1022
Sfr274I CTCGAG 2 cut(s) 338, 367
Sfr303I CCGCGG 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 104
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 5 cut(s) 149, 517, 957, 1145, 1213
SlaI CTCGAG 2 cut(s) 338, 367
SmlI CTYRAG 3 cut(s) 304, 338, 367
SmoI CTYRAG 3 cut(s) 304, 338, 367
SphI GCATGC 1 cut(s) 902
Sse9I AATT 2 cut(s) 491, 1222
SsiI CCGC 7 cut(s) 145, 147, 225, 442, 676, 938, 1290
SspDI GGCGCC 1 cut(s) 1020
SspMI CTAG 2 cut(s) 1125, 1191
StyD4I CCNGG 3 cut(s) 1024, 1147, 1264
StyI CCWWGG 1 cut(s) 983
TaaI ACNGT 4 cut(s) 94, 634, 847, 925
TaqI TCGA 5 cut(s) 104, 339, 368, 1079, 1118
TasI AATT 2 cut(s) 491, 1222
TatI WGTACW 2 cut(s) 414, 578
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 6 cut(s) 18, 177, 884, 944, 988, 1293
Tru1I TTAA 3 cut(s) 387, 489, 1344
Tru9I TTAA 3 cut(s) 387, 489, 1344
TscAI CASTG 4 cut(s) 637, 781, 852, 936
TseI GCWGC 2 cut(s) 74, 185
TspDTI ATGAA 3 cut(s) 542, 803, 852
TspGWI ACGGA 2 cut(s) 602, 1220
TspRI CASTG 4 cut(s) 637, 781, 852, 936
Tth111I GACNNNGTC 1 cut(s) 1211
VpaK11BI GGWCC 5 cut(s) 149, 517, 957, 1145, 1213
XapI RAATTY 2 cut(s) 491, 1222
XceI RCATGY 2 cut(s) 114, 902
XhoI CTCGAG 2 cut(s) 338, 367
XspI CTAG 2 cut(s) 1125, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.