Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000531.1

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Reverse (-)

51558 .. 57818

Gene Structure 6261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000531.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atggcattttggtgcagcagactcaggcaattagcccatcactctaagaccattccttatgcttcttctctgcttaaccccactgcttccaagccatgcgtttcagacaacccattgatctctcaccctgattttatttttgccagtaaagttaggttctttgctgccccagttcaggcaaatgcaaatgcaaggaagacagagcaggccacgagtggtccgcggttgaatgagcatatcagagccaatgttgttaggcttgttatgggcgaagaacattttatcatctcaaagagtgaagctctggaacgtgccaggaatcttgagcttgatttagtcgaggttcagggcacagctaatcctcctgtttgtaaaatcatggattaccataaagagaagtataaaaaagaaacaagggagaaagagcagattaaaatcaagtctaaggaagttaagactttgcgtgcagatactaaggaagtcaagttttctccaaagactgaggcaaaggatctcaagatgaaagcagacatggtgaagagatttatggacaagggttaccgggtgaagtgtactgcctcggattctgagggtcgggacttgggagcagttttctctcgtctcattgcgctgatagaagacacagcgtatatcgaatgtgaacctatggtaggaagaggaaaagagtcattcataatggtcaggcatgtgaagtttggcccaccaaagagtggtgggaaaaaaacaaaggctgaaaacaaaaaaagccctgagaagggtagtggtgatggtattggggttactaccagagcagacacagttccacttcctccacaagaatcttctggtgtggctgaaaataggtacagaaatactgaggtttcaccaacaagagaaatggatagtaagagagaaactcccaataacagagaaatcccaatttcacatttctcaccatcaatgagagagcagcatattccatatcaaagaagagaagcacctacaaacgtgcacttctcatcgccaacaagagaaaccaacagagctgctccatcagcatttagaaactctgctcagcttcctaacagtattcccaagcaagaaccatctaatcctaatcctcaccgttctgcaggactcaagcaagaaccatctagtcctaatcctcctcgttctcgtcctccaggacttggttatgggatatttagcaccccaactggtaatggttccgcaaaacaaggtgtgtcggaaaggtttccggcaaatccaaactcaccaagttcaagaccttatagtagccaaagaccaggagcaggcattggtaaggatggacgggggatgggtaatctttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

451

Amino Acids

50.01

Weight (kDa)

9.85

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	731, 1190
AccII	CGCG	1 cut(s)	223
AciI	CCGC	3 cut(s)	221, 223, 1230
AclWI	GGATC	1 cut(s)	519
AfaI	GTAC	2 cut(s)	574, 866
AfiI	CCNNNNNNNGG	7 cut(s)	175, 671, 731, 775, 776, 1190, 1313
AgsI	TTSAA	2 cut(s)	229, 1284
AjnI	CCWGG	3 cut(s)	314, 1183, 1306
AluBI	AGCT	5 cut(s)	302, 328, 356, 1046, 1078
AluI	AGCT	5 cut(s)	302, 328, 356, 1046, 1078
Alw21I	GWGCWC	1 cut(s)	1014
Alw26I	GTCTC	1 cut(s)	626
Alw44I	GTGCAC	1 cut(s)	1010
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	2 cut(s)	207, 718
ApaLI	GTGCAC	1 cut(s)	1010
ApeKI	GCWGC	4 cut(s)	15, 164, 970, 1046
Asp700I	GAANNNNTTC	1 cut(s)	1254
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	2 cut(s)	218, 719
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	8 cut(s)	116, 547, 577, 797, 876, 945, 1115, 1266
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	2 cut(s)	353, 1014
BauI	CACGAG	1 cut(s)	211
BbsI	GAAGAC	2 cut(s)	203, 645
Bbv12I	GWGCWC	1 cut(s)	1014
BbvI	GCAGC	4 cut(s)	27, 151, 982, 1033
BccI	CCATC	8 cut(s)	45, 782, 964, 1060, 1114, 1159, 1322, 1333
BciT130I	CCWGG	3 cut(s)	316, 1185, 1308
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	1155
BfmI	CTRYAG	1 cut(s)	1131
BisI	GCNGC	4 cut(s)	16, 165, 971, 1047
BlpI	GCTNAGC	1 cut(s)	1074
BlsI	GCNGC	4 cut(s)	17, 166, 972, 1048
Bme1390I	CCNGG	4 cut(s)	316, 563, 1185, 1308
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	218, 719
BmiI	GGNNCC	1 cut(s)	1228
BmrFI	CCNGG	4 cut(s)	316, 563, 1185, 1308
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	203, 645
BplI	GAGNNNNNCTC	4 cut(s)	286, 318, 901, 933
BpmI	CTGGAG	1 cut(s)	1167
Bpu1102I	GCTNAGC	1 cut(s)	1074
BpuEI	CTTGAG	3 cut(s)	344, 500, 1124
BpuMI	CCSGG	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	221, 579
Bsc4I	CCNNNNNNNGG	7 cut(s)	175, 671, 731, 775, 776, 1190, 1313
Bse1I	ACTGG	3 cut(s)	144, 170, 1222
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	434
BseBI	CCWGG	3 cut(s)	316, 1185, 1308
BseDI	CCNNGG	2 cut(s)	221, 579
BseGI	GGATG	2 cut(s)	1333, 1344
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	7 cut(s)	175, 671, 731, 775, 776, 1190, 1313
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	6 cut(s)	37, 492, 579, 762, 867, 1088
BseNI	ACTGG	3 cut(s)	144, 170, 1222
BseRI	GAGGAG	1 cut(s)	1158
BseSI	GKGCMC	2 cut(s)	353, 1014
BseXI	GCAGC	4 cut(s)	27, 151, 982, 1033
BsgI	GTGCAG	2 cut(s)	34, 486
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	209, 720
BsiHKAI	GWGCWC	1 cut(s)	1014
BsiSI	CCGG	2 cut(s)	562, 1259
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	7 cut(s)	175, 671, 731, 775, 776, 1190, 1313
BsmAI	GTCTC	1 cut(s)	626
BsmBI	CGTCTC	1 cut(s)	626
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	2 cut(s)	209, 720
Bsp1286I	GDGCHC	2 cut(s)	353, 1014
Bsp143I	GATC	2 cut(s)	117, 511
Bsp1720I	GCTNAGC	1 cut(s)	1074
BspACI	CCGC	3 cut(s)	221, 223, 1230
BspANI	GGCC	2 cut(s)	209, 720
BspCNI	CTCAG	6 cut(s)	36, 493, 580, 763, 868, 1087
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	1228
BspMAI	CTGCAG	1 cut(s)	1135
BspPI	GGATC	1 cut(s)	519
BsrDI	GCAATG	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	144, 170, 1222
BssECI	CCNNGG	2 cut(s)	221, 579
BssMI	GATC	2 cut(s)	117, 511
BssSI	CACGAG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	211
Bst2UI	CCWGG	3 cut(s)	316, 1185, 1308
Bst4CI	ACNGT	3 cut(s)	820, 1088, 1127
Bst6I	CTCTTC	3 cut(s)	533, 670, 985
BstC8I	GCNNGC	3 cut(s)	207, 465, 1315
BstDEI	CTNAG	9 cut(s)	23, 45, 444, 474, 501, 588, 771, 876, 1074
BstDSI	CCRYGG	1 cut(s)	221
BstEII	GGTNACC	1 cut(s)	557
BstENI	CCTNNNNNAGG	1 cut(s)	669
BstF5I	GGATG	2 cut(s)	1333, 1344
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	2 cut(s)	120, 514
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	2 cut(s)	117, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	1055
BstNI	CCWGG	3 cut(s)	316, 1185, 1308
BstNSI	RCATGY	1 cut(s)	710
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	4 cut(s)	314, 561, 1183, 1306
BstSFI	CTRYAG	1 cut(s)	1131
BstSLI	GKGCMC	2 cut(s)	353, 1014
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	4 cut(s)	27, 151, 982, 1033
BstV2I	GAAGAC	2 cut(s)	203, 645
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	209, 720
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	1005
BtsCI	GGATG	2 cut(s)	1333, 1344
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	207, 465, 1315
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	2 cut(s)	218, 719
Cfr42I	CCGCGG	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	573, 865
CviAII	CATG	4 cut(s)	96, 379, 532, 707
CviQI	GTAC	2 cut(s)	573, 865
DdeI	CTNAG	9 cut(s)	23, 45, 444, 474, 501, 588, 771, 876, 1074
DpnI	GATC	2 cut(s)	119, 513
DpnII	GATC	2 cut(s)	117, 511
Eam1104I	CTCTTC	3 cut(s)	533, 670, 985
EarI	CTCTTC	3 cut(s)	533, 670, 985
Eco47I	GGWCC	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	669
EcoO65I	GGTNACC	1 cut(s)	557
EcoRII	CCWGG	3 cut(s)	314, 1183, 1306
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	4 cut(s)	99, 382, 535, 710
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	4 cut(s)	95, 378, 531, 706
Fnu4HI	GCNGC	4 cut(s)	16, 165, 971, 1047
FokI	GGATG	2 cut(s)	1340, 1351
Fsp4HI	GCNGC	4 cut(s)	16, 165, 971, 1047
FspBI	CTAG	1 cut(s)	1155
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	4 cut(s)	16, 165, 971, 1047
GsuI	CTGGAG	1 cut(s)	1167
HaeIII	GGCC	2 cut(s)	209, 720
HapII	CCGG	2 cut(s)	562, 1259
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	4 cut(s)	99, 382, 535, 710
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	6 cut(s)	21, 319, 584, 686, 839, 1137
HpaII	CCGG	2 cut(s)	562, 1259
HphI	GGTGA	8 cut(s)	116, 547, 577, 797, 876, 945, 1115, 1266
Hpy166II	GTNNAC	3 cut(s)	573, 662, 1012
Hpy188I	TCNGA	5 cut(s)	106, 242, 583, 589, 1249
Hpy188III	TCNNGA	5 cut(s)	305, 323, 517, 596, 1284
Hpy8I	GTNNAC	3 cut(s)	573, 662, 1012
HpyAV	CCTTC	1 cut(s)	769
HpyCH4III	ACNGT	3 cut(s)	820, 1088, 1127
HpyCH4IV	ACGT	2 cut(s)	310, 1008
HpyCH4V	TGCA	6 cut(s)	15, 185, 191, 467, 1012, 1133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1055
HpyF3I	CTNAG	9 cut(s)	23, 45, 444, 474, 501, 588, 771, 876, 1074
HpySE526I	ACGT	2 cut(s)	310, 1008
Hsp92II	CATG	4 cut(s)	99, 382, 535, 710
HspAI	GCGC	1 cut(s)	629
KspI	CCGCGG	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	117, 511
LmnI	GCTCC	3 cut(s)	605, 1054, 1310
Lsp1109I	GCAGC	4 cut(s)	27, 151, 982, 1033
MaeI	CTAG	1 cut(s)	1155
MaeII	ACGT	2 cut(s)	310, 1008
MaeIII	GTNAC	2 cut(s)	557, 799
MalI	GATC	2 cut(s)	119, 513
MboI	GATC	2 cut(s)	117, 511
MboII	GAAGA	8 cut(s)	57, 208, 284, 550, 650, 687, 834, 1002
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	353, 1014
MluCI	AATT	2 cut(s)	29, 939
MlyI	GAGTC	3 cut(s)	15, 695, 1131
MmeI	TCCRAC	1 cut(s)	1227
MroXI	GAANNNNTTC	1 cut(s)	1254
MseI	TTAA	3 cut(s)	75, 432, 453
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	2 cut(s)	562, 1259
MspR9I	CCNGG	4 cut(s)	316, 563, 1185, 1308
MvaI	CCWGG	3 cut(s)	316, 1185, 1308
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	1055
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	2 cut(s)	117, 511
NlaIII	CATG	4 cut(s)	99, 382, 535, 710
NlaIV	GGNNCC	1 cut(s)	1228
NspI	RCATGY	1 cut(s)	710
PdmI	GAANNNNTTC	1 cut(s)	1254
PfeI	GAWTC	3 cut(s)	319, 584, 839
PflMI	CCANNNNNTGG	2 cut(s)	731, 1190
PfoI	TCCNGGA	1 cut(s)	1183
PkrI	GCNGC	4 cut(s)	17, 166, 972, 1048
PleI	GAGTC	3 cut(s)	15, 694, 1131
PpsI	GAGTC	3 cut(s)	15, 694, 1131
Psp6I	CCWGG	3 cut(s)	314, 1183, 1306
PspEI	GGTNACC	1 cut(s)	557
PspGI	CCWGG	3 cut(s)	314, 1183, 1306
PspN4I	GGNNCC	1 cut(s)	1228
PspPI	GGNCC	2 cut(s)	218, 719
PstI	CTGCAG	1 cut(s)	1135
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	2 cut(s)	574, 866
RsaNI	GTAC	2 cut(s)	573, 865
RseI	CAYNNNNRTG	1 cut(s)	10
SacII	CCGCGG	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	75, 432, 453
SatI	GCNGC	4 cut(s)	16, 165, 971, 1047
Sau3AI	GATC	2 cut(s)	117, 511
Sau96I	GGNCC	2 cut(s)	218, 719
SchI	GAGTC	3 cut(s)	15, 695, 1131
ScrFI	CCNGG	4 cut(s)	316, 563, 1185, 1308
SduI	GDGCHC	2 cut(s)	353, 1014
SfcI	CTRYAG	1 cut(s)	1131
Sfr303I	CCGCGG	1 cut(s)	224
SgrBI	CCGCGG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	3 cut(s)	323, 515, 1139
SmoI	CTYRAG	3 cut(s)	323, 515, 1139
Sse9I	AATT	2 cut(s)	29, 939
SsiI	CCGC	3 cut(s)	221, 223, 1230
SspMI	CTAG	1 cut(s)	1155
StyD4I	CCNGG	4 cut(s)	314, 561, 1183, 1306
TaaI	ACNGT	3 cut(s)	820, 1088, 1127
TaiI	ACGT	2 cut(s)	313, 1011
TaqI	TCGA	2 cut(s)	339, 654
TasI	AATT	2 cut(s)	29, 939
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	3 cut(s)	319, 584, 839
Tru1I	TTAA	3 cut(s)	75, 432, 453
Tru9I	TTAA	3 cut(s)	75, 432, 453
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	4 cut(s)	15, 164, 970, 1046
TspDTI	ATGAA	2 cut(s)	536, 682
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	2 cut(s)	731, 1190
VneI	GTGCAC	1 cut(s)	1010
VpaK11BI	GGWCC	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	669
XceI	RCATGY	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	1254
XspI	CTAG	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.