AT1G34360

Translation initiation factor IF-3, C-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
12542796 .. 12546244
3449 bp
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UTR
Exon/CDS
Intron
AT1G34360.1

Sequence Viewer

Length: 1563 bp
ATGGCTATATGGCGTATAATCAATCGTTCGTATCTCAAATACGCATCAAACCAATTAACCAGAAACTACTACACTCAAGTTTGTCTTGCTTCTTCTACTCATGTCGTAAAACAGACAACAAAGTTGTCTTCTTTTGACATCCCAAATTCAGATATATGTACAAGACCTTCTAATATCTTCCAAAATCTCAGATTCCTTGCTACTTCAGCTCAGACAAGGAAGAAGGAAGCGGAAGTTGACTCTGATGGTCCACGTCTCAATGAGAAGATTACTGGCGACTATGTTAGATTGGTTTCCGAGGAAGGACACTGTGTTGTATCGTTGAGAGAAGCTCTCAGACGGGCTAAGGAGCTTCAGTGTGACTTAGTTGAGGTCCAAAGAGATGCTAAGCCACCTGTGTGTAAAATTGTGAAATACTCATTGGAGCTGTACAAAAAAGCTAAAGTAGGAAAAGAGCGTGCTAAGGCCAAGCGGGCTGAAGCTATTCGACCTGATATCAAGGAAATTCGATTTACTCCAAAAATTGAGGCCAAGGACCTAAAGTTTAAATCTGATCAAGCATTGAAGCTGATGGAAAGTGGATATCGTGTAAAGTGCCTTGCAGTGCCTGACAAGGACAAGCATAAGGAACTTGAACCAGAAAAGCTGCTTGAGTTACTATTTCGCTTCACTTGTTTTATTGGGGATGCACTTGTGGAATCTTGGCCTGAGGCGGATAGAAAAGGCGCAGTTGTTATAGTTAGACACGCCAAGTTTGGTCCACCCAAGAAAGGAGGGGTGAAATTAATGAAGGATATTGACATAAAATCTGCAAGAGTGAAAGAAGAATCACCAAAGCCTGATAGCTCGAAGGCGGGAGTGGCTACTGTTGATGATCAGGAAGATATAGAGAAGTCTGAACCTAGGTTCAGTGTTGAGCAGGCTCAACCAGTTAAATTCCAGAACGCATACGCAAAAAGAGAACCTAGCAGTGAGTTTTCAGGAGGTAGAGATGCAAGCCGGTTTGAACCTCAGTCTCCAAACCAGCATGTAAACCCACAACGTCCTCGGTTCTCAAACCAAGCTCCAAACCAACAACCTACCGGGCGGTTTGATCCTCAGTCACCAAATCAGCCTCCAAGTGCACCAAGGCCTCAGTTCCCAAACCAACAACCTACAGGGCGGTTTGATCCTCAGTTTCCAAGCCAGCCTCCAAGGCCTCAGTTCCCAAACCAAGCTCCAAACCAACAATCTACAGGGCGGTTTAATCCTCAGTTTCCAAACCAGCGTCCAAGTCCACCACAGTCTCGGTTCCCAGACCAAGCTCCAAATCAGCAACCCTCTGGGCCATCTCCAAATCGCCACCCAGACCGGCAAGGTCCTCCACCTCGATTTCAAAACCAAGCTCCGAATCAACAACCTACCGGCCGGTTTGAACCTCAACCACCAAACCCGCCCCGAGCTCCACCACGACCACAAACCCGGTTGCCAAACGAAACTTCAAACGAACAACCTACGGCCCCTGGAAGGTCTAGTGGCCCGGCTTCAGGTTATGGAATTTTCAGCACCCCAAAAACGAAGTAA

Protein Analysis

520

Amino Acids

58.58

Weight (kDa)

9.79

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF3_N PF05198 86 - 152 2.3e-19 Translation initiation factor IF-3, N-terminal domain
IF3_C PF00707 165 - 199 6.3e-06 Translation initiation factor IF-3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 230, 472, 713, 854, 1087, 1162, 1240, 1433
AclWI GGATC 2 cut(s) 1088, 1163
AcoI YGGCCR 1 cut(s) 1405
AcsI RAATTY 4 cut(s) 145, 504, 935, 1536
AcuI CTGAAG 4 cut(s) 189, 338, 498, 1509
AfaI GTAC 2 cut(s) 160, 431
AfiI CCNNNNNNNGG 3 cut(s) 770, 1506, 1526
AgsI TTSAA 6 cut(s) 565, 635, 1007, 1376, 1415, 1482
AjiI CACGTC 1 cut(s) 254
AjnI CCWGG 1 cut(s) 1501
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 1462, 1494
AleI CACNNNNGTG 1 cut(s) 397
Alw21I GWGCWC 2 cut(s) 1126, 1444
Alw26I GTCTC 3 cut(s) 260, 1020, 1290
Alw44I GTGCAC 1 cut(s) 1122
AlwI GGATC 2 cut(s) 1088, 1163
AlwNI CAGNNNCTG 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 1437
AoxI GGCC 9 cut(s) 465, 528, 704, 1130, 1196, 1325, 1405, 1497, 1516
ApaLI GTGCAC 1 cut(s) 1122
ApeKI GCWGC 1 cut(s) 646
ApoI RAATTY 4 cut(s) 145, 504, 935, 1536
AseI ATTAAT 1 cut(s) 785
Asp700I GAANNNNTTC 1 cut(s) 483
AspA2I CCTAGG 1 cut(s) 902
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 8 cut(s) 248, 373, 535, 758, 1325, 1358, 1498, 1517
AsuC2I CCSGG 3 cut(s) 1084, 1462, 1520
AsuHPI GGTGA 3 cut(s) 790, 822, 1095
AvaI CYCGRG 1 cut(s) 1437
AvaII GGWCC 5 cut(s) 248, 373, 535, 758, 1358
AvrII CCTAGG 1 cut(s) 902
AxyI CCTNAGG 1 cut(s) 708
BaeGI GKGCMC 1 cut(s) 1126
BanII GRGCYC 1 cut(s) 1444
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 1126, 1444
BbvI GCAGC 1 cut(s) 633
BccI CCATC 3 cut(s) 239, 565, 1336
BceAI ACGGC 1 cut(s) 1512
BciT130I CCWGG 1 cut(s) 1503
BclI TGATCA 2 cut(s) 553, 874
BcnI CCSGG 3 cut(s) 1084, 1462, 1520
BcoDI GTCTC 3 cut(s) 260, 1020, 1290
BfaI CTAG 3 cut(s) 903, 966, 1512
BfmI CTRYAG 2 cut(s) 1155, 1233
BglI GCCNNNNNGGC 2 cut(s) 473, 1195
BisI GCNGC 1 cut(s) 647
BlnI CCTAGG 1 cut(s) 902
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 648
Bme1390I CCNGG 4 cut(s) 1084, 1462, 1503, 1520
Bme18I GGWCC 5 cut(s) 248, 373, 535, 758, 1358
BmeT110I CYCGRG 1 cut(s) 1437
BmgBI CACGTC 1 cut(s) 254
BmgT120I GGNCC 8 cut(s) 248, 373, 535, 758, 1325, 1358, 1498, 1517
BmiI GGNNCC 2 cut(s) 1292, 1500
BmrFI CCNGG 4 cut(s) 1084, 1462, 1503, 1520
BmsI GCATC 4 cut(s) 53, 373, 676, 982
BpiI GAAGAC 1 cut(s) 120
BplI GAGNNNNNCTC 4 cut(s) 316, 348, 318, 350
Bpu10I CCTNAGC 2 cut(s) 345, 462
Bpu1102I GCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 60, 671
BpuMI CCSGG 3 cut(s) 1084, 1462, 1520
BsaJI CCNNGG 7 cut(s) 297, 531, 902, 1046, 1127, 1193, 1501
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 770, 1506, 1526
Bse118I RCCGGY 4 cut(s) 999, 1350, 1403, 1407
Bse1I ACTGG 2 cut(s) 277, 929
Bse21I CCTNAGG 1 cut(s) 708
BseBI CCWGG 1 cut(s) 1503
BseDI CCNNGG 7 cut(s) 297, 531, 902, 1046, 1127, 1193, 1501
BseGI GGATG 2 cut(s) 138, 691
BseLI CCNNNNNNNGG 3 cut(s) 770, 1506, 1526
BseNI ACTGG 2 cut(s) 277, 929
BseSI GKGCMC 1 cut(s) 1126
BseX3I CGGCCG 1 cut(s) 1405
BseXI GCAGC 1 cut(s) 633
Bsh1285I CGRYCG 1 cut(s) 1408
BshFI GGCC 9 cut(s) 467, 530, 706, 1132, 1198, 1327, 1407, 1499, 1518
BsiEI CGRYCG 1 cut(s) 1408
BsiHKAI GWGCWC 2 cut(s) 1126, 1444
BsiHKCI CYCGRG 1 cut(s) 1437
BsiSI CCGG 7 cut(s) 1000, 1083, 1351, 1404, 1408, 1462, 1520
BslI CCNNNNNNNGG 3 cut(s) 770, 1506, 1526
BsmAI GTCTC 3 cut(s) 260, 1020, 1290
BsmBI CGTCTC 1 cut(s) 260
BsnI GGCC 9 cut(s) 467, 530, 706, 1132, 1198, 1327, 1407, 1499, 1518
BsoBI CYCGRG 1 cut(s) 1437
Bsp1286I GDGCHC 2 cut(s) 1126, 1444
Bsp1407I TGTACA 2 cut(s) 158, 429
Bsp143I GATC 4 cut(s) 553, 874, 1093, 1168
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 8 cut(s) 230, 472, 713, 854, 1087, 1162, 1240, 1433
BspANI GGCC 9 cut(s) 467, 530, 706, 1132, 1198, 1327, 1407, 1499, 1518
BspLI GGNNCC 2 cut(s) 1292, 1500
BspPI GGATC 2 cut(s) 1088, 1163
BsrFI RCCGGY 4 cut(s) 999, 1350, 1403, 1407
BsrGI TGTACA 2 cut(s) 158, 429
BsrI ACTGG 2 cut(s) 277, 929
BssAI RCCGGY 4 cut(s) 999, 1350, 1403, 1407
BssECI CCNNGG 7 cut(s) 297, 531, 902, 1046, 1127, 1193, 1501
BssMI GATC 4 cut(s) 553, 874, 1093, 1168
BssT1I CCWWGG 4 cut(s) 531, 902, 1127, 1193
Bst2UI CCWGG 1 cut(s) 1503
Bst4CI ACNGT 3 cut(s) 311, 868, 1284
BstAUI TGTACA 2 cut(s) 158, 429
BstC8I GCNNGC 5 cut(s) 459, 474, 921, 997, 1187
BstF5I GGATG 2 cut(s) 138, 691
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 4 cut(s) 556, 877, 1096, 1171
BstMAI GTCTC 3 cut(s) 260, 1020, 1290
BstMBI GATC 4 cut(s) 553, 874, 1093, 1168
BstMCI CGRYCG 1 cut(s) 1408
BstMWI GCNNNNNNNGC 4 cut(s) 206, 473, 860, 1195
BstNI CCWGG 1 cut(s) 1503
BstNSI RCATGY 1 cut(s) 1031
BstSCI CCNGG 4 cut(s) 1082, 1460, 1501, 1518
BstSFI CTRYAG 2 cut(s) 1155, 1233
BstSLI GKGCMC 1 cut(s) 1126
BstV1I GCAGC 1 cut(s) 633
BstV2I GAAGAC 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 1405
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 9 cut(s) 467, 530, 706, 1132, 1198, 1327, 1407, 1499, 1518
BtrI CACGTC 1 cut(s) 254
BtsCI GGATG 2 cut(s) 138, 691
BtsI GCAGTG 2 cut(s) 609, 976
BtsIMutI CAGTG 5 cut(s) 307, 362, 609, 916, 976
Cac8I GCNNGC 5 cut(s) 459, 474, 921, 997, 1187
CaiI CAGNNNCTG 1 cut(s) 608
CfoI GCGC 1 cut(s) 728
Cfr10I RCCGGY 4 cut(s) 999, 1350, 1403, 1407
Cfr13I GGNCC 8 cut(s) 248, 373, 535, 758, 1325, 1358, 1498, 1517
CseI GACGC 1 cut(s) 1256
Csp6I GTAC 2 cut(s) 159, 430
CviAII CATG 2 cut(s) 101, 1028
CviQI GTAC 2 cut(s) 159, 430
DpnI GATC 4 cut(s) 555, 876, 1095, 1170
DpnII GATC 4 cut(s) 553, 874, 1093, 1168
DraI TTTAAA 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 1405
EagI CGGCCG 1 cut(s) 1405
EciI GGCGGA 1 cut(s) 728
Ecl136II GAGCTC 1 cut(s) 1442
EclXI CGGCCG 1 cut(s) 1405
Eco130I CCWWGG 4 cut(s) 531, 902, 1127, 1193
Eco147I AGGCCT 2 cut(s) 1132, 1198
Eco24I GRGCYC 1 cut(s) 1444
Eco32I GATATC 2 cut(s) 496, 584
Eco47I GGWCC 5 cut(s) 248, 373, 535, 758, 1358
Eco52I CGGCCG 1 cut(s) 1405
Eco53kI GAGCTC 1 cut(s) 1442
Eco57I CTGAAG 4 cut(s) 189, 338, 498, 1509
Eco81I CCTNAGG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 1437
EcoICRI GAGCTC 1 cut(s) 1442
EcoO109I RGGNCCY 2 cut(s) 535, 1358
EcoRII CCWGG 1 cut(s) 1501
EcoRV GATATC 2 cut(s) 496, 584
EcoT14I CCWWGG 4 cut(s) 531, 902, 1127, 1193
EcoT38I GRGCYC 1 cut(s) 1444
ErhI CCWWGG 4 cut(s) 531, 902, 1127, 1193
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 2 cut(s) 104, 1031
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 2 cut(s) 100, 1027
FauI CCCGC 3 cut(s) 465, 847, 1440
FbaI TGATCA 2 cut(s) 553, 874
Fnu4HI GCNGC 1 cut(s) 647
FokI GGATG 2 cut(s) 125, 698
FriOI GRGCYC 1 cut(s) 1444
Fsp4HI GCNGC 1 cut(s) 647
FspBI CTAG 3 cut(s) 903, 966, 1512
GlaI GCGC 1 cut(s) 727
GluI GCNGC 1 cut(s) 647
HaeIII GGCC 9 cut(s) 467, 530, 706, 1132, 1198, 1327, 1407, 1499, 1518
HapII CCGG 7 cut(s) 1000, 1083, 1351, 1404, 1408, 1462, 1520
HgaI GACGC 1 cut(s) 1256
HhaI GCGC 1 cut(s) 728
Hin1II CATG 2 cut(s) 104, 1031
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 5 cut(s) 192, 239, 698, 827, 1390
HpaII CCGG 7 cut(s) 1000, 1083, 1351, 1404, 1408, 1462, 1520
HphI GGTGA 3 cut(s) 790, 822, 1095
Hpy166II GTNNAC 6 cut(s) 238, 251, 761, 1033, 1124, 1277
Hpy188I TCNGA 9 cut(s) 151, 191, 213, 244, 298, 338, 553, 898, 1389
Hpy188III TCNNGA 3 cut(s) 878, 940, 981
Hpy8I GTNNAC 6 cut(s) 238, 251, 761, 1033, 1124, 1277
HpyAV CCTTC 6 cut(s) 177, 217, 296, 784, 844, 1500
HpyCH4III ACNGT 3 cut(s) 311, 868, 1284
HpyCH4IV ACGT 2 cut(s) 253, 1042
HpyCH4V TGCA 5 cut(s) 602, 689, 812, 995, 1124
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 473, 860, 1195
HpySE526I ACGT 2 cut(s) 253, 1042
Hsp92II CATG 2 cut(s) 104, 1031
HspAI GCGC 1 cut(s) 726
Ksp22I TGATCA 2 cut(s) 553, 874
Kzo9I GATC 4 cut(s) 553, 874, 1093, 1168
LmnI GCTCC 7 cut(s) 349, 424, 1069, 1222, 1309, 1390, 1447
Lsp1109I GCAGC 1 cut(s) 633
LweI GCATC 4 cut(s) 53, 373, 676, 982
MaeI CTAG 3 cut(s) 903, 966, 1512
MaeII ACGT 2 cut(s) 253, 1042
MaeIII GTNAC 3 cut(s) 359, 654, 1101
MalI GATC 4 cut(s) 555, 876, 1095, 1170
MboI GATC 4 cut(s) 553, 874, 1093, 1168
MboII GAAGA 7 cut(s) 84, 120, 169, 232, 277, 836, 893
MhlI GDGCHC 2 cut(s) 1126, 1444
MluCI AATT 8 cut(s) 53, 145, 405, 504, 522, 782, 935, 1536
MlyI GAGTC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 5 cut(s) 56, 546, 785, 933, 1245
MslI CAYNNNNRTG 1 cut(s) 397
MspI CCGG 7 cut(s) 1000, 1083, 1351, 1404, 1408, 1462, 1520
MspR9I CCNGG 4 cut(s) 1084, 1462, 1503, 1520
MvaI CCWGG 1 cut(s) 1503
MwoI GCNNNNNNNGC 4 cut(s) 206, 473, 860, 1195
NciI CCSGG 3 cut(s) 1084, 1462, 1520
NdeII GATC 4 cut(s) 553, 874, 1093, 1168
NlaIII CATG 2 cut(s) 104, 1031
NlaIV GGNNCC 2 cut(s) 1292, 1500
NmuCI GTSAC 2 cut(s) 359, 1101
NspI RCATGY 1 cut(s) 1031
OliI CACNNNNGTG 1 cut(s) 397
PceI AGGCCT 2 cut(s) 1132, 1198
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 4 cut(s) 192, 698, 827, 1390
PkrI GCNGC 1 cut(s) 648
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 2 cut(s) 535, 1358
PshBI ATTAAT 1 cut(s) 785
Psp124BI GAGCTC 1 cut(s) 1444
Psp5II RGGWCCY 2 cut(s) 535, 1358
Psp6I CCWGG 1 cut(s) 1501
PspGI CCWGG 1 cut(s) 1501
PspN4I GGNNCC 2 cut(s) 1292, 1500
PspPI GGNCC 8 cut(s) 248, 373, 535, 758, 1325, 1358, 1498, 1517
PspPPI RGGWCCY 2 cut(s) 535, 1358
PstNI CAGNNNCTG 1 cut(s) 608
RsaI GTAC 2 cut(s) 160, 431
RsaNI GTAC 2 cut(s) 159, 430
RseI CAYNNNNRTG 1 cut(s) 397
SacI GAGCTC 1 cut(s) 1444
SaqAI TTAA 5 cut(s) 56, 546, 785, 933, 1245
SatI GCNGC 1 cut(s) 647
Sau3AI GATC 4 cut(s) 553, 874, 1093, 1168
Sau96I GGNCC 8 cut(s) 248, 373, 535, 758, 1325, 1358, 1498, 1517
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 4 cut(s) 1084, 1462, 1503, 1520
SduI GDGCHC 2 cut(s) 1126, 1444
SfaNI GCATC 4 cut(s) 53, 373, 676, 982
SfcI CTRYAG 2 cut(s) 1155, 1233
SinI GGWCC 5 cut(s) 248, 373, 535, 758, 1358
SmiMI CAYNNNNRTG 1 cut(s) 397
SmlI CTYRAG 2 cut(s) 75, 650
SmoI CTYRAG 2 cut(s) 75, 650
Sse9I AATT 8 cut(s) 53, 145, 405, 504, 522, 782, 935, 1536
SseBI AGGCCT 2 cut(s) 1132, 1198
SsiI CCGC 8 cut(s) 230, 472, 713, 854, 1087, 1162, 1240, 1433
SspMI CTAG 3 cut(s) 903, 966, 1512
SstI GAGCTC 1 cut(s) 1444
StuI AGGCCT 2 cut(s) 1132, 1198
StyD4I CCNGG 4 cut(s) 1082, 1460, 1501, 1518
StyI CCWWGG 4 cut(s) 531, 902, 1127, 1193
TaaI ACNGT 3 cut(s) 311, 868, 1284
TaiI ACGT 2 cut(s) 256, 1045
TaqI TCGA 4 cut(s) 487, 508, 848, 1369
TasI AATT 8 cut(s) 53, 145, 405, 504, 522, 782, 935, 1536
TatI WGTACW 2 cut(s) 158, 429
TfiI GAWTC 4 cut(s) 192, 698, 827, 1390
Tru1I TTAA 5 cut(s) 56, 546, 785, 933, 1245
Tru9I TTAA 5 cut(s) 56, 546, 785, 933, 1245
TscAI CASTG 5 cut(s) 314, 362, 609, 916, 976
TseFI GTSAC 2 cut(s) 359, 1101
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 2 cut(s) 359, 1101
TspDTI ATGAA 1 cut(s) 803
TspRI CASTG 5 cut(s) 314, 362, 609, 916, 976
VneI GTGCAC 1 cut(s) 1122
VpaK11BI GGWCC 5 cut(s) 248, 373, 535, 758, 1358
VspI ATTAAT 1 cut(s) 785
XapI RAATTY 4 cut(s) 145, 504, 935, 1536
XceI RCATGY 1 cut(s) 1031
XmaJI CCTAGG 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 3 cut(s) 903, 966, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.